RNA–Protein interactions for RNA: ENST00000601912.5

VRK3-225, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,668 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-225ENST00000601912 GREB1LQ9C091 1923 aaPredicted RBP20.87■□□□□ 0.93
VRK3-225ENST00000601912 PRPF3O43395 683 aaKnown RBP20.87■□□□□ 0.93
VRK3-225ENST00000601912 GH2P01242 217 aa20.87■□□□□ 0.93
VRK3-225ENST00000601912 ICA1Q05084 483 aa20.87■□□□□ 0.93
VRK3-225ENST00000601912 SEPT2Q15019 361 aa20.87■□□□□ 0.93
VRK3-225ENST00000601912 CDAN1Q8IWY9 1227 aa20.87■□□□□ 0.93
VRK3-225ENST00000601912 FBXO18Q8NFZ0 1043 aa20.87■□□□□ 0.93
VRK3-225ENST00000601912 TEPSINQ96N21 525 aa20.87■□□□□ 0.93
VRK3-225ENST00000601912 ZSCAN16Q9H4T2 348 aaPredicted RBP20.87■□□□□ 0.93
VRK3-225ENST00000601912 RBM27Q9P2N5 1060 aaKnown RBP20.87■□□□□ 0.93
VRK3-225ENST00000601912 MAD2L2Q9UI95 211 aa20.87■□□□□ 0.93
VRK3-225ENST00000601912 SCAF8Q9UPN6 1271 aaKnown RBP20.87■□□□□ 0.93
VRK3-225ENST00000601912 FUT2Q10981 343 aa20.86■□□□□ 0.93
VRK3-225ENST00000601912 FERMT3Q86UX7 667 aa20.86■□□□□ 0.93
VRK3-225ENST00000601912 CLEC10AQ8IUN9 316 aa20.86■□□□□ 0.93
VRK3-225ENST00000601912 LRRC47Q8N1G4 583 aaKnown RBP20.86■□□□□ 0.93
VRK3-225ENST00000601912 SRBD1Q8N5C6 995 aaKnown RBP20.86■□□□□ 0.93
VRK3-225ENST00000601912 MKL1Q969V6 931 aa20.86■□□□□ 0.93
VRK3-225ENST00000601912 GGA3Q9NZ52 723 aa20.86■□□□□ 0.93
VRK3-225ENST00000601912 PPP2R3BQ9Y5P8 575 aa20.86■□□□□ 0.93
VRK3-225ENST00000601912 PALM3A6NDB9 673 aaPredicted RBP20.86■□□□□ 0.93
VRK3-225ENST00000601912 EEF2P13639 858 aaKnown RBP20.86■□□□□ 0.93
VRK3-225ENST00000601912 PTMSP20962 102 aa20.86■□□□□ 0.93
VRK3-225ENST00000601912 HIRAP54198 1017 aaPredicted RBP20.86■□□□□ 0.93
VRK3-225ENST00000601912 MCTP1Q6DN14 999 aa20.86■□□□□ 0.93
VRK3-225ENST00000601912 L3MBTL3Q96JM7 780 aaPredicted RBP20.86■□□□□ 0.93
VRK3-225ENST00000601912 V9GY48 417 aaPredicted RBP20.86■□□□□ 0.93
VRK3-225ENST00000601912 XBP1P17861 261 aa20.85■□□□□ 0.93
VRK3-225ENST00000601912 GUCY1A2P33402 732 aa20.85■□□□□ 0.93
VRK3-225ENST00000601912 GUCY1B3Q02153 619 aa20.85■□□□□ 0.93
VRK3-225ENST00000601912 STAG2Q8N3U4 1231 aa20.85■□□□□ 0.93
VRK3-225ENST00000601912 PITPNM2Q9BZ72 1349 aa20.85■□□□□ 0.93
VRK3-225ENST00000601912 KLRF2D3W0D1 207 aa20.84■□□□□ 0.93
VRK3-225ENST00000601912 PDHBP11177 359 aa20.84■□□□□ 0.93
VRK3-225ENST00000601912 RRP1BQ14684 758 aaKnown RBP20.84■□□□□ 0.93
VRK3-225ENST00000601912 FOXD4L6Q3SYB3 417 aaPredicted RBP20.84■□□□□ 0.93
VRK3-225ENST00000601912 ASPRV1Q53RT3 343 aa20.84■□□□□ 0.93
VRK3-225ENST00000601912 DCAF15Q66K64 600 aa20.84■□□□□ 0.93
VRK3-225ENST00000601912 FOXD4L3Q6VB84 417 aaPredicted RBP20.84■□□□□ 0.93
VRK3-225ENST00000601912 AIFM3Q96NN9 605 aa20.84■□□□□ 0.93
VRK3-225ENST00000601912 CNTNAP5Q8WYK1 1306 aa20.84■□□□□ 0.93
VRK3-225ENST00000601912 GLTPD2A6NH11 291 aa20.83■□□□□ 0.93
VRK3-225ENST00000601912 USP17L5A8MUK1 530 aa20.83■□□□□ 0.93
VRK3-225ENST00000601912 SMARCA1P28370 1054 aa20.83■□□□□ 0.93
VRK3-225ENST00000601912 CAP2P40123 477 aa20.83■□□□□ 0.93
VRK3-225ENST00000601912 SHROOM1Q2M3G4 852 aaPredicted RBP20.83■□□□□ 0.93
VRK3-225ENST00000601912 USP17L2Q6R6M4 530 aa20.83■□□□□ 0.93
VRK3-225ENST00000601912 ZBTB21Q9ULJ3 1066 aa20.83■□□□□ 0.93
VRK3-225ENST00000601912 SYNPO2Q9UMS6 1093 aa20.83■□□□□ 0.93
VRK3-225ENST00000601912 GOLGA8HP0CJ92 632 aa20.83■□□□□ 0.92
VRK3-225ENST00000601912 SNHG28P0DPA3 235 aa20.83■□□□□ 0.92
VRK3-225ENST00000601912 KRT40Q6A162 431 aa20.83■□□□□ 0.92
VRK3-225ENST00000601912 OTUD7BQ6GQQ9 843 aa20.83■□□□□ 0.92
VRK3-225ENST00000601912 DCPSQ96C86 337 aaKnown RBP20.83■□□□□ 0.92
VRK3-225ENST00000601912 ARHGEF10LQ9HCE6 1279 aa20.83■□□□□ 0.92
VRK3-225ENST00000601912 ASNSP08243 561 aa20.82■□□□□ 0.92
VRK3-225ENST00000601912 JAG1P78504 1218 aa20.82■□□□□ 0.92
VRK3-225ENST00000601912 RESTQ13127 1097 aa20.82■□□□□ 0.92
VRK3-225ENST00000601912 NBPF12Q5TAG4 269 aaPredicted RBP20.82■□□□□ 0.92
VRK3-225ENST00000601912 GINM1Q9NU53 330 aa20.82■□□□□ 0.92
VRK3-225ENST00000601912 MYH4Q9Y623 1939 aa20.82■□□□□ 0.92
VRK3-225ENST00000601912 UBE2Q2LH0YL09 131 aa20.81■□□□□ 0.92
VRK3-225ENST00000601912 SAFBQ15424 915 aaKnown RBP eCLIP20.81■□□□□ 0.92
VRK3-225ENST00000601912 PKN1Q16512 942 aa20.81■□□□□ 0.92
VRK3-225ENST00000601912 GPATCH4Q5T3I0 446 aaKnown RBP20.81■□□□□ 0.92
VRK3-225ENST00000601912 USP50Q70EL3 339 aaPredicted RBP20.81■□□□□ 0.92
VRK3-225ENST00000601912 SIAH1Q8IUQ4 282 aa20.81■□□□□ 0.92
VRK3-225ENST00000601912 SPZ1Q9BXG8 430 aa20.81■□□□□ 0.92
VRK3-225ENST00000601912 PHF20L1A8MW92 1017 aa20.8■□□□□ 0.92
VRK3-225ENST00000601912 NCLP19338 710 aaKnown RBP20.8■□□□□ 0.92
VRK3-225ENST00000601912 SUPT20HL1Q3ZLR7 823 aa20.8■□□□□ 0.92
VRK3-225ENST00000601912 ZNF341Q9BYN7 854 aa20.8■□□□□ 0.92
VRK3-225ENST00000601912 GJB4Q9NTQ9 266 aa20.8■□□□□ 0.92
VRK3-225ENST00000601912 MYH6P13533 1939 aa20.8■□□□□ 0.92
VRK3-225ENST00000601912 hCG_1642624A0A1W2PR95 340 aa20.8■□□□□ 0.92
VRK3-225ENST00000601912 IQCA1LA6NCM1 817 aa20.8■□□□□ 0.92
VRK3-225ENST00000601912 RAD21O60216 631 aa20.8■□□□□ 0.92
VRK3-225ENST00000601912 SCG2P13521 617 aa20.8■□□□□ 0.92
VRK3-225ENST00000601912 EPHX2P34913 555 aa20.8■□□□□ 0.92
VRK3-225ENST00000601912 DNM1Q05193 864 aaKnown RBP20.8■□□□□ 0.92
VRK3-225ENST00000601912 ZNF543Q08ER8 600 aa20.8■□□□□ 0.92
VRK3-225ENST00000601912 GNL2Q13823 731 aaKnown RBP20.8■□□□□ 0.92
VRK3-225ENST00000601912 PFKFB3Q16875 520 aaPredicted RBP20.8■□□□□ 0.92
VRK3-225ENST00000601912 CSPP1Q1MSJ5 1256 aa20.8■□□□□ 0.92
VRK3-225ENST00000601912 CCDC96Q2M329 555 aa20.8■□□□□ 0.92
VRK3-225ENST00000601912 SLFN13Q68D06 897 aa20.8■□□□□ 0.92
VRK3-225ENST00000601912 SULF1Q8IWU6 871 aa20.8■□□□□ 0.92
VRK3-225ENST00000601912 GMCL1P1Q8NEA9 526 aa20.8■□□□□ 0.92
VRK3-225ENST00000601912 DCAF4Q8WV16 495 aa20.8■□□□□ 0.92
VRK3-225ENST00000601912 CTNND1O60716 968 aaKnown RBP20.79■□□□□ 0.92
VRK3-225ENST00000601912 KRT85P78386 507 aa20.79■□□□□ 0.92
VRK3-225ENST00000601912 RASGRP2Q7LDG7 609 aa20.79■□□□□ 0.92
VRK3-225ENST00000601912 BRAPQ7Z569 592 aa20.79■□□□□ 0.92
VRK3-225ENST00000601912 CHAMP1Q96JM3 812 aa20.79■□□□□ 0.92
VRK3-225ENST00000601912 SH2D4AQ9H788 454 aa20.79■□□□□ 0.92
VRK3-225ENST00000601912 FRMPD2Q68DX3 1309 aaPredicted RBP20.79■□□□□ 0.92
VRK3-225ENST00000601912 F5H6K3 240 aa20.78■□□□□ 0.92
VRK3-225ENST00000601912 SLC1A4P43007 532 aa20.78■□□□□ 0.92
VRK3-225ENST00000601912 KLRC3Q07444 240 aa20.78■□□□□ 0.92
VRK3-225ENST00000601912 ZC3H15Q8WU90 426 aaKnown RBP20.78■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms