RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 ALPK3Q96L96 1907 aa20.65■□□□□ 0.9
CLN3-216ENST00000565316 IGHA2P01877 340 aa20.64■□□□□ 0.89
CLN3-216ENST00000565316 CHGBP05060 677 aa20.64■□□□□ 0.89
CLN3-216ENST00000565316 CCND3P30281 292 aaPredicted RBP20.64■□□□□ 0.89
CLN3-216ENST00000565316 KIAA1755Q5JYT7 1200 aa20.64■□□□□ 0.89
CLN3-216ENST00000565316 COL6A1P12109 1028 aa20.63■□□□□ 0.89
CLN3-216ENST00000565316 AKR1B1P15121 316 aa20.63■□□□□ 0.89
CLN3-216ENST00000565316 LPAR1Q92633 364 aa20.63■□□□□ 0.89
CLN3-216ENST00000565316 CCDC17Q96LX7 622 aa20.63■□□□□ 0.89
CLN3-216ENST00000565316 FLRT1Q9NZU1 646 aa20.63■□□□□ 0.89
CLN3-216ENST00000565316 TMX2Q9Y320 296 aa20.63■□□□□ 0.89
CLN3-216ENST00000565316 CYP2D7A0A087X1C5 515 aa20.62■□□□□ 0.89
CLN3-216ENST00000565316 USP17L12C9JPN9 530 aa20.62■□□□□ 0.89
CLN3-216ENST00000565316 USP17L21D6R901 530 aa20.62■□□□□ 0.89
CLN3-216ENST00000565316 SMIM22K7EJ46 135 aa20.62■□□□□ 0.89
CLN3-216ENST00000565316 SMARCA5O60264 1052 aaPredicted RBP20.62■□□□□ 0.89
CLN3-216ENST00000565316 CDK8P49336 464 aa20.62■□□□□ 0.89
CLN3-216ENST00000565316 WDR78Q5VTH9 848 aa20.62■□□□□ 0.89
CLN3-216ENST00000565316 MFSD14CQ5VZR4 134 aa20.62■□□□□ 0.89
CLN3-216ENST00000565316 ZSCAN25Q6NSZ9 544 aa20.62■□□□□ 0.89
CLN3-216ENST00000565316 C16orf86Q6ZW13 317 aa20.62■□□□□ 0.89
CLN3-216ENST00000565316 C7orf61Q8IZ16 206 aa20.62■□□□□ 0.89
CLN3-216ENST00000565316 MOV10L1Q9BXT6 1211 aaKnown RBP20.62■□□□□ 0.89
CLN3-216ENST00000565316 STAP2Q9UGK3 403 aa20.62■□□□□ 0.89
CLN3-216ENST00000565316 IVNS1ABPQ9Y6Y0 642 aa20.62■□□□□ 0.89
CLN3-216ENST00000565316 PFASO15067 1338 aa20.62■□□□□ 0.89
CLN3-216ENST00000565316 BMP8BP34820 402 aa20.61■□□□□ 0.89
CLN3-216ENST00000565316 ICA1Q05084 483 aa20.61■□□□□ 0.89
CLN3-216ENST00000565316 MB21D1Q8N884 522 aa20.61■□□□□ 0.89
CLN3-216ENST00000565316 SHCBP1Q8NEM2 672 aa20.61■□□□□ 0.89
CLN3-216ENST00000565316 GDF15Q99988 308 aa20.61■□□□□ 0.89
CLN3-216ENST00000565316 TANGO6Q9C0B7 1094 aa20.61■□□□□ 0.89
CLN3-216ENST00000565316 PUS7LQ9H0K6 701 aaKnown RBP20.61■□□□□ 0.89
CLN3-216ENST00000565316 SH2D4AQ9H788 454 aa20.61■□□□□ 0.89
CLN3-216ENST00000565316 ARHGEF10LQ9HCE6 1279 aa20.61■□□□□ 0.89
CLN3-216ENST00000565316 RLFQ13129 1914 aa20.61■□□□□ 0.89
CLN3-216ENST00000565316 STRNO43815 780 aa20.6■□□□□ 0.89
CLN3-216ENST00000565316 DSG3P32926 999 aa20.6■□□□□ 0.89
CLN3-216ENST00000565316 CLEC10AQ8IUN9 316 aa20.6■□□□□ 0.89
CLN3-216ENST00000565316 AMOTL1Q8IY63 956 aa20.6■□□□□ 0.89
CLN3-216ENST00000565316 NPLOC4Q8TAT6 608 aa20.6■□□□□ 0.89
CLN3-216ENST00000565316 SPATC1LQ9H0A9 340 aa20.6■□□□□ 0.89
CLN3-216ENST00000565316 DCTPP1Q9H773 170 aa20.6■□□□□ 0.89
CLN3-216ENST00000565316 VCPKMTQ9H867 229 aa20.6■□□□□ 0.89
CLN3-216ENST00000565316 ECHDC1Q9NTX5 307 aa20.6■□□□□ 0.89
CLN3-216ENST00000565316 SLC4A4Q9Y6R1 1079 aa20.6■□□□□ 0.89
CLN3-216ENST00000565316 ATP2B2Q01814 1243 aa20.59■□□□□ 0.89
CLN3-216ENST00000565316 CTR9Q6PD62 1173 aa20.59■□□□□ 0.89
CLN3-216ENST00000565316 DDRGK1Q96HY6 314 aa20.59■□□□□ 0.89
CLN3-216ENST00000565316 A0A0G2JMZ2 1700 aa20.59■□□□□ 0.89
CLN3-216ENST00000565316 LAMA3Q16787 3333 aa20.59■□□□□ 0.89
CLN3-216ENST00000565316 STRBPQ96SI9 672 aaKnown RBP20.58■□□□□ 0.89
CLN3-216ENST00000565316 KANSL2Q9H9L4 492 aa20.58■□□□□ 0.89
CLN3-216ENST00000565316 ZMYND8Q9ULU4 1186 aaPredicted RBP20.58■□□□□ 0.89
CLN3-216ENST00000565316 BAZ2AQ9UIF9 1905 aaKnown RBP20.58■□□□□ 0.89
CLN3-216ENST00000565316 WDR46O15213 610 aaKnown RBP20.57■□□□□ 0.88
CLN3-216ENST00000565316 FLOT1O75955 427 aa20.57■□□□□ 0.88
CLN3-216ENST00000565316 ERCC3P19447 782 aa20.57■□□□□ 0.88
CLN3-216ENST00000565316 ADORA2AP29274 412 aa20.57■□□□□ 0.88
CLN3-216ENST00000565316 OLFML2BQ68BL8 750 aa20.57■□□□□ 0.88
CLN3-216ENST00000565316 SPICE1Q8N0Z3 855 aa20.57■□□□□ 0.88
CLN3-216ENST00000565316 TRPV1Q8NER1 839 aa20.57■□□□□ 0.88
CLN3-216ENST00000565316 DDX20Q9UHI6 824 aaKnown RBP20.57■□□□□ 0.88
CLN3-216ENST00000565316 ADAMTS5Q9UNA0 930 aa20.57■□□□□ 0.88
CLN3-216ENST00000565316 ZNF236Q9UL36 1845 aa20.57■□□□□ 0.88
CLN3-216ENST00000565316 MYH7P12883 1935 aa20.57■□□□□ 0.88
CLN3-216ENST00000565316 MSCO60682 206 aa20.56■□□□□ 0.88
CLN3-216ENST00000565316 EEF2P13639 858 aaKnown RBP20.56■□□□□ 0.88
CLN3-216ENST00000565316 CYP2C19P33261 490 aa20.56■□□□□ 0.88
CLN3-216ENST00000565316 SBK1Q52WX2 424 aa20.56■□□□□ 0.88
CLN3-216ENST00000565316 GIMAP6Q6P9H5 292 aa20.56■□□□□ 0.88
CLN3-216ENST00000565316 DPP9Q86TI2 863 aa20.56■□□□□ 0.88
CLN3-216ENST00000565316 ABRAQ8N0Z2 381 aa20.56■□□□□ 0.88
CLN3-216ENST00000565316 KBTBD3Q8NAB2 608 aa20.56■□□□□ 0.88
CLN3-216ENST00000565316 ATG4CQ96DT6 458 aa20.56■□□□□ 0.88
CLN3-216ENST00000565316 MROH8Q9H579 483 aa20.56■□□□□ 0.88
CLN3-216ENST00000565316 CYBAP13498 195 aa20.55■□□□□ 0.88
CLN3-216ENST00000565316 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.55■□□□□ 0.88
CLN3-216ENST00000565316 ARPP21Q9UBL0 812 aaPredicted RBP20.55■□□□□ 0.88
CLN3-216ENST00000565316 DNAH12Q6ZR08 3092 aa20.55■□□□□ 0.88
CLN3-216ENST00000565316 MYH8P13535 1937 aa20.55■□□□□ 0.88
CLN3-216ENST00000565316 GSG1L2A8MUP6 293 aa20.54■□□□□ 0.88
CLN3-216ENST00000565316 SOX1O00570 391 aaPredicted RBP20.54■□□□□ 0.88
CLN3-216ENST00000565316 COBLO75128 1261 aa20.54■□□□□ 0.88
CLN3-216ENST00000565316 LRRC26Q2I0M4 334 aa20.54■□□□□ 0.88
CLN3-216ENST00000565316 OSBP2Q969R2 916 aa20.54■□□□□ 0.88
CLN3-216ENST00000565316 GPATCH3Q96I76 525 aa20.54■□□□□ 0.88
CLN3-216ENST00000565316 RNF113AO15541 343 aaKnown RBP20.53■□□□□ 0.88
CLN3-216ENST00000565316 SYN1P17600 705 aa20.53■□□□□ 0.88
CLN3-216ENST00000565316 MAGEA10P43363 369 aaPredicted RBP20.53■□□□□ 0.88
CLN3-216ENST00000565316 TMEM132BQ14DG7 1078 aa20.53■□□□□ 0.88
CLN3-216ENST00000565316 APPBP2Q92624 585 aa20.53■□□□□ 0.88
CLN3-216ENST00000565316 SLC25A27O95847 323 aa20.53■□□□□ 0.88
CLN3-216ENST00000565316 CNGA1P29973 690 aa20.53■□□□□ 0.88
CLN3-216ENST00000565316 PLS1Q14651 629 aa20.53■□□□□ 0.88
CLN3-216ENST00000565316 GOPCQ9HD26 462 aa20.53■□□□□ 0.88
CLN3-216ENST00000565316 SLC5A4Q9NY91 659 aa20.53■□□□□ 0.88
CLN3-216ENST00000565316 ROBO3Q96MS0 1386 aa20.52■□□□□ 0.88
CLN3-216ENST00000565316 FRMPD3Q5JV73 1810 aa20.52■□□□□ 0.88
CLN3-216ENST00000565316 DNM1LO00429 736 aa20.52■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms