RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858	MROH2B	Q7Z745	1585 aa		3.94	□□□□□ -1.78
SPG11-223	ENST00000560858	GRK4	P32298	578 aa		3.94	□□□□□ -1.78
SPG11-223	ENST00000560858	WIPI1	Q5MNZ9	446 aa	Predicted RBP	3.94	□□□□□ -1.78
SPG11-223	ENST00000560858	PCNX4	Q63HM2	1172 aa		3.94	□□□□□ -1.78
SPG11-223	ENST00000560858	SYT8	Q8NBV8	401 aa		3.94	□□□□□ -1.78
SPG11-223	ENST00000560858	SHISA4	Q96DD7	197 aa		3.94	□□□□□ -1.78
SPG11-223	ENST00000560858		Q96M66	194 aa		3.94	□□□□□ -1.78
SPG11-223	ENST00000560858	BDH2	Q9BUT1	245 aa		3.94	□□□□□ -1.78
SPG11-223	ENST00000560858	ADAM7	Q9H2U9	754 aa		3.94	□□□□□ -1.78
SPG11-223	ENST00000560858	CEP131	Q9UPN4	1083 aa		3.94	□□□□□ -1.78
SPG11-223	ENST00000560858	PCDHA11	Q9Y5I1	949 aa		3.94	□□□□□ -1.78
SPG11-223	ENST00000560858	ABLIM1	O14639	778 aa		3.93	□□□□□ -1.78
SPG11-223	ENST00000560858	CILP	O75339	1184 aa		3.93	□□□□□ -1.78
SPG11-223	ENST00000560858	FBXO24	O75426	580 aa		3.93	□□□□□ -1.78
SPG11-223	ENST00000560858	SERPINB4	P48594	390 aa		3.93	□□□□□ -1.78
SPG11-223	ENST00000560858	PTPN11	Q06124	597 aa	Predicted RBP	3.93	□□□□□ -1.78
SPG11-223	ENST00000560858	SLC6A19	Q695T7	634 aa		3.93	□□□□□ -1.78
SPG11-223	ENST00000560858	SIRT2	Q8IXJ6	389 aa		3.93	□□□□□ -1.78
SPG11-223	ENST00000560858	MRPL41	Q8IXM3	137 aa	Known RBP	3.93	□□□□□ -1.78
SPG11-223	ENST00000560858	LINC01356	Q8N9X3	169 aa		3.93	□□□□□ -1.78
SPG11-223	ENST00000560858	RBCK1	Q9BYM8	510 aa		3.93	□□□□□ -1.78
SPG11-223	ENST00000560858	CNOT11	Q9UKZ1	510 aa	Known RBP	3.93	□□□□□ -1.78
SPG11-223	ENST00000560858	TACC3	Q9Y6A5	838 aa		3.93	□□□□□ -1.78
SPG11-223	ENST00000560858	SMARCA4	P51532	1647 aa		3.92	□□□□□ -1.78
SPG11-223	ENST00000560858	TOP2A	P11388	1531 aa	Known RBP	3.92	□□□□□ -1.78
SPG11-223	ENST00000560858	LMNB1	P20700	586 aa		3.92	□□□□□ -1.78
SPG11-223	ENST00000560858	VIPR1	P32241	457 aa		3.92	□□□□□ -1.78
SPG11-223	ENST00000560858	GALK1	P51570	392 aa		3.92	□□□□□ -1.78
SPG11-223	ENST00000560858	EPHB3	P54753	998 aa		3.92	□□□□□ -1.78
SPG11-223	ENST00000560858	SLC14A2	Q15849	920 aa		3.92	□□□□□ -1.78
SPG11-223	ENST00000560858	RASIP1	Q5U651	963 aa		3.92	□□□□□ -1.78
SPG11-223	ENST00000560858	HHIPL2	Q6UWX4	724 aa		3.92	□□□□□ -1.78
SPG11-223	ENST00000560858	MZB1	Q8WU39	189 aa		3.92	□□□□□ -1.78
SPG11-223	ENST00000560858	LINC01599	Q8WXQ3	324 aa		3.92	□□□□□ -1.78
SPG11-223	ENST00000560858	CRELD1	Q96HD1	420 aa		3.92	□□□□□ -1.78
SPG11-223	ENST00000560858	CNTD2	Q9H8S5	307 aa		3.92	□□□□□ -1.78
SPG11-223	ENST00000560858	CRTAC1	Q9NQ79	661 aa		3.92	□□□□□ -1.78
SPG11-223	ENST00000560858	CECR2	Q9BXF3	1484 aa		3.92	□□□□□ -1.78
SPG11-223	ENST00000560858		K7ESM1	405 aa		3.91	□□□□□ -1.78
SPG11-223	ENST00000560858	IRS4	O14654	1257 aa	Predicted RBP	3.91	□□□□□ -1.78
SPG11-223	ENST00000560858	GIPC1	O14908	333 aa		3.91	□□□□□ -1.78
SPG11-223	ENST00000560858	AKAP8	O43823	692 aa	Known RBP	3.91	□□□□□ -1.78
SPG11-223	ENST00000560858	PGR	P06401	933 aa		3.91	□□□□□ -1.78
SPG11-223	ENST00000560858	ZXDA	P98168	799 aa		3.91	□□□□□ -1.78
SPG11-223	ENST00000560858	PLCB3	Q01970	1234 aa		3.91	□□□□□ -1.78
SPG11-223	ENST00000560858	PDE4B	Q07343	736 aa		3.91	□□□□□ -1.78
SPG11-223	ENST00000560858	ZNF827	Q17R98	1081 aa		3.91	□□□□□ -1.78
SPG11-223	ENST00000560858	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	3.91	□□□□□ -1.78
SPG11-223	ENST00000560858	NLRX1	Q86UT6	975 aa		3.91	□□□□□ -1.78
SPG11-223	ENST00000560858	FAM129C	Q86XR2	697 aa		3.91	□□□□□ -1.78
SPG11-223	ENST00000560858	DTWD2	Q8NBA8	298 aa		3.91	□□□□□ -1.78
SPG11-223	ENST00000560858	ANKRD24	Q8TF21	1146 aa		3.91	□□□□□ -1.78
SPG11-223	ENST00000560858	TMEM87B	Q96K49	555 aa		3.91	□□□□□ -1.78
SPG11-223	ENST00000560858	PWWP2A	Q96N64	755 aa		3.91	□□□□□ -1.78
SPG11-223	ENST00000560858	DPH2	Q9BQC3	489 aa	Predicted RBP	3.91	□□□□□ -1.78
SPG11-223	ENST00000560858	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	3.91	□□□□□ -1.78
SPG11-223	ENST00000560858	TJP2	Q9UDY2	1190 aa		3.91	□□□□□ -1.78
SPG11-223	ENST00000560858	PNMA6F	A0A0J9YX94	578 aa		3.9	□□□□□ -1.79
SPG11-223	ENST00000560858	CARNS1	A5YM72	827 aa		3.9	□□□□□ -1.79
SPG11-223	ENST00000560858	KCNC1	P48547	511 aa		3.9	□□□□□ -1.79
SPG11-223	ENST00000560858	YBX1	P67809	324 aa	Known RBP	3.9	□□□□□ -1.79
SPG11-223	ENST00000560858	RTP5	Q14D33	572 aa		3.9	□□□□□ -1.79
SPG11-223	ENST00000560858	CLEC16A	Q2KHT3	1053 aa		3.9	□□□□□ -1.79
SPG11-223	ENST00000560858	UBXN11	Q5T124	520 aa		3.9	□□□□□ -1.79
SPG11-223	ENST00000560858	MCAT	Q8IVS2	390 aa	Known RBP	3.9	□□□□□ -1.79
SPG11-223	ENST00000560858	DNAJB8	Q8NHS0	232 aa		3.9	□□□□□ -1.79
SPG11-223	ENST00000560858	PCGF6	Q9BYE7	350 aa		3.9	□□□□□ -1.79
SPG11-223	ENST00000560858	SRRD	Q9UH36	339 aa		3.9	□□□□□ -1.79
SPG11-223	ENST00000560858	EBF1	Q9UH73	591 aa		3.9	□□□□□ -1.79
SPG11-223	ENST00000560858	ZMYM5	Q9UJ78	669 aa		3.9	□□□□□ -1.79
SPG11-223	ENST00000560858	SMARCA2	P51531	1590 aa		3.89	□□□□□ -1.79
SPG11-223	ENST00000560858	RBAK-RBAKDN	I3L0D1	243 aa		3.89	□□□□□ -1.79
SPG11-223	ENST00000560858	GFRA2	O00451	464 aa		3.89	□□□□□ -1.79
SPG11-223	ENST00000560858	MPO	P05164	745 aa		3.89	□□□□□ -1.79
SPG11-223	ENST00000560858	CELA3A	P09093	270 aa		3.89	□□□□□ -1.79
SPG11-223	ENST00000560858	RPL10	P27635	214 aa	Known RBP	3.89	□□□□□ -1.79
SPG11-223	ENST00000560858	TEK	Q02763	1124 aa		3.89	□□□□□ -1.79
SPG11-223	ENST00000560858	TMEM62	Q0P6H9	643 aa		3.89	□□□□□ -1.79
SPG11-223	ENST00000560858	ZFYVE27	Q5T4F4	411 aa		3.89	□□□□□ -1.79
SPG11-223	ENST00000560858	SV2B	Q7L1I2	683 aa		3.89	□□□□□ -1.79
SPG11-223	ENST00000560858	TMEFF1	Q8IYR6	380 aa		3.89	□□□□□ -1.79
SPG11-223	ENST00000560858	NLGN1	Q8N2Q7	840 aa		3.89	□□□□□ -1.79
SPG11-223	ENST00000560858	PEG3	Q9GZU2	1588 aa		3.89	□□□□□ -1.79
SPG11-223	ENST00000560858	NOTO	A8MTQ0	251 aa		3.88	□□□□□ -1.79
SPG11-223	ENST00000560858	NRDC	O43847	1150 aa		3.88	□□□□□ -1.79
SPG11-223	ENST00000560858	PRICKLE3	O43900	615 aa	Predicted RBP	3.88	□□□□□ -1.79
SPG11-223	ENST00000560858	GRIN3B	O60391	1043 aa		3.88	□□□□□ -1.79
SPG11-223	ENST00000560858	PNLIP	P16233	465 aa		3.88	□□□□□ -1.79
SPG11-223	ENST00000560858	ARL4A	P40617	200 aa		3.88	□□□□□ -1.79
SPG11-223	ENST00000560858	KIR2DL1	P43626	348 aa	Predicted RBP	3.88	□□□□□ -1.79
SPG11-223	ENST00000560858	KIR2DL2	P43627	348 aa	Predicted RBP	3.88	□□□□□ -1.79
SPG11-223	ENST00000560858	CDK8	P49336	464 aa		3.88	□□□□□ -1.79
SPG11-223	ENST00000560858	KRTAP1-1	Q07627	177 aa		3.88	□□□□□ -1.79
SPG11-223	ENST00000560858	TRIM26	Q12899	539 aa	Predicted RBP	3.88	□□□□□ -1.79
SPG11-223	ENST00000560858	ENOX2	Q16206	610 aa	Known RBP	3.88	□□□□□ -1.79
SPG11-223	ENST00000560858	DIEXF	Q68CQ4	756 aa	Known RBP	3.88	□□□□□ -1.79
SPG11-223	ENST00000560858	CEP128	Q6ZU80	1094 aa		3.88	□□□□□ -1.79
SPG11-223	ENST00000560858	TMC7	Q7Z402	723 aa		3.88	□□□□□ -1.79
SPG11-223	ENST00000560858	LDHD	Q86WU2	507 aa		3.88	□□□□□ -1.79
SPG11-223	ENST00000560858	GAL3ST3	Q96A11	431 aa		3.88	□□□□□ -1.79

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