RNA–Protein interactions for RNA: ENST00000601444.2

SSBP4-210, Transcript of single stranded DNA binding protein 4, humanhuman

TSL 5

Gene SSBP4, Length 427 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP4-210ENST00000601444 PLIN4Q96Q06 1357 aa23.77■■□□□ 1.4
SSBP4-210ENST00000601444 USP17L15C9J2P7 530 aa23.76■■□□□ 1.39
SSBP4-210ENST00000601444 USP17L13C9JLJ4 530 aa23.76■■□□□ 1.39
SSBP4-210ENST00000601444 USP17L11C9JVI0 530 aa23.76■■□□□ 1.39
SSBP4-210ENST00000601444 USP17L18D6R9N7 530 aa23.76■■□□□ 1.39
SSBP4-210ENST00000601444 USP17L22D6RA61 530 aa23.76■■□□□ 1.39
SSBP4-210ENST00000601444 USP17L17D6RBQ6 530 aa23.76■■□□□ 1.39
SSBP4-210ENST00000601444 USP17L19D6RCP7 530 aa23.76■■□□□ 1.39
SSBP4-210ENST00000601444 USP17L20D6RJB6 530 aa23.76■■□□□ 1.39
SSBP4-210ENST00000601444 CTGFP29279 349 aa23.76■■□□□ 1.39
SSBP4-210ENST00000601444 USP17L24Q0WX57 530 aa23.76■■□□□ 1.39
SSBP4-210ENST00000601444 CTU1Q7Z7A3 348 aaKnown RBP23.76■■□□□ 1.39
SSBP4-210ENST00000601444 SH2D4AQ9H788 454 aa23.76■■□□□ 1.39
SSBP4-210ENST00000601444 RAD21O60216 631 aa23.75■■□□□ 1.39
SSBP4-210ENST00000601444 CDC45O75419 566 aa23.75■■□□□ 1.39
SSBP4-210ENST00000601444 HERVK_113P62684 666 aa23.75■■□□□ 1.39
SSBP4-210ENST00000601444 LACTBP83111 547 aaPredicted RBP23.75■■□□□ 1.39
SSBP4-210ENST00000601444 TNS4Q8IZW8 715 aa23.75■■□□□ 1.39
SSBP4-210ENST00000601444 MAP4K1Q92918 833 aa23.75■■□□□ 1.39
SSBP4-210ENST00000601444 ERO1AQ96HE7 468 aa23.75■■□□□ 1.39
SSBP4-210ENST00000601444 LSG1Q9H089 658 aaKnown RBP23.75■■□□□ 1.39
SSBP4-210ENST00000601444 TAF6LQ9Y6J9 622 aa23.75■■□□□ 1.39
SSBP4-210ENST00000601444 TTLL1O95922 423 aa23.74■■□□□ 1.39
SSBP4-210ENST00000601444 LRRC47Q8N1G4 583 aaKnown RBP23.74■■□□□ 1.39
SSBP4-210ENST00000601444 LPAR1Q92633 364 aa23.74■■□□□ 1.39
SSBP4-210ENST00000601444 MKL1Q969V6 931 aa23.74■■□□□ 1.39
SSBP4-210ENST00000601444 MCOLN1Q9GZU1 580 aa23.74■■□□□ 1.39
SSBP4-210ENST00000601444 RNF41Q9H4P4 317 aaPredicted RBP23.74■■□□□ 1.39
SSBP4-210ENST00000601444 TRIM17Q9Y577 477 aa23.74■■□□□ 1.39
SSBP4-210ENST00000601444 U3KPZ7 1027 aaPredicted RBP23.74■■□□□ 1.39
SSBP4-210ENST00000601444 F5H6K3 240 aa23.73■■□□□ 1.39
SSBP4-210ENST00000601444 CYP21A2P08686 494 aa23.73■■□□□ 1.39
SSBP4-210ENST00000601444 KLRC3Q07444 240 aa23.73■■□□□ 1.39
SSBP4-210ENST00000601444 KIAA1211Q6ZU35 1233 aa23.73■■□□□ 1.39
SSBP4-210ENST00000601444 OTOP1Q7RTM1 612 aa23.73■■□□□ 1.39
SSBP4-210ENST00000601444 NUP88Q99567 741 aaPredicted RBP23.73■■□□□ 1.39
SSBP4-210ENST00000601444 TANGO6Q9C0B7 1094 aa23.73■■□□□ 1.39
SSBP4-210ENST00000601444 GOPCQ9HD26 462 aa23.73■■□□□ 1.39
SSBP4-210ENST00000601444 TXNRD2Q9NNW7 524 aa23.73■■□□□ 1.39
SSBP4-210ENST00000601444 STX8Q9UNK0 236 aa23.73■■□□□ 1.39
SSBP4-210ENST00000601444 RBM8AQ9Y5S9 174 aaKnown RBP23.73■■□□□ 1.39
SSBP4-210ENST00000601444 ZSWIM8A7E2V4 1837 aa23.73■■□□□ 1.39
SSBP4-210ENST00000601444 PCP11498 1178 aaKnown RBP23.72■■□□□ 1.39
SSBP4-210ENST00000601444 GCLCP48506 637 aaPredicted RBP23.72■■□□□ 1.39
SSBP4-210ENST00000601444 RBPJLQ9UBG7 517 aa23.72■■□□□ 1.39
SSBP4-210ENST00000601444 LAMA4Q16363 1823 aa23.72■■□□□ 1.39
SSBP4-210ENST00000601444 B4E1Z4 1266 aa23.71■■□□□ 1.39
SSBP4-210ENST00000601444 KDM4AO75164 1064 aa23.71■■□□□ 1.39
SSBP4-210ENST00000601444 NDUFB10O96000 172 aa23.71■■□□□ 1.39
SSBP4-210ENST00000601444 FAM83BQ5T0W9 1011 aa23.71■■□□□ 1.39
SSBP4-210ENST00000601444 CHMP4CQ96CF2 233 aa23.71■■□□□ 1.39
SSBP4-210ENST00000601444 TRIM47Q96LD4 638 aa23.71■■□□□ 1.39
SSBP4-210ENST00000601444 ZKSCAN3Q9BRR0 538 aa23.71■■□□□ 1.39
SSBP4-210ENST00000601444 EFCC1Q9HA90 598 aa23.71■■□□□ 1.39
SSBP4-210ENST00000601444 ANO2Q9NQ90 1003 aa23.71■■□□□ 1.39
SSBP4-210ENST00000601444 WDR46O15213 610 aaKnown RBP23.7■■□□□ 1.38
SSBP4-210ENST00000601444 PSMC4P43686 418 aa23.7■■□□□ 1.38
SSBP4-210ENST00000601444 NOVP48745 357 aa23.7■■□□□ 1.38
SSBP4-210ENST00000601444 FAM110CQ1W6H9 321 aa23.7■■□□□ 1.38
SSBP4-210ENST00000601444 Q3C1V9 767 aa23.7■■□□□ 1.38
SSBP4-210ENST00000601444 ESR2Q92731 530 aa23.7■■□□□ 1.38
SSBP4-210ENST00000601444 PAGR1Q9BTK6 254 aa23.7■■□□□ 1.38
SSBP4-210ENST00000601444 TCP11L1Q9NUJ3 509 aa23.7■■□□□ 1.38
SSBP4-210ENST00000601444 FBXO28Q9NVF7 368 aa23.7■■□□□ 1.38
SSBP4-210ENST00000601444 SPDYE16A6NNV3 312 aaPredicted RBP23.69■■□□□ 1.38
SSBP4-210ENST00000601444 CNMDO75829 334 aa23.69■■□□□ 1.38
SSBP4-210ENST00000601444 COG2Q14746 738 aa23.69■■□□□ 1.38
SSBP4-210ENST00000601444 KIF22Q14807 665 aa23.69■■□□□ 1.38
SSBP4-210ENST00000601444 SAMD1Q6SPF0 538 aaPredicted RBP23.69■■□□□ 1.38
SSBP4-210ENST00000601444 CASC1Q6TDU7 716 aa23.69■■□□□ 1.38
SSBP4-210ENST00000601444 ZSWIM5Q9P217 1185 aa23.69■■□□□ 1.38
SSBP4-210ENST00000601444 MORF4L1Q9UBU8 362 aa23.69■■□□□ 1.38
SSBP4-210ENST00000601444 FLOT1O75955 427 aa23.68■■□□□ 1.38
SSBP4-210ENST00000601444 FMNL1O95466 1100 aaPredicted RBP23.68■■□□□ 1.38
SSBP4-210ENST00000601444 RCSD1Q6JBY9 416 aa23.68■■□□□ 1.38
SSBP4-210ENST00000601444 STOX1Q6ZVD7 989 aa23.68■■□□□ 1.38
SSBP4-210ENST00000601444 RASGRP2Q7LDG7 609 aa23.68■■□□□ 1.38
SSBP4-210ENST00000601444 BTBD7Q9P203 1132 aa23.68■■□□□ 1.38
SSBP4-210ENST00000601444 DSG3P32926 999 aa23.67■■□□□ 1.38
SSBP4-210ENST00000601444 SLFN13Q68D06 897 aa23.67■■□□□ 1.38
SSBP4-210ENST00000601444 GMCL1P1Q8NEA9 526 aa23.67■■□□□ 1.38
SSBP4-210ENST00000601444 TMEM47Q9BQJ4 181 aa23.67■■□□□ 1.38
SSBP4-210ENST00000601444 SYNPO2Q9UMS6 1093 aa23.67■■□□□ 1.38
SSBP4-210ENST00000601444 MYH4Q9Y623 1939 aa23.67■■□□□ 1.38
SSBP4-210ENST00000601444 E7EWF7 191 aa23.66■■□□□ 1.38
SSBP4-210ENST00000601444 ERVK-9P63128 1117 aa23.66■■□□□ 1.38
SSBP4-210ENST00000601444 ERVK-24P63145 666 aa23.66■■□□□ 1.38
SSBP4-210ENST00000601444 LBX2Q6XYB7 198 aa23.66■■□□□ 1.38
SSBP4-210ENST00000601444 CYB5R4Q7L1T6 521 aa23.66■■□□□ 1.38
SSBP4-210ENST00000601444 GPRC5AQ8NFJ5 357 aa23.66■■□□□ 1.38
SSBP4-210ENST00000601444 ATG4CQ96DT6 458 aa23.66■■□□□ 1.38
SSBP4-210ENST00000601444 KRT23Q9C075 422 aa23.66■■□□□ 1.38
SSBP4-210ENST00000601444 HOXC10Q9NYD6 342 aa23.66■■□□□ 1.38
SSBP4-210ENST00000601444 MTMR7Q9Y216 660 aa23.66■■□□□ 1.38
SSBP4-210ENST00000601444 PTPN22Q9Y2R2 807 aa23.66■■□□□ 1.38
SSBP4-210ENST00000601444 SLC27A2O14975 620 aa23.65■■□□□ 1.38
SSBP4-210ENST00000601444 MCCP23508 829 aa23.65■■□□□ 1.38
SSBP4-210ENST00000601444 FCGRTP55899 365 aa23.65■■□□□ 1.38
SSBP4-210ENST00000601444 NECTIN1Q15223 517 aa23.65■■□□□ 1.38
SSBP4-210ENST00000601444 PKN2Q16513 984 aaKnown RBP23.65■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms