RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 CYP2D7A0A087X1C5 515 aa22.85■■□□□ 1.25
CCDC28A-203ENST00000617445 SPDYE16A6NNV3 312 aaPredicted RBP22.85■■□□□ 1.25
CCDC28A-203ENST00000617445 GSG1L2A8MUP6 293 aa22.85■■□□□ 1.25
CCDC28A-203ENST00000617445 PEX10O60683 326 aa22.85■■□□□ 1.25
CCDC28A-203ENST00000617445 CNMDO75829 334 aa22.85■■□□□ 1.25
CCDC28A-203ENST00000617445 FARP2O94887 1054 aaPredicted RBP22.85■■□□□ 1.25
CCDC28A-203ENST00000617445 TSHZ3Q63HK5 1081 aa22.85■■□□□ 1.25
CCDC28A-203ENST00000617445 HDAC1Q13547 482 aaPredicted RBP22.84■■□□□ 1.25
CCDC28A-203ENST00000617445 SIAH1Q8IUQ4 282 aa22.84■■□□□ 1.25
CCDC28A-203ENST00000617445 MB21D1Q8N884 522 aa22.84■■□□□ 1.25
CCDC28A-203ENST00000617445 PI4K2BQ8TCG2 481 aa22.84■■□□□ 1.25
CCDC28A-203ENST00000617445 TRIB2Q92519 343 aa22.84■■□□□ 1.25
CCDC28A-203ENST00000617445 CRBNQ96SW2 442 aa22.84■■□□□ 1.25
CCDC28A-203ENST00000617445 TANGO6Q9C0B7 1094 aa22.84■■□□□ 1.25
CCDC28A-203ENST00000617445 VCPKMTQ9H867 229 aa22.84■■□□□ 1.25
CCDC28A-203ENST00000617445 SLC15A5A6NIM6 579 aa22.83■■□□□ 1.25
CCDC28A-203ENST00000617445 GPAA1O43292 621 aa22.83■■□□□ 1.25
CCDC28A-203ENST00000617445 MX1P20591 662 aa22.83■■□□□ 1.25
CCDC28A-203ENST00000617445 MAP2K5Q13163 448 aa22.83■■□□□ 1.25
CCDC28A-203ENST00000617445 MAP3K21Q5TCX8 1036 aa22.83■■□□□ 1.25
CCDC28A-203ENST00000617445 ANKLE1Q8NAG6 615 aa22.83■■□□□ 1.25
CCDC28A-203ENST00000617445 DPF3Q92784 378 aa22.83■■□□□ 1.25
CCDC28A-203ENST00000617445 APBA2Q99767 749 aa22.83■■□□□ 1.25
CCDC28A-203ENST00000617445 ZNF287Q9HBT7 754 aa22.83■■□□□ 1.25
CCDC28A-203ENST00000617445 IVNS1ABPQ9Y6Y0 642 aa22.83■■□□□ 1.25
CCDC28A-203ENST00000617445 ZKSCAN1P17029 563 aaPredicted RBP22.82■■□□□ 1.24
CCDC28A-203ENST00000617445 BTBD7Q9P203 1132 aa22.82■■□□□ 1.24
CCDC28A-203ENST00000617445 PATL2C9JE40 543 aaKnown RBP22.81■■□□□ 1.24
CCDC28A-203ENST00000617445 SMIM22K7EJ46 135 aa22.81■■□□□ 1.24
CCDC28A-203ENST00000617445 WDR46O15213 610 aaKnown RBP22.81■■□□□ 1.24
CCDC28A-203ENST00000617445 PTPREP23469 700 aa22.81■■□□□ 1.24
CCDC28A-203ENST00000617445 ANKRD45Q5TZF3 282 aa22.81■■□□□ 1.24
CCDC28A-203ENST00000617445 NACAP1Q9BZK3 213 aa22.81■■□□□ 1.24
CCDC28A-203ENST00000617445 MKNK2Q9HBH9 465 aa22.81■■□□□ 1.24
CCDC28A-203ENST00000617445 ROBO3Q96MS0 1386 aa22.8■■□□□ 1.24
CCDC28A-203ENST00000617445 STRNO43815 780 aa22.8■■□□□ 1.24
CCDC28A-203ENST00000617445 EEF2P13639 858 aaKnown RBP22.8■■□□□ 1.24
CCDC28A-203ENST00000617445 DSG3P32926 999 aa22.8■■□□□ 1.24
CCDC28A-203ENST00000617445 WDR78Q5VTH9 848 aa22.8■■□□□ 1.24
CCDC28A-203ENST00000617445 SHCBP1Q8NEM2 672 aa22.8■■□□□ 1.24
CCDC28A-203ENST00000617445 FSD1Q9BTV5 496 aa22.8■■□□□ 1.24
CCDC28A-203ENST00000617445 GOPCQ9HD26 462 aa22.8■■□□□ 1.24
CCDC28A-203ENST00000617445 RLFQ13129 1914 aa22.8■■□□□ 1.24
CCDC28A-203ENST00000617445 MINDY4BA8MYZ0 360 aa22.79■■□□□ 1.24
CCDC28A-203ENST00000617445 FLOT1O75955 427 aa22.79■■□□□ 1.24
CCDC28A-203ENST00000617445 APPP05067 770 aa22.79■■□□□ 1.24
CCDC28A-203ENST00000617445 HOXC6P09630 235 aa22.79■■□□□ 1.24
CCDC28A-203ENST00000617445 PRKAR2AP13861 404 aaKnown RBP22.79■■□□□ 1.24
CCDC28A-203ENST00000617445 TDO2P48775 406 aa22.79■■□□□ 1.24
CCDC28A-203ENST00000617445 TRIM32Q13049 653 aa22.79■■□□□ 1.24
CCDC28A-203ENST00000617445 KIAA1755Q5JYT7 1200 aa22.79■■□□□ 1.24
CCDC28A-203ENST00000617445 TICAM2Q86XR7 235 aa22.79■■□□□ 1.24
CCDC28A-203ENST00000617445 OTUD7AQ8TE49 926 aaPredicted RBP22.79■■□□□ 1.24
CCDC28A-203ENST00000617445 SPATC1LQ9H0A9 340 aa22.79■■□□□ 1.24
CCDC28A-203ENST00000617445 NR2E3Q9Y5X4 410 aa22.79■■□□□ 1.24
CCDC28A-203ENST00000617445 M0R2C6 588 aa22.78■■□□□ 1.24
CCDC28A-203ENST00000617445 ATP2B2Q01814 1243 aa22.78■■□□□ 1.24
CCDC28A-203ENST00000617445 GRB14Q14449 540 aa22.78■■□□□ 1.24
CCDC28A-203ENST00000617445 NECAB2Q7Z6G3 386 aa22.78■■□□□ 1.24
CCDC28A-203ENST00000617445 CLEC10AQ8IUN9 316 aa22.78■■□□□ 1.24
CCDC28A-203ENST00000617445 SPICE1Q8N0Z3 855 aa22.78■■□□□ 1.24
CCDC28A-203ENST00000617445 YTHDC1Q96MU7 727 aaKnown RBP22.78■■□□□ 1.24
CCDC28A-203ENST00000617445 STAP2Q9UGK3 403 aa22.78■■□□□ 1.24
CCDC28A-203ENST00000617445 SALL3Q9BXA9 1300 aa22.78■■□□□ 1.24
CCDC28A-203ENST00000617445 H0YGN5 161 aa22.77■■□□□ 1.24
CCDC28A-203ENST00000617445 RASA1P20936 1047 aa22.77■■□□□ 1.24
CCDC28A-203ENST00000617445 CACNB2Q08289 660 aaPredicted RBP22.77■■□□□ 1.24
CCDC28A-203ENST00000617445 HABP4Q5JVS0 413 aaKnown RBP22.77■■□□□ 1.24
CCDC28A-203ENST00000617445 ZMYM1Q5SVZ6 1142 aa22.77■■□□□ 1.24
CCDC28A-203ENST00000617445 MFSD14CQ5VZR4 134 aa22.77■■□□□ 1.24
CCDC28A-203ENST00000617445 IFNL3Q8IZI9 196 aa22.77■■□□□ 1.24
CCDC28A-203ENST00000617445 MOV10L1Q9BXT6 1211 aaKnown RBP22.77■■□□□ 1.24
CCDC28A-203ENST00000617445 MROH8Q9H579 483 aa22.77■■□□□ 1.24
CCDC28A-203ENST00000617445 NYAP2Q9P242 653 aa22.77■■□□□ 1.24
CCDC28A-203ENST00000617445 OGDHLQ9ULD0 1010 aa22.77■■□□□ 1.24
CCDC28A-203ENST00000617445 GREB1LQ9C091 1923 aaPredicted RBP22.76■■□□□ 1.23
CCDC28A-203ENST00000617445 SLC3A2P08195 630 aaKnown RBP22.76■■□□□ 1.23
CCDC28A-203ENST00000617445 ZNF444Q8N0Y2 327 aaPredicted RBP22.76■■□□□ 1.23
CCDC28A-203ENST00000617445 EVI5LQ96CN4 794 aa22.76■■□□□ 1.23
CCDC28A-203ENST00000617445 GNL3Q9BVP2 549 aaKnown RBP eCLIP22.76■■□□□ 1.23
CCDC28A-203ENST00000617445 EPB41L4AQ9HCS5 686 aaPredicted RBP22.76■■□□□ 1.23
CCDC28A-203ENST00000617445 ADAMTS5Q9UNA0 930 aa22.76■■□□□ 1.23
CCDC28A-203ENST00000617445 A0A0G2JMZ2 1700 aa22.75■■□□□ 1.23
CCDC28A-203ENST00000617445 CCL14Q16627 93 aa22.75■■□□□ 1.23
CCDC28A-203ENST00000617445 ABRAQ8N0Z2 381 aa22.75■■□□□ 1.23
CCDC28A-203ENST00000617445 PAWRQ96IZ0 340 aaKnown RBP22.75■■□□□ 1.23
CCDC28A-203ENST00000617445 SLC5A4Q9NY91 659 aa22.75■■□□□ 1.23
CCDC28A-203ENST00000617445 SYNPO2Q9UMS6 1093 aa22.75■■□□□ 1.23
CCDC28A-203ENST00000617445 PARP14Q460N5 1801 aa22.74■■□□□ 1.23
CCDC28A-203ENST00000617445 SLC25A27O95847 323 aa22.74■■□□□ 1.23
CCDC28A-203ENST00000617445 ERCC3P19447 782 aa22.74■■□□□ 1.23
CCDC28A-203ENST00000617445 PDE4BQ07343 736 aa22.74■■□□□ 1.23
CCDC28A-203ENST00000617445 DPP9Q86TI2 863 aa22.74■■□□□ 1.23
CCDC28A-203ENST00000617445 ATG4CQ96DT6 458 aa22.74■■□□□ 1.23
CCDC28A-203ENST00000617445 NBPF3Q9H094 633 aa22.74■■□□□ 1.23
CCDC28A-203ENST00000617445 RWDD1Q9H446 243 aaPredicted RBP22.74■■□□□ 1.23
CCDC28A-203ENST00000617445 EVI5O60447 810 aa22.73■■□□□ 1.23
CCDC28A-203ENST00000617445 PDE1AP54750 535 aa22.73■■□□□ 1.23
CCDC28A-203ENST00000617445 PLS1Q14651 629 aa22.73■■□□□ 1.23
CCDC28A-203ENST00000617445 SEC62Q99442 399 aaKnown RBP22.73■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms