RNA–Protein interactions for RNA: ENST00000236192.11

VAMP4-201, Transcript of vesicle associated membrane protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VAMP4, Length 5,159 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-201ENST00000236192 ZBTB43O43298 467 aa14.19□□□□□ -0.14
VAMP4-201ENST00000236192 NDUFA10O95299 355 aa14.19□□□□□ -0.14
VAMP4-201ENST00000236192 HDLBPQ00341 1268 aaKnown RBP14.19□□□□□ -0.14
VAMP4-201ENST00000236192 DEUP1Q05D60 604 aa14.19□□□□□ -0.14
VAMP4-201ENST00000236192 RILPL1Q5EBL4 403 aa14.19□□□□□ -0.14
VAMP4-201ENST00000236192 YTHDF3Q7Z739 585 aaKnown RBP14.19□□□□□ -0.14
VAMP4-201ENST00000236192 FAM53CQ9NYF3 392 aa14.19□□□□□ -0.14
VAMP4-201ENST00000236192 BIN2Q9UBW5 565 aaPredicted RBP14.19□□□□□ -0.14
VAMP4-201ENST00000236192 C15orf41Q9Y2V0 281 aa14.19□□□□□ -0.14
VAMP4-201ENST00000236192 KCNJ18B7U540 433 aa14.19□□□□□ -0.14
VAMP4-201ENST00000236192 KCNJ12Q14500 433 aa14.19□□□□□ -0.14
VAMP4-201ENST00000236192 ADCK5Q3MIX3 580 aa14.19□□□□□ -0.14
VAMP4-201ENST00000236192 FANCD2Q9BXW9 1451 aa14.19□□□□□ -0.14
VAMP4-201ENST00000236192 MBD5Q9P267 1494 aa14.19□□□□□ -0.14
VAMP4-201ENST00000236192 CLUL1Q15846 466 aa14.18□□□□□ -0.14
VAMP4-201ENST00000236192 OTUD7BQ6GQQ9 843 aa14.18□□□□□ -0.14
VAMP4-201ENST00000236192 PPP1R21Q6ZMI0 780 aa14.18□□□□□ -0.14
VAMP4-201ENST00000236192 LRRC8CQ8TDW0 803 aa14.18□□□□□ -0.14
VAMP4-201ENST00000236192 CDK19Q9BWU1 502 aa14.18□□□□□ -0.14
VAMP4-201ENST00000236192 POLR3EQ9NVU0 708 aa14.18□□□□□ -0.14
VAMP4-201ENST00000236192 CLIC4Q9Y696 253 aa14.18□□□□□ -0.14
VAMP4-201ENST00000236192 IFIT3O14879 490 aaKnown RBP14.18□□□□□ -0.14
VAMP4-201ENST00000236192 PARP1P09874 1014 aaKnown RBP14.18□□□□□ -0.14
VAMP4-201ENST00000236192 UBA7P41226 1012 aa14.18□□□□□ -0.14
VAMP4-201ENST00000236192 KDM7AQ6ZMT4 941 aa14.18□□□□□ -0.14
VAMP4-201ENST00000236192 CCDC80Q76M96 950 aa14.18□□□□□ -0.14
VAMP4-201ENST00000236192 SPATA21Q7Z572 469 aa14.18□□□□□ -0.14
VAMP4-201ENST00000236192 MPHOSPH6Q99547 160 aaKnown RBP14.18□□□□□ -0.14
VAMP4-201ENST00000236192 KRT23Q9C075 422 aa14.18□□□□□ -0.14
VAMP4-201ENST00000236192 SERTAD1Q9UHV2 236 aa14.18□□□□□ -0.14
VAMP4-201ENST00000236192 MMEP08473 750 aa14.18□□□□□ -0.14
VAMP4-201ENST00000236192 GSTA2P09210 222 aa14.18□□□□□ -0.14
VAMP4-201ENST00000236192 SCTRP47872 440 aa14.18□□□□□ -0.14
VAMP4-201ENST00000236192 BICD1Q96G01 975 aa14.18□□□□□ -0.14
VAMP4-201ENST00000236192 GOLPH3LQ9H4A5 285 aa14.18□□□□□ -0.14
VAMP4-201ENST00000236192 SAMD9Q5K651 1589 aa14.18□□□□□ -0.14
VAMP4-201ENST00000236192 ARHGAP31Q2M1Z3 1444 aa14.18□□□□□ -0.14
VAMP4-201ENST00000236192 IFIT1P09914 478 aaKnown RBP14.18□□□□□ -0.14
VAMP4-201ENST00000236192 TMEM67Q5HYA8 995 aa14.18□□□□□ -0.14
VAMP4-201ENST00000236192 MAIP1Q8WWC4 291 aa14.18□□□□□ -0.14
VAMP4-201ENST00000236192 ZHX3Q9H4I2 956 aa14.18□□□□□ -0.14
VAMP4-201ENST00000236192 ANKZF1Q9H8Y5 726 aa14.18□□□□□ -0.14
VAMP4-201ENST00000236192 PCDHA5Q9Y5H7 936 aa14.18□□□□□ -0.14
VAMP4-201ENST00000236192 HAND2P61296 217 aa14.17□□□□□ -0.14
VAMP4-201ENST00000236192 RNASELQ05823 741 aaKnown RBP14.17□□□□□ -0.14
VAMP4-201ENST00000236192 RRS1Q15050 365 aaKnown RBP14.17□□□□□ -0.14
VAMP4-201ENST00000236192 LMOD2Q6P5Q4 547 aa14.17□□□□□ -0.14
VAMP4-201ENST00000236192 CCDC82Q8N4S0 544 aa14.17□□□□□ -0.14
VAMP4-201ENST00000236192 OPTNQ96CV9 577 aa14.17□□□□□ -0.14
VAMP4-201ENST00000236192 CA8P35219 290 aa14.17□□□□□ -0.14
VAMP4-201ENST00000236192 PDE6CP51160 858 aa14.17□□□□□ -0.14
VAMP4-201ENST00000236192 ANKRD20A3Q5VUR7 823 aa14.17□□□□□ -0.14
VAMP4-201ENST00000236192 BICDL1Q6ZP65 573 aa14.17□□□□□ -0.14
VAMP4-201ENST00000236192 NELFBQ8WX92 580 aa14.17□□□□□ -0.14
VAMP4-201ENST00000236192 DYDC2Q96IM9 177 aa14.17□□□□□ -0.14
VAMP4-201ENST00000236192 DLGAP2Q9P1A6 1054 aa14.17□□□□□ -0.14
VAMP4-201ENST00000236192 SRGAP2O75044 1071 aa14.17□□□□□ -0.14
VAMP4-201ENST00000236192 TYW1BQ6NUM6 668 aa14.17□□□□□ -0.14
VAMP4-201ENST00000236192 FAM227BQ96M60 508 aa14.17□□□□□ -0.14
VAMP4-201ENST00000236192 GRIN2AQ12879 1464 aa14.17□□□□□ -0.14
VAMP4-201ENST00000236192 ATXN2Q99700 1313 aaKnown RBP14.17□□□□□ -0.14
VAMP4-201ENST00000236192 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.17□□□□□ -0.14
VAMP4-201ENST00000236192 SPECC1L-ADORA2AF8WAN1 911 aa14.17□□□□□ -0.14
VAMP4-201ENST00000236192 CUL1Q13616 776 aa14.17□□□□□ -0.14
VAMP4-201ENST00000236192 ITGB1BP2Q9UKP3 347 aa14.17□□□□□ -0.14
VAMP4-201ENST00000236192 CORO1CQ9ULV4 474 aaPredicted RBP14.17□□□□□ -0.14
VAMP4-201ENST00000236192 PPP1R2P41236 205 aa14.16□□□□□ -0.14
VAMP4-201ENST00000236192 AARSP49588 968 aaKnown RBP eCLIP14.16□□□□□ -0.14
VAMP4-201ENST00000236192 TTC5Q8N0Z6 440 aa14.16□□□□□ -0.14
VAMP4-201ENST00000236192 ZNF483Q8TF39 744 aaPredicted RBP14.16□□□□□ -0.14
VAMP4-201ENST00000236192 TUBB6Q9BUF5 446 aa14.16□□□□□ -0.14
VAMP4-201ENST00000236192 DDX23Q9BUQ8 820 aaKnown RBP14.16□□□□□ -0.14
VAMP4-201ENST00000236192 IKBKGQ9Y6K9 419 aa14.16□□□□□ -0.14
VAMP4-201ENST00000236192 SH2D3CQ8N5H7 860 aa14.16□□□□□ -0.14
VAMP4-201ENST00000236192 LINC00301Q8NCQ3 95 aa14.16□□□□□ -0.14
VAMP4-201ENST00000236192 MYCBPAPQ8TBZ2 947 aa14.16□□□□□ -0.14
VAMP4-201ENST00000236192 MTUS1Q9ULD2 1270 aa14.16□□□□□ -0.14
VAMP4-201ENST00000236192 SYNMO15061 1565 aa14.16□□□□□ -0.14
VAMP4-201ENST00000236192 CCT8L1PA6NM43 557 aa14.16□□□□□ -0.14
VAMP4-201ENST00000236192 H0Y3Z8 333 aa14.16□□□□□ -0.14
VAMP4-201ENST00000236192 MSH2P43246 934 aa14.16□□□□□ -0.14
VAMP4-201ENST00000236192 RBM5P52756 815 aaKnown RBP eCLIP14.16□□□□□ -0.14
VAMP4-201ENST00000236192 PPP2R5EQ16537 467 aa14.16□□□□□ -0.14
VAMP4-201ENST00000236192 SLC9C1Q4G0N8 1177 aa14.16□□□□□ -0.14
VAMP4-201ENST00000236192 THEMIS2Q5TEJ8 643 aa14.16□□□□□ -0.14
VAMP4-201ENST00000236192 CHST3Q7LGC8 479 aa14.16□□□□□ -0.14
VAMP4-201ENST00000236192 TSC22D4Q9Y3Q8 395 aa14.16□□□□□ -0.14
VAMP4-201ENST00000236192 COPB1P53618 953 aaKnown RBP14.16□□□□□ -0.14
VAMP4-201ENST00000236192 MORC3Q14149 939 aa14.16□□□□□ -0.14
VAMP4-201ENST00000236192 Q4G0T1 1027 aa14.16□□□□□ -0.14
VAMP4-201ENST00000236192 CFAP61Q8NHU2 1237 aa14.16□□□□□ -0.14
VAMP4-201ENST00000236192 RNPC3Q96LT9 517 aaKnown RBP14.16□□□□□ -0.14
VAMP4-201ENST00000236192 PRAM1Q96QH2 718 aa14.16□□□□□ -0.14
VAMP4-201ENST00000236192 NUDCD1Q96RS6 583 aa14.16□□□□□ -0.14
VAMP4-201ENST00000236192 HOMER2Q9NSB8 354 aa14.16□□□□□ -0.14
VAMP4-201ENST00000236192 TCP11L1Q9NUJ3 509 aa14.16□□□□□ -0.14
VAMP4-201ENST00000236192 SEC23IPQ9Y6Y8 1000 aaKnown RBP14.16□□□□□ -0.14
VAMP4-201ENST00000236192 GNAT3A8MTJ3 354 aa14.15□□□□□ -0.14
VAMP4-201ENST00000236192 ARID5AQ03989 594 aa14.15□□□□□ -0.14
VAMP4-201ENST00000236192 HIC2Q96JB3 615 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms