RNA–Protein interactions for RNA: ENST00000568373.5

SMPD3-211, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,073 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-211ENST00000568373 ARHGAP30Q7Z6I6 1101 aaPredicted RBP20.8■□□□□ 0.92
SMPD3-211ENST00000568373 STAG2Q8N3U4 1231 aa20.8■□□□□ 0.92
SMPD3-211ENST00000568373 ZNF830Q96NB3 372 aaPredicted RBP20.8■□□□□ 0.92
SMPD3-211ENST00000568373 TMEM47Q9BQJ4 181 aa20.8■□□□□ 0.92
SMPD3-211ENST00000568373 BPIFA3Q9BQP9 254 aa20.8■□□□□ 0.92
SMPD3-211ENST00000568373 TTC12Q9H892 705 aaPredicted RBP20.8■□□□□ 0.92
SMPD3-211ENST00000568373 FAM13BQ9NYF5 915 aa20.8■□□□□ 0.92
SMPD3-211ENST00000568373 MAD2L2Q9UI95 211 aa20.8■□□□□ 0.92
SMPD3-211ENST00000568373 NLRP12P59046 1061 aa20.79■□□□□ 0.92
SMPD3-211ENST00000568373 DOK7Q18PE1 504 aa20.79■□□□□ 0.92
SMPD3-211ENST00000568373 NEDD1Q8NHV4 660 aa20.79■□□□□ 0.92
SMPD3-211ENST00000568373 TUBE1Q9UJT0 475 aa20.79■□□□□ 0.92
SMPD3-211ENST00000568373 NLRP5P59047 1200 aa20.79■□□□□ 0.92
SMPD3-211ENST00000568373 SF3B2Q13435 895 aaKnown RBP20.79■□□□□ 0.92
SMPD3-211ENST00000568373 LONRF3Q496Y0 759 aa20.79■□□□□ 0.92
SMPD3-211ENST00000568373 SPECC1Q5M775 1068 aa20.79■□□□□ 0.92
SMPD3-211ENST00000568373 KRBA2Q6ZNG9 492 aa20.79■□□□□ 0.92
SMPD3-211ENST00000568373 ILDR2Q71H61 639 aa20.79■□□□□ 0.92
SMPD3-211ENST00000568373 PIBF1Q8WXW3 757 aa20.79■□□□□ 0.92
SMPD3-211ENST00000568373 ZNF622Q969S3 477 aaKnown RBP eCLIP20.79■□□□□ 0.92
SMPD3-211ENST00000568373 TTF2Q9UNY4 1162 aaKnown RBP20.79■□□□□ 0.92
SMPD3-211ENST00000568373 F8W031 263 aaPredicted RBP20.78■□□□□ 0.92
SMPD3-211ENST00000568373 BIN1O00499 593 aa20.78■□□□□ 0.92
SMPD3-211ENST00000568373 BMP15O95972 392 aa20.78■□□□□ 0.92
SMPD3-211ENST00000568373 VEGFAP15692 232 aaPredicted RBP20.78■□□□□ 0.92
SMPD3-211ENST00000568373 KIAA2012Q0VF49 1180 aa20.78■□□□□ 0.92
SMPD3-211ENST00000568373 ELOA2Q8IYF1 753 aaPredicted RBP20.78■□□□□ 0.92
SMPD3-211ENST00000568373 AOPEPQ8N6M6 819 aa20.78■□□□□ 0.92
SMPD3-211ENST00000568373 CNNM3Q8NE01 707 aa20.78■□□□□ 0.92
SMPD3-211ENST00000568373 SH3GLB2Q9NR46 395 aa20.77■□□□□ 0.92
SMPD3-211ENST00000568373 CALML3P27482 149 aa20.77■□□□□ 0.92
SMPD3-211ENST00000568373 METTL16Q86W50 562 aaKnown RBP20.77■□□□□ 0.92
SMPD3-211ENST00000568373 C2CD5Q86YS7 1000 aa20.77■□□□□ 0.92
SMPD3-211ENST00000568373 PALM3A6NDB9 673 aaPredicted RBP20.76■□□□□ 0.91
SMPD3-211ENST00000568373 G3V3G9 751 aa20.76■□□□□ 0.91
SMPD3-211ENST00000568373 CDC25BP30305 580 aa20.76■□□□□ 0.91
SMPD3-211ENST00000568373 PNOCQ13519 176 aa20.76■□□□□ 0.91
SMPD3-211ENST00000568373 NOM1Q5C9Z4 860 aaKnown RBP20.76■□□□□ 0.91
SMPD3-211ENST00000568373 DCAF8Q5TAQ9 597 aa20.76■□□□□ 0.91
SMPD3-211ENST00000568373 MXD3Q9BW11 206 aa20.76■□□□□ 0.91
SMPD3-211ENST00000568373 ANO8Q9HCE9 1232 aaPredicted RBP20.76■□□□□ 0.91
SMPD3-211ENST00000568373 OFD1O75665 1012 aa20.76■□□□□ 0.91
SMPD3-211ENST00000568373 TRAPPC10P48553 1259 aa20.76■□□□□ 0.91
SMPD3-211ENST00000568373 STYK1Q6J9G0 422 aa20.76■□□□□ 0.91
SMPD3-211ENST00000568373 LZTS2Q9BRK4 669 aa20.76■□□□□ 0.91
SMPD3-211ENST00000568373 CSRNP2Q9H175 543 aa20.76■□□□□ 0.91
SMPD3-211ENST00000568373 H0YIN7 160 aa20.75■□□□□ 0.91
SMPD3-211ENST00000568373 WNT7AO00755 349 aa20.75■□□□□ 0.91
SMPD3-211ENST00000568373 BAG6P46379 1132 aa20.75■□□□□ 0.91
SMPD3-211ENST00000568373 PICALMQ13492 652 aa20.75■□□□□ 0.91
SMPD3-211ENST00000568373 SLC35G1Q2M3R5 365 aa20.75■□□□□ 0.91
SMPD3-211ENST00000568373 TTC38Q5R3I4 469 aa20.75■□□□□ 0.91
SMPD3-211ENST00000568373 DRC7Q8IY82 874 aa20.75■□□□□ 0.91
SMPD3-211ENST00000568373 HOOK1Q9UJC3 728 aaKnown RBP20.75■□□□□ 0.91
SMPD3-211ENST00000568373 POLR2DO15514 142 aaKnown RBP20.74■□□□□ 0.91
SMPD3-211ENST00000568373 CYTH3O43739 400 aa20.74■□□□□ 0.91
SMPD3-211ENST00000568373 NOVP48745 357 aa20.74■□□□□ 0.91
SMPD3-211ENST00000568373 PODNQ7Z5L7 613 aa20.74■□□□□ 0.91
SMPD3-211ENST00000568373 GPKOWQ92917 476 aaPredicted RBP eCLIP20.74■□□□□ 0.91
SMPD3-211ENST00000568373 FERMT2Q96AC1 680 aa20.74■□□□□ 0.91
SMPD3-211ENST00000568373 CEP95Q96GE4 821 aa20.74■□□□□ 0.91
SMPD3-211ENST00000568373 MRFAP1L1Q96HT8 127 aa20.74■□□□□ 0.91
SMPD3-211ENST00000568373 KCNF1Q9H3M0 494 aa20.74■□□□□ 0.91
SMPD3-211ENST00000568373 TOP1P11387 765 aaKnown RBP20.74■□□□□ 0.91
SMPD3-211ENST00000568373 MDM2Q00987 491 aaPredicted RBP20.74■□□□□ 0.91
SMPD3-211ENST00000568373 GABPAQ06546 454 aa20.74■□□□□ 0.91
SMPD3-211ENST00000568373 HHIPL2Q6UWX4 724 aa20.74■□□□□ 0.91
SMPD3-211ENST00000568373 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.74■□□□□ 0.91
SMPD3-211ENST00000568373 PIK3AP1Q6ZUJ8 805 aa20.74■□□□□ 0.91
SMPD3-211ENST00000568373 DDX4Q9NQI0 724 aaKnown RBP20.74■□□□□ 0.91
SMPD3-211ENST00000568373 MTMR7Q9Y216 660 aa20.74■□□□□ 0.91
SMPD3-211ENST00000568373 PLIN4Q96Q06 1357 aa20.73■□□□□ 0.91
SMPD3-211ENST00000568373 SCNN1DP51172 638 aa20.73■□□□□ 0.91
SMPD3-211ENST00000568373 ZNF174Q15697 407 aa20.73■□□□□ 0.91
SMPD3-211ENST00000568373 BLIDQ8IZY5 108 aa20.73■□□□□ 0.91
SMPD3-211ENST00000568373 UPF1Q92900 1129 aaKnown RBP eCLIP20.73■□□□□ 0.91
SMPD3-211ENST00000568373 TEKT1Q969V4 418 aa20.73■□□□□ 0.91
SMPD3-211ENST00000568373 USP40Q9NVE5 1235 aa20.73■□□□□ 0.91
SMPD3-211ENST00000568373 CLIP2Q9UDT6 1046 aa20.73■□□□□ 0.91
SMPD3-211ENST00000568373 PCDHA4Q9UN74 947 aa20.73■□□□□ 0.91
SMPD3-211ENST00000568373 SRCAPQ6ZRS2 3230 aa20.73■□□□□ 0.91
SMPD3-211ENST00000568373 PTGS1P23219 599 aa20.73■□□□□ 0.91
SMPD3-211ENST00000568373 USP49Q70CQ1 688 aa20.73■□□□□ 0.91
SMPD3-211ENST00000568373 FOXP4Q8IVH2 680 aaPredicted RBP20.73■□□□□ 0.91
SMPD3-211ENST00000568373 SPZ1Q9BXG8 430 aa20.73■□□□□ 0.91
SMPD3-211ENST00000568373 DBNDD1Q9H9R9 158 aa20.73■□□□□ 0.91
SMPD3-211ENST00000568373 ADAMTSL1Q8N6G6 1762 aa20.72■□□□□ 0.91
SMPD3-211ENST00000568373 SLX4Q8IY92 1834 aa20.72■□□□□ 0.91
SMPD3-211ENST00000568373 KLRF2D3W0D1 207 aa20.72■□□□□ 0.91
SMPD3-211ENST00000568373 ADAMTS3O15072 1205 aa20.72■□□□□ 0.91
SMPD3-211ENST00000568373 ATP2C1P98194 919 aaPredicted RBP20.72■□□□□ 0.91
SMPD3-211ENST00000568373 ISM2Q6H9L7 571 aa20.72■□□□□ 0.91
SMPD3-211ENST00000568373 PCDHA5Q9Y5H7 936 aa20.72■□□□□ 0.91
SMPD3-211ENST00000568373 PARP1P09874 1014 aaKnown RBP20.71■□□□□ 0.91
SMPD3-211ENST00000568373 GOLGA8HP0CJ92 632 aa20.71■□□□□ 0.91
SMPD3-211ENST00000568373 PTGDRQ13258 359 aa20.71■□□□□ 0.91
SMPD3-211ENST00000568373 POSTNQ15063 836 aa20.71■□□□□ 0.91
SMPD3-211ENST00000568373 WWC2Q6AWC2 1192 aa20.71■□□□□ 0.91
SMPD3-211ENST00000568373 TYW1BQ6NUM6 668 aa20.71■□□□□ 0.91
SMPD3-211ENST00000568373 CDC42EP5Q6NZY7 148 aa20.71■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms