RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 ZNF16P17020 682 aaPredicted RBP7.52□□□□□ -1.21
CD44-239ENST00000639002 ITGAEP38570 1179 aa7.52□□□□□ -1.21
CD44-239ENST00000639002 CWF19L2Q2TBE0 894 aaKnown RBP7.52□□□□□ -1.21
CD44-239ENST00000639002 ARSHQ5FYA8 562 aa7.52□□□□□ -1.21
CD44-239ENST00000639002 TMEM67Q5HYA8 995 aa7.52□□□□□ -1.21
CD44-239ENST00000639002 EHMT1Q9H9B1 1298 aa7.52□□□□□ -1.21
CD44-239ENST00000639002 GPATCH2Q9NW75 528 aa7.52□□□□□ -1.21
CD44-239ENST00000639002 FAM53CQ9NYF3 392 aa7.52□□□□□ -1.21
CD44-239ENST00000639002 UBP1Q9NZI7 540 aa7.52□□□□□ -1.21
CD44-239ENST00000639002 DUSP13Q9UII6 198 aa7.52□□□□□ -1.21
CD44-239ENST00000639002 HPXP02790 462 aa7.51□□□□□ -1.21
CD44-239ENST00000639002 TNNI2P48788 182 aa7.51□□□□□ -1.21
CD44-239ENST00000639002 HK2P52789 917 aa7.51□□□□□ -1.21
CD44-239ENST00000639002 CLCQ05315 142 aa7.51□□□□□ -1.21
CD44-239ENST00000639002 EGR3Q06889 387 aa7.51□□□□□ -1.21
CD44-239ENST00000639002 PHACTR4Q8IZ21 702 aa7.51□□□□□ -1.21
CD44-239ENST00000639002 ASPNQ9BXN1 380 aa7.51□□□□□ -1.21
CD44-239ENST00000639002 EBF1Q9UH73 591 aa7.51□□□□□ -1.21
CD44-239ENST00000639002 PCDHA11Q9Y5I1 949 aa7.51□□□□□ -1.21
CD44-239ENST00000639002 ZGLP1P0C6A0 271 aa7.5□□□□□ -1.21
CD44-239ENST00000639002 HS2ST1Q7LGA3 356 aa7.5□□□□□ -1.21
CD44-239ENST00000639002 CILP2Q8IUL8 1156 aa7.5□□□□□ -1.21
CD44-239ENST00000639002 CCDC120Q96HB5 630 aa7.5□□□□□ -1.21
CD44-239ENST00000639002 FAM84AQ96KN4 292 aa7.5□□□□□ -1.21
CD44-239ENST00000639002 KCNK12Q9HB15 430 aa7.5□□□□□ -1.21
CD44-239ENST00000639002 POLR2BP30876 1174 aaKnown RBP7.49□□□□□ -1.21
CD44-239ENST00000639002 GBP1P32455 592 aa7.49□□□□□ -1.21
CD44-239ENST00000639002 TRHRP34981 398 aaPredicted RBP7.49□□□□□ -1.21
CD44-239ENST00000639002 SEZ6Q53EL9 994 aa7.49□□□□□ -1.21
CD44-239ENST00000639002 CDCP2Q5VXM1 449 aa7.49□□□□□ -1.21
CD44-239ENST00000639002 ABHD4Q8TB40 342 aa7.49□□□□□ -1.21
CD44-239ENST00000639002 EAF1Q96JC9 268 aaPredicted RBP7.49□□□□□ -1.21
CD44-239ENST00000639002 ANTXR1Q9H6X2 564 aa7.49□□□□□ -1.21
CD44-239ENST00000639002 GMIPQ9P107 970 aa7.49□□□□□ -1.21
CD44-239ENST00000639002 ZNF281Q9Y2X9 895 aa7.49□□□□□ -1.21
CD44-239ENST00000639002 KRT1P04264 644 aa7.48□□□□□ -1.21
CD44-239ENST00000639002 TEKQ02763 1124 aa7.48□□□□□ -1.21
CD44-239ENST00000639002 OVOS1Q6IE37 1185 aa7.48□□□□□ -1.21
CD44-239ENST00000639002 KSR1Q8IVT5 923 aa7.48□□□□□ -1.21
CD44-239ENST00000639002 TMEM87AQ8NBN3 555 aa7.48□□□□□ -1.21
CD44-239ENST00000639002 ATG4CQ96DT6 458 aa7.48□□□□□ -1.21
CD44-239ENST00000639002 CNNM2Q9H8M5 875 aa7.48□□□□□ -1.21
CD44-239ENST00000639002 DBX1A6NMT0 343 aa7.47□□□□□ -1.21
CD44-239ENST00000639002 TIGD5Q53EQ6 642 aa7.47□□□□□ -1.21
CD44-239ENST00000639002 NBPF12Q5TAG4 269 aaPredicted RBP7.47□□□□□ -1.21
CD44-239ENST00000639002 MPZL3Q6UWV2 235 aa7.47□□□□□ -1.21
CD44-239ENST00000639002 SLITRK4Q8IW52 837 aa7.47□□□□□ -1.21
CD44-239ENST00000639002 REXO1Q8N1G1 1221 aaKnown RBP7.47□□□□□ -1.21
CD44-239ENST00000639002 MYLIPQ8WY64 445 aa7.47□□□□□ -1.21
CD44-239ENST00000639002 NT5C1AQ9BXI3 368 aa7.47□□□□□ -1.21
CD44-239ENST00000639002 BACH2Q9BYV9 841 aa7.47□□□□□ -1.21
CD44-239ENST00000639002 RAG1P15918 1043 aa7.46□□□□□ -1.22
CD44-239ENST00000639002 LTKP29376 864 aa7.46□□□□□ -1.22
CD44-239ENST00000639002 SNW1Q13573 536 aaKnown RBP7.46□□□□□ -1.22
CD44-239ENST00000639002 TMCO4Q5TGY1 634 aa7.46□□□□□ -1.22
CD44-239ENST00000639002 GK5Q6ZS86 529 aa7.46□□□□□ -1.22
CD44-239ENST00000639002 USHBP1Q8N6Y0 703 aa7.46□□□□□ -1.22
CD44-239ENST00000639002 HDAC8Q9BY41 377 aa7.46□□□□□ -1.22
CD44-239ENST00000639002 C19orf44Q9H6X5 657 aa7.46□□□□□ -1.22
CD44-239ENST00000639002 APOBRQ0VD83 1088 aa7.45□□□□□ -1.22
CD44-239ENST00000639002 MLECQ14165 292 aa7.45□□□□□ -1.22
CD44-239ENST00000639002 NBPF9Q3BBW0 867 aa7.45□□□□□ -1.22
CD44-239ENST00000639002 TMC3Q7Z5M5 1100 aa7.45□□□□□ -1.22
CD44-239ENST00000639002 PDZD8Q8NEN9 1154 aa7.45□□□□□ -1.22
CD44-239ENST00000639002 BHLHE22Q8NFJ8 381 aaPredicted RBP7.45□□□□□ -1.22
CD44-239ENST00000639002 NKD1Q969G9 470 aa7.45□□□□□ -1.22
CD44-239ENST00000639002 DIRC2Q96SL1 478 aa7.45□□□□□ -1.22
CD44-239ENST00000639002 SLC38A3Q99624 504 aa7.45□□□□□ -1.22
CD44-239ENST00000639002 G6PC3Q9BUM1 346 aa7.45□□□□□ -1.22
CD44-239ENST00000639002 RAC2P15153 192 aa7.44□□□□□ -1.22
CD44-239ENST00000639002 NMIQ13287 307 aaPredicted RBP7.44□□□□□ -1.22
CD44-239ENST00000639002 SYDE1Q6ZW31 735 aaPredicted RBP7.44□□□□□ -1.22
CD44-239ENST00000639002 NLRC3Q7RTR2 1065 aa7.44□□□□□ -1.22
CD44-239ENST00000639002 ENOX1Q8TC92 643 aaKnown RBP7.44□□□□□ -1.22
CD44-239ENST00000639002 SYTL5Q8TDW5 730 aaPredicted RBP7.44□□□□□ -1.22
CD44-239ENST00000639002 LINC01599Q8WXQ3 324 aa7.44□□□□□ -1.22
CD44-239ENST00000639002 RNF32Q9H0A6 362 aa7.44□□□□□ -1.22
CD44-239ENST00000639002 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.44□□□□□ -1.22
CD44-239ENST00000639002 NSUN3Q9H649 340 aaKnown RBP7.44□□□□□ -1.22
CD44-239ENST00000639002 NOTOA8MTQ0 251 aa7.43□□□□□ -1.22
CD44-239ENST00000639002 EFEMP2O95967 443 aa7.43□□□□□ -1.22
CD44-239ENST00000639002 NME1P15531 152 aaKnown RBP7.43□□□□□ -1.22
CD44-239ENST00000639002 FANCCQ00597 558 aa7.43□□□□□ -1.22
CD44-239ENST00000639002 NR0B2Q15466 257 aa7.43□□□□□ -1.22
CD44-239ENST00000639002 TMEM192Q8IY95 271 aa7.43□□□□□ -1.22
CD44-239ENST00000639002 ZNF512BQ96KM6 892 aaPredicted RBP7.43□□□□□ -1.22
CD44-239ENST00000639002 SPON2Q9BUD6 331 aa7.43□□□□□ -1.22
CD44-239ENST00000639002 MEIS3P2A8K0S8 358 aa7.42□□□□□ -1.22
CD44-239ENST00000639002 TNFRSF10CO14798 259 aa7.42□□□□□ -1.22
CD44-239ENST00000639002 MCM4P33991 863 aa7.42□□□□□ -1.22
CD44-239ENST00000639002 ZNF165P49910 485 aa7.42□□□□□ -1.22
CD44-239ENST00000639002 MFAP1P55081 439 aaKnown RBP7.42□□□□□ -1.22
CD44-239ENST00000639002 PKN1Q16512 942 aa7.42□□□□□ -1.22
CD44-239ENST00000639002 CLEC16AQ2KHT3 1053 aa7.42□□□□□ -1.22
CD44-239ENST00000639002 ZNF394Q53GI3 561 aa7.42□□□□□ -1.22
CD44-239ENST00000639002 KIAA0825Q8IV33 1275 aa7.42□□□□□ -1.22
CD44-239ENST00000639002 DAGLBQ8NCG7 672 aa7.42□□□□□ -1.22
CD44-239ENST00000639002 SHISA4Q96DD7 197 aa7.42□□□□□ -1.22
CD44-239ENST00000639002 TCTN2Q96GX1 697 aa7.42□□□□□ -1.22
CD44-239ENST00000639002 SLC9A7Q96T83 725 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms