RNA–Protein interactions for RNA: ENST00000249923.7

COPB1-201, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-201ENST00000249923 ORC4O43929 436 aa11.48□□□□□ -0.57
COPB1-201ENST00000249923 USP17L8P0C7I0 530 aa11.48□□□□□ -0.57
COPB1-201ENST00000249923 SPATA1Q5VX52 437 aa11.48□□□□□ -0.57
COPB1-201ENST00000249923 CLEC4GQ6UXB4 293 aa11.48□□□□□ -0.57
COPB1-201ENST00000249923 GPKOWQ92917 476 aaPredicted RBP eCLIP11.48□□□□□ -0.577e-7■■■□□ 17.5
COPB1-201ENST00000249923 CEP131Q9UPN4 1083 aa11.48□□□□□ -0.57
COPB1-201ENST00000249923 DDAH1O94760 285 aa11.48□□□□□ -0.57
COPB1-201ENST00000249923 IBSPP21815 317 aaPredicted RBP11.48□□□□□ -0.57
COPB1-201ENST00000249923 NAALADL2Q58DX5 795 aa11.48□□□□□ -0.57
COPB1-201ENST00000249923 TMCO3Q6UWJ1 677 aa11.48□□□□□ -0.57
COPB1-201ENST00000249923 TULP1O00294 542 aaPredicted RBP11.48□□□□□ -0.57
COPB1-201ENST00000249923 PNMA6AP0CW24 399 aaPredicted RBP11.48□□□□□ -0.57
COPB1-201ENST00000249923 GNG11P61952 73 aa11.48□□□□□ -0.57
COPB1-201ENST00000249923 PPARDQ03181 441 aa11.48□□□□□ -0.57
COPB1-201ENST00000249923 PPP2R5BQ15173 497 aa11.48□□□□□ -0.57
COPB1-201ENST00000249923 TERF2Q15554 542 aa11.48□□□□□ -0.57
COPB1-201ENST00000249923 RSRC2Q7L4I2 434 aaKnown RBP11.48□□□□□ -0.57
COPB1-201ENST00000249923 CTNND2Q9UQB3 1225 aa11.48□□□□□ -0.57
COPB1-201ENST00000249923 PP2D1A8MPX8 630 aa11.47□□□□□ -0.57
COPB1-201ENST00000249923 ANKRD65E5RJM6 399 aa11.47□□□□□ -0.57
COPB1-201ENST00000249923 CYTH3O43739 400 aa11.47□□□□□ -0.57
COPB1-201ENST00000249923 CASP14P31944 242 aa11.47□□□□□ -0.57
COPB1-201ENST00000249923 MCM7P33993 719 aa11.47□□□□□ -0.57
COPB1-201ENST00000249923 LMAN1P49257 510 aa11.47□□□□□ -0.57
COPB1-201ENST00000249923 PFKFB3Q16875 520 aaPredicted RBP11.47□□□□□ -0.57
COPB1-201ENST00000249923 IRF2BP1Q8IU81 584 aa11.47□□□□□ -0.57
COPB1-201ENST00000249923 DYNLL2Q96FJ2 89 aa11.47□□□□□ -0.57
COPB1-201ENST00000249923 HOOK1Q9UJC3 728 aaKnown RBP11.47□□□□□ -0.57
COPB1-201ENST00000249923 ADGRG1Q9Y653 693 aa11.47□□□□□ -0.57
COPB1-201ENST00000249923 NKRFO15226 690 aaKnown RBP eCLIP11.47□□□□□ -0.57
COPB1-201ENST00000249923 SCG2P13521 617 aa11.47□□□□□ -0.57
COPB1-201ENST00000249923 PMS1P54277 932 aaKnown RBP11.47□□□□□ -0.57
COPB1-201ENST00000249923 ERVK-24P63145 666 aa11.47□□□□□ -0.57
COPB1-201ENST00000249923 MCM6Q14566 821 aa11.47□□□□□ -0.57
COPB1-201ENST00000249923 CAVIN4Q5BKX8 364 aa11.47□□□□□ -0.57
COPB1-201ENST00000249923 SLC10A5Q5PT55 438 aa11.47□□□□□ -0.57
COPB1-201ENST00000249923 KANK3Q6NY19 840 aa11.47□□□□□ -0.57
COPB1-201ENST00000249923 IQCA1Q86XH1 822 aa11.47□□□□□ -0.57
COPB1-201ENST00000249923 IGSF22Q8N9C0 903 aa11.47□□□□□ -0.57
COPB1-201ENST00000249923 FERMT2Q96AC1 680 aa11.47□□□□□ -0.57
COPB1-201ENST00000249923 GSDMAQ96QA5 445 aa11.47□□□□□ -0.57
COPB1-201ENST00000249923 RBM28Q9NW13 759 aaKnown RBP11.47□□□□□ -0.57
COPB1-201ENST00000249923 ARGLU1Q9NWB6 273 aaPredicted RBP11.47□□□□□ -0.57
COPB1-201ENST00000249923 THRAP3Q9Y2W1 955 aaKnown RBP11.47□□□□□ -0.57
COPB1-201ENST00000249923 MFAP3LO75121 409 aa11.47□□□□□ -0.57
COPB1-201ENST00000249923 CCT6AP40227 531 aaKnown RBP11.47□□□□□ -0.57
COPB1-201ENST00000249923 DHX8Q14562 1220 aaKnown RBP11.47□□□□□ -0.57
COPB1-201ENST00000249923 GDAQ9Y2T3 454 aa11.47□□□□□ -0.57
COPB1-201ENST00000249923 FECHP22830 423 aa11.46□□□□□ -0.57
COPB1-201ENST00000249923 KRT31Q15323 416 aa11.46□□□□□ -0.57
COPB1-201ENST00000249923 PANX2Q96RD6 677 aa11.46□□□□□ -0.57
COPB1-201ENST00000249923 TMEM60Q9H2L4 133 aa11.46□□□□□ -0.57
COPB1-201ENST00000249923 LZTFL1Q9NQ48 299 aa11.46□□□□□ -0.57
COPB1-201ENST00000249923 MAPK8IP1Q9UQF2 711 aa11.46□□□□□ -0.57
COPB1-201ENST00000249923 DDX60LQ5H9U9 1706 aaKnown RBP11.46□□□□□ -0.57
COPB1-201ENST00000249923 AKR1B15C9JRZ8 316 aaPredicted RBP11.46□□□□□ -0.58
COPB1-201ENST00000249923 ZSCAN12O43309 604 aa11.46□□□□□ -0.58
COPB1-201ENST00000249923 TUBB4AP04350 444 aa11.46□□□□□ -0.58
COPB1-201ENST00000249923 AKAP17AQ02040 695 aaKnown RBP11.46□□□□□ -0.58
COPB1-201ENST00000249923 SLC44A5Q8NCS7 719 aa11.46□□□□□ -0.58
COPB1-201ENST00000249923 RABEP2Q9H5N1 569 aa11.46□□□□□ -0.58
COPB1-201ENST00000249923 GNL3LQ9NVN8 582 aaKnown RBP11.46□□□□□ -0.58
COPB1-201ENST00000249923 MYH1P12882 1939 aa11.46□□□□□ -0.58
COPB1-201ENST00000249923 TRIM49BA6NDI0 452 aa11.45□□□□□ -0.58
COPB1-201ENST00000249923 EFCAB8A8MWE9 144 aa11.45□□□□□ -0.58
COPB1-201ENST00000249923 TBC1D8O95759 1140 aa11.45□□□□□ -0.58
COPB1-201ENST00000249923 ACRBPQ8NEB7 543 aa11.45□□□□□ -0.58
COPB1-201ENST00000249923 CDCA7Q9BWT1 371 aaPredicted RBP11.45□□□□□ -0.58
COPB1-201ENST00000249923 UBXN6Q9BZV1 441 aa11.45□□□□□ -0.58
COPB1-201ENST00000249923 DACH1Q9UI36 760 aa11.45□□□□□ -0.58
COPB1-201ENST00000249923 MAD2L2Q9UI95 211 aa11.45□□□□□ -0.58
COPB1-201ENST00000249923 USP17L3A6NCW0 530 aa11.45□□□□□ -0.58
COPB1-201ENST00000249923 USP17L4A6NCW7 530 aa11.45□□□□□ -0.58
COPB1-201ENST00000249923 RPS8P62241 208 aaKnown RBP11.45□□□□□ -0.58
COPB1-201ENST00000249923 GABPB1Q06547 395 aaPredicted RBP11.45□□□□□ -0.58
COPB1-201ENST00000249923 USP17L1Q7RTZ2 530 aa11.45□□□□□ -0.58
COPB1-201ENST00000249923 GPR101Q96P66 508 aaPredicted RBP11.45□□□□□ -0.58
COPB1-201ENST00000249923 CPVLQ9H3G5 476 aa11.45□□□□□ -0.58
COPB1-201ENST00000249923 ZNF652Q9Y2D9 606 aa11.45□□□□□ -0.58
COPB1-201ENST00000249923 LRRC10BA6NIK2 292 aa11.45□□□□□ -0.58
COPB1-201ENST00000249923 CCP110O43303 1012 aa11.45□□□□□ -0.58
COPB1-201ENST00000249923 HINFPQ9BQA5 517 aa11.45□□□□□ -0.58
COPB1-201ENST00000249923 NAV1Q8NEY1 1877 aa11.44□□□□□ -0.58
COPB1-201ENST00000249923 FAM193AP78312 1265 aa11.44□□□□□ -0.58
COPB1-201ENST00000249923 DIXDC1Q155Q3 683 aa11.44□□□□□ -0.58
COPB1-201ENST00000249923 SBK1Q52WX2 424 aa11.44□□□□□ -0.58
COPB1-201ENST00000249923 PDS5AQ29RF7 1337 aaKnown RBP11.44□□□□□ -0.58
COPB1-201ENST00000249923 BTAF1O14981 1849 aa11.44□□□□□ -0.58
COPB1-201ENST00000249923 CALM1P0DP23 149 aa11.44□□□□□ -0.58
COPB1-201ENST00000249923 CALM2P0DP24 149 aa11.44□□□□□ -0.58
COPB1-201ENST00000249923 CALM3P0DP25 149 aa11.44□□□□□ -0.58
COPB1-201ENST00000249923 PCP11498 1178 aaKnown RBP11.44□□□□□ -0.58
COPB1-201ENST00000249923 XBP1P17861 261 aa11.44□□□□□ -0.58
COPB1-201ENST00000249923 HIBADHP31937 336 aaKnown RBP11.44□□□□□ -0.58
COPB1-201ENST00000249923 ARHGAP25P42331 645 aa11.44□□□□□ -0.58
COPB1-201ENST00000249923 PRCPP42785 496 aa11.44□□□□□ -0.58
COPB1-201ENST00000249923 PPP2R3AQ06190 1150 aa11.44□□□□□ -0.58
COPB1-201ENST00000249923 BARGINQ6ZT62 677 aa11.44□□□□□ -0.58
COPB1-201ENST00000249923 SH3RF3Q8TEJ3 882 aaPredicted RBP11.44□□□□□ -0.58
COPB1-201ENST00000249923 SRRTQ9BXP5 876 aaKnown RBP11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms