RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 TMX2Q9Y320 296 aa16.39■□□□□ 0.21
TRIM28-211ENST00000597968 CEP290O15078 2479 aa16.39■□□□□ 0.21
TRIM28-211ENST00000597968 A0A1W2PRG0 241 aa16.38■□□□□ 0.21
TRIM28-211ENST00000597968 WDR46O15213 610 aaKnown RBP16.38■□□□□ 0.21
TRIM28-211ENST00000597968 MBD4O95243 580 aa16.38■□□□□ 0.21
TRIM28-211ENST00000597968 OLFML2BQ68BL8 750 aa16.38■□□□□ 0.21
TRIM28-211ENST00000597968 GPR153Q6NV75 609 aa16.38■□□□□ 0.21
TRIM28-211ENST00000597968 GIMAP6Q6P9H5 292 aa16.38■□□□□ 0.21
TRIM28-211ENST00000597968 C16orf86Q6ZW13 317 aa16.38■□□□□ 0.21
TRIM28-211ENST00000597968 DIS3LQ8TF46 1054 aaKnown RBP16.38■□□□□ 0.21
TRIM28-211ENST00000597968 GPATCH3Q96I76 525 aa16.38■□□□□ 0.21
TRIM28-211ENST00000597968 GDF15Q99988 308 aa16.38■□□□□ 0.21
TRIM28-211ENST00000597968 MROH8Q9H579 483 aa16.38■□□□□ 0.21
TRIM28-211ENST00000597968 VCPKMTQ9H867 229 aa16.38■□□□□ 0.21
TRIM28-211ENST00000597968 BTBD7Q9P203 1132 aa16.38■□□□□ 0.21
TRIM28-211ENST00000597968 PEX10O60683 326 aa16.37■□□□□ 0.21
TRIM28-211ENST00000597968 IGHA2P01877 340 aa16.37■□□□□ 0.21
TRIM28-211ENST00000597968 ATP2B2Q01814 1243 aa16.37■□□□□ 0.21
TRIM28-211ENST00000597968 ICA1Q05084 483 aa16.37■□□□□ 0.21
TRIM28-211ENST00000597968 LRRFIP1Q32MZ4 808 aaKnown RBP16.37■□□□□ 0.21
TRIM28-211ENST00000597968 SPATC1LQ9H0A9 340 aa16.37■□□□□ 0.21
TRIM28-211ENST00000597968 KANSL2Q9H9L4 492 aa16.37■□□□□ 0.21
TRIM28-211ENST00000597968 ECHDC1Q9NTX5 307 aa16.37■□□□□ 0.21
TRIM28-211ENST00000597968 ARPP21Q9UBL0 812 aaPredicted RBP16.37■□□□□ 0.21
TRIM28-211ENST00000597968 LAMA3Q16787 3333 aa16.36■□□□□ 0.21
TRIM28-211ENST00000597968 USP17L12C9JPN9 530 aa16.36■□□□□ 0.21
TRIM28-211ENST00000597968 USP17L21D6R901 530 aa16.36■□□□□ 0.21
TRIM28-211ENST00000597968 ZFYP08048 801 aaPredicted RBP16.36■□□□□ 0.21
TRIM28-211ENST00000597968 DSG3P32926 999 aa16.36■□□□□ 0.21
TRIM28-211ENST00000597968 CDK8P49336 464 aa16.36■□□□□ 0.21
TRIM28-211ENST00000597968 CCL14Q16627 93 aa16.36■□□□□ 0.21
TRIM28-211ENST00000597968 WDR78Q5VTH9 848 aa16.36■□□□□ 0.21
TRIM28-211ENST00000597968 MOV10L1Q9BXT6 1211 aaKnown RBP16.36■□□□□ 0.21
TRIM28-211ENST00000597968 TANGO6Q9C0B7 1094 aa16.36■□□□□ 0.21
TRIM28-211ENST00000597968 ZNF236Q9UL36 1845 aa16.35■□□□□ 0.21
TRIM28-211ENST00000597968 SLC25A27O95847 323 aa16.35■□□□□ 0.21
TRIM28-211ENST00000597968 CCND3P30281 292 aaPredicted RBP16.35■□□□□ 0.21
TRIM28-211ENST00000597968 COPB2P35606 906 aa16.35■□□□□ 0.21
TRIM28-211ENST00000597968 SBK1Q52WX2 424 aa16.35■□□□□ 0.21
TRIM28-211ENST00000597968 DPP9Q86TI2 863 aa16.35■□□□□ 0.21
TRIM28-211ENST00000597968 BCL11AQ9H165 835 aa16.35■□□□□ 0.21
TRIM28-211ENST00000597968 DCTPP1Q9H773 170 aa16.35■□□□□ 0.21
TRIM28-211ENST00000597968 DDX20Q9UHI6 824 aaKnown RBP16.35■□□□□ 0.21
TRIM28-211ENST00000597968 NRBP1Q9UHY1 535 aa16.35■□□□□ 0.21
TRIM28-211ENST00000597968 ADAMTS5Q9UNA0 930 aa16.35■□□□□ 0.21
TRIM28-211ENST00000597968 SLC4A4Q9Y6R1 1079 aa16.35■□□□□ 0.21
TRIM28-211ENST00000597968 PFASO15067 1338 aa16.35■□□□□ 0.21
TRIM28-211ENST00000597968 PRKAB2O43741 272 aa16.34■□□□□ 0.21
TRIM28-211ENST00000597968 AKR1B1P15121 316 aa16.34■□□□□ 0.21
TRIM28-211ENST00000597968 GNAT2P19087 354 aa16.34■□□□□ 0.21
TRIM28-211ENST00000597968 C20orf194Q5TEA3 1177 aa16.34■□□□□ 0.21
TRIM28-211ENST00000597968 SIAH1Q8IUQ4 282 aa16.34■□□□□ 0.21
TRIM28-211ENST00000597968 C7orf61Q8IZ16 206 aa16.34■□□□□ 0.21
TRIM28-211ENST00000597968 KBTBD3Q8NAB2 608 aa16.34■□□□□ 0.21
TRIM28-211ENST00000597968 DYNLL2Q96FJ2 89 aa16.34■□□□□ 0.21
TRIM28-211ENST00000597968 ZNF287Q9HBT7 754 aa16.34■□□□□ 0.21
TRIM28-211ENST00000597968 GOPCQ9HD26 462 aa16.34■□□□□ 0.21
TRIM28-211ENST00000597968 STAP2Q9UGK3 403 aa16.34■□□□□ 0.21
TRIM28-211ENST00000597968 A0A0G2JMZ2 1700 aa16.33■□□□□ 0.21
TRIM28-211ENST00000597968 TRIOBPQ9H2D6 2365 aa16.33■□□□□ 0.2
TRIM28-211ENST00000597968 DNM1LO00429 736 aa16.33■□□□□ 0.2
TRIM28-211ENST00000597968 FLOT1O75955 427 aa16.33■□□□□ 0.2
TRIM28-211ENST00000597968 CYP2D6P10635 497 aa16.33■□□□□ 0.2
TRIM28-211ENST00000597968 ERCC3P19447 782 aa16.33■□□□□ 0.2
TRIM28-211ENST00000597968 ADORA2AP29274 412 aa16.33■□□□□ 0.2
TRIM28-211ENST00000597968 CTR9Q6PD62 1173 aa16.33■□□□□ 0.2
TRIM28-211ENST00000597968 SLC44A5Q8NCS7 719 aa16.33■□□□□ 0.2
TRIM28-211ENST00000597968 PUS7LQ9H0K6 701 aaKnown RBP16.33■□□□□ 0.2
TRIM28-211ENST00000597968 SYNPO2Q9UMS6 1093 aa16.33■□□□□ 0.2
TRIM28-211ENST00000597968 CYBAP13498 195 aa16.32■□□□□ 0.2
TRIM28-211ENST00000597968 LRIT3Q3SXY7 679 aa16.32■□□□□ 0.2
TRIM28-211ENST00000597968 ARRDC4Q8NCT1 418 aa16.32■□□□□ 0.2
TRIM28-211ENST00000597968 NPLOC4Q8TAT6 608 aa16.32■□□□□ 0.2
TRIM28-211ENST00000597968 APPBP2Q92624 585 aa16.32■□□□□ 0.2
TRIM28-211ENST00000597968 STRBPQ96SI9 672 aaKnown RBP16.32■□□□□ 0.2
TRIM28-211ENST00000597968 FLRT1Q9NZU1 646 aa16.32■□□□□ 0.2
TRIM28-211ENST00000597968 DIS3Q9Y2L1 958 aaKnown RBP16.32■□□□□ 0.2
TRIM28-211ENST00000597968 ROBO3Q96MS0 1386 aa16.31■□□□□ 0.2
TRIM28-211ENST00000597968 TTC41PQ6P2S7 1318 aa16.31■□□□□ 0.2
TRIM28-211ENST00000597968 SEPT4O43236 478 aa16.31■□□□□ 0.2
TRIM28-211ENST00000597968 FCER1AP12319 257 aa16.31■□□□□ 0.2
TRIM28-211ENST00000597968 EEF2P13639 858 aaKnown RBP16.31■□□□□ 0.2
TRIM28-211ENST00000597968 EVX2Q03828 476 aa16.31■□□□□ 0.2
TRIM28-211ENST00000597968 RIOX2Q8IUF8 465 aa16.31■□□□□ 0.2
TRIM28-211ENST00000597968 ALPK3Q96L96 1907 aa16.3■□□□□ 0.2
TRIM28-211ENST00000597968 ERC2O15083 957 aa16.3■□□□□ 0.2
TRIM28-211ENST00000597968 CNGA1P29973 690 aa16.3■□□□□ 0.2
TRIM28-211ENST00000597968 KIAA1755Q5JYT7 1200 aa16.3■□□□□ 0.2
TRIM28-211ENST00000597968 TDHQ8IZJ6 230 aa16.3■□□□□ 0.2
TRIM28-211ENST00000597968 ATG4CQ96DT6 458 aa16.3■□□□□ 0.2
TRIM28-211ENST00000597968 NYAP2Q9P242 653 aa16.3■□□□□ 0.2
TRIM28-211ENST00000597968 RLFQ13129 1914 aa16.29■□□□□ 0.2
TRIM28-211ENST00000597968 DNAH12Q6ZR08 3092 aa16.29■□□□□ 0.2
TRIM28-211ENST00000597968 RNF113AO15541 343 aaKnown RBP16.29■□□□□ 0.2
TRIM28-211ENST00000597968 CYP2C19P33261 490 aa16.29■□□□□ 0.2
TRIM28-211ENST00000597968 MAGEA10P43363 369 aaPredicted RBP16.29■□□□□ 0.2
TRIM28-211ENST00000597968 NCAPG2Q86XI2 1143 aa16.29■□□□□ 0.2
TRIM28-211ENST00000597968 SPICE1Q8N0Z3 855 aa16.29■□□□□ 0.2
TRIM28-211ENST00000597968 MSL3Q8N5Y2 521 aaKnown RBP16.29■□□□□ 0.2
TRIM28-211ENST00000597968 MKNK2Q9HBH9 465 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms