RNA–Protein interactions for RNA: ENST00000597396.5

SHKBP1-214, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 1,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-214ENST00000597396 VCPKMTQ9H867 229 aa23.23■■□□□ 1.31
SHKBP1-214ENST00000597396 GOPCQ9HD26 462 aa23.23■■□□□ 1.31
SHKBP1-214ENST00000597396 CLIP2Q9UDT6 1046 aa23.23■■□□□ 1.31
SHKBP1-214ENST00000597396 FKTNO75072 461 aa23.22■■□□□ 1.31
SHKBP1-214ENST00000597396 CYP21A2P08686 494 aa23.22■■□□□ 1.31
SHKBP1-214ENST00000597396 HOXA7P31268 230 aaPredicted RBP23.22■■□□□ 1.31
SHKBP1-214ENST00000597396 ZNF296Q8WUU4 475 aaPredicted RBP23.22■■□□□ 1.31
SHKBP1-214ENST00000597396 LPAR1Q92633 364 aa23.22■■□□□ 1.31
SHKBP1-214ENST00000597396 KRT23Q9C075 422 aa23.22■■□□□ 1.31
SHKBP1-214ENST00000597396 ASCC2Q9H1I8 757 aaPredicted RBP23.22■■□□□ 1.31
SHKBP1-214ENST00000597396 CNNM2Q9H8M5 875 aa23.22■■□□□ 1.31
SHKBP1-214ENST00000597396 B4E1Z4 1266 aa23.21■■□□□ 1.31
SHKBP1-214ENST00000597396 USP17L15C9J2P7 530 aa23.21■■□□□ 1.31
SHKBP1-214ENST00000597396 USP17L13C9JLJ4 530 aa23.21■■□□□ 1.31
SHKBP1-214ENST00000597396 USP17L11C9JVI0 530 aa23.21■■□□□ 1.31
SHKBP1-214ENST00000597396 USP17L18D6R9N7 530 aa23.21■■□□□ 1.31
SHKBP1-214ENST00000597396 USP17L22D6RA61 530 aa23.21■■□□□ 1.31
SHKBP1-214ENST00000597396 USP17L17D6RBQ6 530 aa23.21■■□□□ 1.31
SHKBP1-214ENST00000597396 USP17L19D6RCP7 530 aa23.21■■□□□ 1.31
SHKBP1-214ENST00000597396 USP17L20D6RJB6 530 aa23.21■■□□□ 1.31
SHKBP1-214ENST00000597396 NT5C2P49902 561 aa23.21■■□□□ 1.31
SHKBP1-214ENST00000597396 USP17L24Q0WX57 530 aa23.21■■□□□ 1.31
SHKBP1-214ENST00000597396 CTU1Q7Z7A3 348 aaKnown RBP23.21■■□□□ 1.31
SHKBP1-214ENST00000597396 RPAP3Q9H6T3 665 aaPredicted RBP23.21■■□□□ 1.31
SHKBP1-214ENST00000597396 CPA4Q9UI42 421 aa23.21■■□□□ 1.31
SHKBP1-214ENST00000597396 STX8Q9UNK0 236 aa23.21■■□□□ 1.31
SHKBP1-214ENST00000597396 PARP14Q460N5 1801 aa23.21■■□□□ 1.31
SHKBP1-214ENST00000597396 MGAMO43451 1857 aa23.2■■□□□ 1.3
SHKBP1-214ENST00000597396 ADGRA2Q96PE1 1338 aa23.2■■□□□ 1.3
SHKBP1-214ENST00000597396 NMT2O60551 498 aa23.2■■□□□ 1.3
SHKBP1-214ENST00000597396 KDM4AO75164 1064 aa23.2■■□□□ 1.3
SHKBP1-214ENST00000597396 TRDNQ13061 729 aa23.2■■□□□ 1.3
SHKBP1-214ENST00000597396 SPICE1Q8N0Z3 855 aa23.2■■□□□ 1.3
SHKBP1-214ENST00000597396 SP3Q02447 781 aa23.19■■□□□ 1.3
SHKBP1-214ENST00000597396 KIAA1755Q5JYT7 1200 aa23.19■■□□□ 1.3
SHKBP1-214ENST00000597396 LRRC47Q8N1G4 583 aaKnown RBP23.19■■□□□ 1.3
SHKBP1-214ENST00000597396 TANGO6Q9C0B7 1094 aa23.19■■□□□ 1.3
SHKBP1-214ENST00000597396 IL17RBQ9NRM6 502 aa23.19■■□□□ 1.3
SHKBP1-214ENST00000597396 WDR46O15213 610 aaKnown RBP23.18■■□□□ 1.3
SHKBP1-214ENST00000597396 C17orf99Q6UX52 265 aa23.18■■□□□ 1.3
SHKBP1-214ENST00000597396 CATSPERGQ6ZRH7 1159 aa23.18■■□□□ 1.3
SHKBP1-214ENST00000597396 IQCA1Q86XH1 822 aa23.18■■□□□ 1.3
SHKBP1-214ENST00000597396 MKL1Q969V6 931 aa23.18■■□□□ 1.3
SHKBP1-214ENST00000597396 TCP11L1Q9NUJ3 509 aa23.18■■□□□ 1.3
SHKBP1-214ENST00000597396 SYNPO2Q9UMS6 1093 aa23.18■■□□□ 1.3
SHKBP1-214ENST00000597396 RLFQ13129 1914 aa23.18■■□□□ 1.3
SHKBP1-214ENST00000597396 E7EWF7 191 aa23.17■■□□□ 1.3
SHKBP1-214ENST00000597396 F5H6K3 240 aa23.17■■□□□ 1.3
SHKBP1-214ENST00000597396 GCLCP48506 637 aaPredicted RBP23.17■■□□□ 1.3
SHKBP1-214ENST00000597396 KLRC3Q07444 240 aa23.17■■□□□ 1.3
SHKBP1-214ENST00000597396 RALYLQ86SE5 291 aaKnown RBP23.17■■□□□ 1.3
SHKBP1-214ENST00000597396 ERO1AQ96HE7 468 aa23.17■■□□□ 1.3
SHKBP1-214ENST00000597396 P2RX7Q99572 595 aaKnown RBP23.17■■□□□ 1.3
SHKBP1-214ENST00000597396 ZSWIM8A7E2V4 1837 aa23.17■■□□□ 1.3
SHKBP1-214ENST00000597396 SLC27A2O14975 620 aa23.16■■□□□ 1.3
SHKBP1-214ENST00000597396 REC8O95072 547 aa23.16■■□□□ 1.3
SHKBP1-214ENST00000597396 HERVK_113P62684 666 aa23.16■■□□□ 1.3
SHKBP1-214ENST00000597396 CCDC178Q5BJE1 867 aa23.16■■□□□ 1.3
SHKBP1-214ENST00000597396 RNF20Q5VTR2 975 aa23.16■■□□□ 1.3
SHKBP1-214ENST00000597396 CREB3L3Q68CJ9 461 aa23.16■■□□□ 1.3
SHKBP1-214ENST00000597396 NKX2-3Q8TAU0 364 aa23.16■■□□□ 1.3
SHKBP1-214ENST00000597396 ZKSCAN3Q9BRR0 538 aa23.16■■□□□ 1.3
SHKBP1-214ENST00000597396 COL11A1P12107 1806 aaPredicted RBP23.15■■□□□ 1.3
SHKBP1-214ENST00000597396 NDUFB10O96000 172 aa23.15■■□□□ 1.3
SHKBP1-214ENST00000597396 BCRP11274 1271 aa23.15■■□□□ 1.3
SHKBP1-214ENST00000597396 KIF22Q14807 665 aa23.15■■□□□ 1.3
SHKBP1-214ENST00000597396 NECTIN1Q15223 517 aa23.15■■□□□ 1.3
SHKBP1-214ENST00000597396 FAM83BQ5T0W9 1011 aa23.15■■□□□ 1.3
SHKBP1-214ENST00000597396 ANKRD13CQ8N6S4 541 aa23.15■■□□□ 1.3
SHKBP1-214ENST00000597396 NCOA7Q8NI08 942 aa23.15■■□□□ 1.3
SHKBP1-214ENST00000597396 CD99L2Q8TCZ2 262 aa23.15■■□□□ 1.3
SHKBP1-214ENST00000597396 GTF3C2Q8WUA4 911 aaPredicted RBP23.15■■□□□ 1.3
SHKBP1-214ENST00000597396 ZSWIM5Q9P217 1185 aa23.15■■□□□ 1.3
SHKBP1-214ENST00000597396 TAF6LQ9Y6J9 622 aa23.15■■□□□ 1.3
SHKBP1-214ENST00000597396 TOP1P11387 765 aaKnown RBP23.14■■□□□ 1.29
SHKBP1-214ENST00000597396 SLFN13Q68D06 897 aa23.14■■□□□ 1.29
SHKBP1-214ENST00000597396 SAMD1Q6SPF0 538 aaPredicted RBP23.14■■□□□ 1.29
SHKBP1-214ENST00000597396 STOX1Q6ZVD7 989 aa23.14■■□□□ 1.29
SHKBP1-214ENST00000597396 GMCL1P1Q8NEA9 526 aa23.14■■□□□ 1.29
SHKBP1-214ENST00000597396 TTC14Q96N46 770 aa23.14■■□□□ 1.29
SHKBP1-214ENST00000597396 UBAC1Q9BSL1 405 aa23.14■■□□□ 1.29
SHKBP1-214ENST00000597396 ISY1Q9ULR0 285 aaKnown RBP23.14■■□□□ 1.29
SHKBP1-214ENST00000597396 GTF3C3Q9Y5Q9 886 aa23.14■■□□□ 1.29
SHKBP1-214ENST00000597396 FLOT1O75955 427 aa23.13■■□□□ 1.29
SHKBP1-214ENST00000597396 NOVP48745 357 aa23.13■■□□□ 1.29
SHKBP1-214ENST00000597396 SOX10P56693 466 aa23.13■■□□□ 1.29
SHKBP1-214ENST00000597396 COG2Q14746 738 aa23.13■■□□□ 1.29
SHKBP1-214ENST00000597396 FAM110CQ1W6H9 321 aa23.13■■□□□ 1.29
SHKBP1-214ENST00000597396 ZSCAN10Q96SZ4 725 aaPredicted RBP23.13■■□□□ 1.29
SHKBP1-214ENST00000597396 NUP88Q99567 741 aaPredicted RBP23.13■■□□□ 1.29
SHKBP1-214ENST00000597396 PAGR1Q9BTK6 254 aa23.13■■□□□ 1.29
SHKBP1-214ENST00000597396 MTMR7Q9Y216 660 aa23.13■■□□□ 1.29
SHKBP1-214ENST00000597396 A0A0G2JMZ2 1700 aa23.12■■□□□ 1.29
SHKBP1-214ENST00000597396 ECM2O94769 699 aaPredicted RBP23.12■■□□□ 1.29
SHKBP1-214ENST00000597396 LACTBP83111 547 aaPredicted RBP23.12■■□□□ 1.29
SHKBP1-214ENST00000597396 ARHGEF6Q15052 776 aa23.12■■□□□ 1.29
SHKBP1-214ENST00000597396 CYB5R4Q7L1T6 521 aa23.12■■□□□ 1.29
SHKBP1-214ENST00000597396 DOCK3Q8IZD9 2030 aa23.12■■□□□ 1.29
SHKBP1-214ENST00000597396 TMEM47Q9BQJ4 181 aa23.12■■□□□ 1.29
SHKBP1-214ENST00000597396 HOXC10Q9NYD6 342 aa23.12■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms