RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 MFSD6Q6ZSS7 791 aa20.47■□□□□ 0.87
SHKBP1-212ENST00000596163 CLEC10AQ8IUN9 316 aa20.47■□□□□ 0.87
SHKBP1-212ENST00000596163 RPAP3Q9H6T3 665 aaPredicted RBP20.47■□□□□ 0.87
SHKBP1-212ENST00000596163 HOXC10Q9NYD6 342 aa20.47■□□□□ 0.87
SHKBP1-212ENST00000596163 SYNPO2Q9UMS6 1093 aa20.47■□□□□ 0.87
SHKBP1-212ENST00000596163 IGKV6D-41A0A0C4DH26 115 aa20.46■□□□□ 0.87
SHKBP1-212ENST00000596163 TTLL1O95922 423 aa20.46■□□□□ 0.87
SHKBP1-212ENST00000596163 PSMC4P43686 418 aa20.46■□□□□ 0.87
SHKBP1-212ENST00000596163 FCGRTP55899 365 aa20.46■□□□□ 0.87
SHKBP1-212ENST00000596163 HAND2P61296 217 aa20.46■□□□□ 0.87
SHKBP1-212ENST00000596163 FAM47AQ5JRC9 791 aa20.46■□□□□ 0.87
SHKBP1-212ENST00000596163 AKNAD1Q5T1N1 836 aa20.46■□□□□ 0.87
SHKBP1-212ENST00000596163 ANKRD13CQ8N6S4 541 aa20.46■□□□□ 0.87
SHKBP1-212ENST00000596163 MTMR4Q9NYA4 1195 aa20.46■□□□□ 0.87
SHKBP1-212ENST00000596163 CLIP2Q9UDT6 1046 aa20.46■□□□□ 0.87
SHKBP1-212ENST00000596163 LOC285556D6RIA3 1793 aa20.45■□□□□ 0.86
SHKBP1-212ENST00000596163 WDR46O15213 610 aaKnown RBP20.45■□□□□ 0.86
SHKBP1-212ENST00000596163 SGSM2O43147 1006 aa20.45■□□□□ 0.86
SHKBP1-212ENST00000596163 RAD21O60216 631 aa20.45■□□□□ 0.86
SHKBP1-212ENST00000596163 COG2Q14746 738 aa20.45■□□□□ 0.86
SHKBP1-212ENST00000596163 CASC1Q6TDU7 716 aa20.45■□□□□ 0.86
SHKBP1-212ENST00000596163 KIAA1211Q6ZU35 1233 aa20.45■□□□□ 0.86
SHKBP1-212ENST00000596163 STAG1Q8WVM7 1258 aa20.45■□□□□ 0.86
SHKBP1-212ENST00000596163 MKL1Q969V6 931 aa20.45■□□□□ 0.86
SHKBP1-212ENST00000596163 CEP95Q96GE4 821 aa20.45■□□□□ 0.86
SHKBP1-212ENST00000596163 ABHD8Q96I13 439 aa20.45■□□□□ 0.86
SHKBP1-212ENST00000596163 TANGO6Q9C0B7 1094 aa20.45■□□□□ 0.86
SHKBP1-212ENST00000596163 MORF4L1Q9UBU8 362 aa20.45■□□□□ 0.86
SHKBP1-212ENST00000596163 PTPRFP10586 1907 aa20.45■□□□□ 0.86
SHKBP1-212ENST00000596163 PLIN4Q96Q06 1357 aa20.45■□□□□ 0.86
SHKBP1-212ENST00000596163 CAPN15O75808 1086 aa20.44■□□□□ 0.86
SHKBP1-212ENST00000596163 RRP12Q5JTH9 1297 aaKnown RBP20.44■□□□□ 0.86
SHKBP1-212ENST00000596163 GPRC5AQ8NFJ5 357 aa20.44■□□□□ 0.86
SHKBP1-212ENST00000596163 INCENPQ9NQS7 918 aa20.44■□□□□ 0.86
SHKBP1-212ENST00000596163 PTPN22Q9Y2R2 807 aa20.44■□□□□ 0.86
SHKBP1-212ENST00000596163 LBX2Q6XYB7 198 aa20.43■□□□□ 0.86
SHKBP1-212ENST00000596163 SPICE1Q8N0Z3 855 aa20.43■□□□□ 0.86
SHKBP1-212ENST00000596163 ESR2Q92731 530 aa20.43■□□□□ 0.86
SHKBP1-212ENST00000596163 RABGAP1Q9Y3P9 1069 aa20.43■□□□□ 0.86
SHKBP1-212ENST00000596163 U3KPZ7 1027 aaPredicted RBP20.43■□□□□ 0.86
SHKBP1-212ENST00000596163 F5H6K3 240 aa20.42■□□□□ 0.86
SHKBP1-212ENST00000596163 KLRC3Q07444 240 aa20.42■□□□□ 0.86
SHKBP1-212ENST00000596163 SKAP1Q86WV1 359 aa20.42■□□□□ 0.86
SHKBP1-212ENST00000596163 CCAR1Q8IX12 1150 aaKnown RBP20.42■□□□□ 0.86
SHKBP1-212ENST00000596163 COA7Q96BR5 231 aa20.42■□□□□ 0.86
SHKBP1-212ENST00000596163 TRIM47Q96LD4 638 aa20.42■□□□□ 0.86
SHKBP1-212ENST00000596163 ARHGAP39Q9C0H5 1083 aa20.42■□□□□ 0.86
SHKBP1-212ENST00000596163 TCP11L1Q9NUJ3 509 aa20.42■□□□□ 0.86
SHKBP1-212ENST00000596163 RBPJLQ9UBG7 517 aa20.42■□□□□ 0.86
SHKBP1-212ENST00000596163 MYH8P13535 1937 aa20.41■□□□□ 0.86
SHKBP1-212ENST00000596163 TNPO2O14787 897 aaKnown RBP20.41■□□□□ 0.86
SHKBP1-212ENST00000596163 CCNA1P78396 465 aa20.41■□□□□ 0.86
SHKBP1-212ENST00000596163 CCDC178Q5BJE1 867 aa20.41■□□□□ 0.86
SHKBP1-212ENST00000596163 PAGR1Q9BTK6 254 aa20.41■□□□□ 0.86
SHKBP1-212ENST00000596163 KRT23Q9C075 422 aa20.41■□□□□ 0.86
SHKBP1-212ENST00000596163 IL25Q9H293 177 aa20.41■□□□□ 0.86
SHKBP1-212ENST00000596163 CNNM2Q9H8M5 875 aa20.41■□□□□ 0.86
SHKBP1-212ENST00000596163 SRRDQ9UH36 339 aa20.41■□□□□ 0.86
SHKBP1-212ENST00000596163 STX8Q9UNK0 236 aa20.41■□□□□ 0.86
SHKBP1-212ENST00000596163 HPS5Q9UPZ3 1129 aa20.41■□□□□ 0.86
SHKBP1-212ENST00000596163 MYPNQ86TC9 1320 aa20.41■□□□□ 0.86
SHKBP1-212ENST00000596163 FLOT1O75955 427 aa20.4■□□□□ 0.86
SHKBP1-212ENST00000596163 ECM2O94769 699 aaPredicted RBP20.4■□□□□ 0.86
SHKBP1-212ENST00000596163 DSG3P32926 999 aa20.4■□□□□ 0.86
SHKBP1-212ENST00000596163 ERVK-9P63128 1117 aa20.4■□□□□ 0.86
SHKBP1-212ENST00000596163 ERVK-24P63145 666 aa20.4■□□□□ 0.86
SHKBP1-212ENST00000596163 KIAA1755Q5JYT7 1200 aa20.4■□□□□ 0.86
SHKBP1-212ENST00000596163 TBC1D10CQ8IV04 446 aa20.4■□□□□ 0.86
SHKBP1-212ENST00000596163 MB21D1Q8N884 522 aa20.4■□□□□ 0.86
SHKBP1-212ENST00000596163 GMCL1P1Q8NEA9 526 aa20.4■□□□□ 0.86
SHKBP1-212ENST00000596163 ESYT1Q9BSJ8 1104 aa20.4■□□□□ 0.86
SHKBP1-212ENST00000596163 NBPF3Q9H094 633 aa20.4■□□□□ 0.86
SHKBP1-212ENST00000596163 TACC3Q9Y6A5 838 aa20.4■□□□□ 0.86
SHKBP1-212ENST00000596163 SPDYE16A6NNV3 312 aaPredicted RBP20.39■□□□□ 0.85
SHKBP1-212ENST00000596163 CDC45O75419 566 aa20.39■□□□□ 0.85
SHKBP1-212ENST00000596163 MAPK4P31152 587 aa20.39■□□□□ 0.85
SHKBP1-212ENST00000596163 TTC14Q96N46 770 aa20.39■□□□□ 0.85
SHKBP1-212ENST00000596163 CWC22Q9HCG8 908 aaKnown RBP20.39■□□□□ 0.85
SHKBP1-212ENST00000596163 IL17RBQ9NRM6 502 aa20.39■□□□□ 0.85
SHKBP1-212ENST00000596163 NDUFB10O96000 172 aa20.38■□□□□ 0.85
SHKBP1-212ENST00000596163 CTGFP29279 349 aa20.38■□□□□ 0.85
SHKBP1-212ENST00000596163 CAP1Q01518 475 aa20.38■□□□□ 0.85
SHKBP1-212ENST00000596163 PTH1RQ03431 593 aa20.38■□□□□ 0.85
SHKBP1-212ENST00000596163 TRDNQ13061 729 aa20.38■□□□□ 0.85
SHKBP1-212ENST00000596163 FAM83BQ5T0W9 1011 aa20.38■□□□□ 0.85
SHKBP1-212ENST00000596163 SLFN13Q68D06 897 aa20.38■□□□□ 0.85
SHKBP1-212ENST00000596163 NBPF11Q86T75 865 aa20.38■□□□□ 0.85
SHKBP1-212ENST00000596163 IQCA1Q86XH1 822 aa20.38■□□□□ 0.85
SHKBP1-212ENST00000596163 LRRC47Q8N1G4 583 aaKnown RBP20.38■□□□□ 0.85
SHKBP1-212ENST00000596163 RAET1EQ8TD07 263 aa20.38■□□□□ 0.85
SHKBP1-212ENST00000596163 MAP4K1Q92918 833 aa20.38■□□□□ 0.85
SHKBP1-212ENST00000596163 TXNRD2Q9NNW7 524 aa20.38■□□□□ 0.85
SHKBP1-212ENST00000596163 CCDC85CA6NKD9 419 aa20.37■□□□□ 0.85
SHKBP1-212ENST00000596163 NOVP48745 357 aa20.37■□□□□ 0.85
SHKBP1-212ENST00000596163 NMT2O60551 498 aa20.36■□□□□ 0.85
SHKBP1-212ENST00000596163 TOP1P11387 765 aaKnown RBP20.36■□□□□ 0.85
SHKBP1-212ENST00000596163 Q3C1V9 767 aa20.36■□□□□ 0.85
SHKBP1-212ENST00000596163 SAMD1Q6SPF0 538 aaPredicted RBP20.36■□□□□ 0.85
SHKBP1-212ENST00000596163 GMCL1Q96IK5 515 aa20.36■□□□□ 0.85
SHKBP1-212ENST00000596163 SLF1Q9BQI6 1058 aa20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms