RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 MAP2K1Q02750 393 aaPredicted RBP25.53■■□□□ 1.68
SNX1-206ENST00000559389 COL9A3Q14050 684 aaPredicted RBP25.53■■□□□ 1.68
SNX1-206ENST00000559389 RCSD1Q6JBY9 416 aa25.53■■□□□ 1.68
SNX1-206ENST00000559389 ZSCAN10Q96SZ4 725 aaPredicted RBP25.53■■□□□ 1.68
SNX1-206ENST00000559389 UBAC1Q9BSL1 405 aa25.53■■□□□ 1.68
SNX1-206ENST00000559389 VCAM1P19320 739 aa25.52■■□□□ 1.68
SNX1-206ENST00000559389 CCDC178Q5BJE1 867 aa25.52■■□□□ 1.68
SNX1-206ENST00000559389 KIAA1755Q5JYT7 1200 aa25.52■■□□□ 1.68
SNX1-206ENST00000559389 TREML2Q5T2D2 321 aa25.52■■□□□ 1.68
SNX1-206ENST00000559389 LPAR1Q92633 364 aa25.52■■□□□ 1.68
SNX1-206ENST00000559389 TTC14Q96N46 770 aa25.52■■□□□ 1.68
SNX1-206ENST00000559389 NEK1Q96PY6 1258 aa25.52■■□□□ 1.68
SNX1-206ENST00000559389 GOPCQ9HD26 462 aa25.52■■□□□ 1.68
SNX1-206ENST00000559389 DGKHQ86XP1 1220 aa25.51■■□□□ 1.67
SNX1-206ENST00000559389 ENAHQ8N8S7 591 aaPredicted RBP25.51■■□□□ 1.67
SNX1-206ENST00000559389 GMCL1P1Q8NEA9 526 aa25.51■■□□□ 1.67
SNX1-206ENST00000559389 SLC45A1Q9Y2W3 748 aa25.51■■□□□ 1.67
SNX1-206ENST00000559389 TOP1P11387 765 aaKnown RBP25.5■■□□□ 1.67
SNX1-206ENST00000559389 SEC23AQ15436 765 aa25.5■■□□□ 1.67
SNX1-206ENST00000559389 OTUD7BQ6GQQ9 843 aa25.5■■□□□ 1.67
SNX1-206ENST00000559389 ANKS1AQ92625 1134 aa25.5■■□□□ 1.67
SNX1-206ENST00000559389 TMEM47Q9BQJ4 181 aa25.5■■□□□ 1.67
SNX1-206ENST00000559389 MTA3Q9BTC8 594 aa25.5■■□□□ 1.67
SNX1-206ENST00000559389 WDR19Q8NEZ3 1342 aa25.49■■□□□ 1.67
SNX1-206ENST00000559389 PDHXO00330 501 aa25.49■■□□□ 1.67
SNX1-206ENST00000559389 PRC1O43663 620 aa25.49■■□□□ 1.67
SNX1-206ENST00000559389 NDUFB10O96000 172 aa25.49■■□□□ 1.67
SNX1-206ENST00000559389 ALDH1A1P00352 501 aa25.49■■□□□ 1.67
SNX1-206ENST00000559389 MCM5P33992 734 aa25.49■■□□□ 1.67
SNX1-206ENST00000559389 CHST3Q7LGC8 479 aa25.49■■□□□ 1.67
SNX1-206ENST00000559389 JAKMIP1Q96N16 626 aaKnown RBP25.49■■□□□ 1.67
SNX1-206ENST00000559389 WBP1LQ9NX94 342 aa25.49■■□□□ 1.67
SNX1-206ENST00000559389 F5H6K3 240 aa25.48■■□□□ 1.67
SNX1-206ENST00000559389 WDR46O15213 610 aaKnown RBP25.48■■□□□ 1.67
SNX1-206ENST00000559389 KLRC3Q07444 240 aa25.48■■□□□ 1.67
SNX1-206ENST00000559389 SPICE1Q8N0Z3 855 aa25.48■■□□□ 1.67
SNX1-206ENST00000559389 SAGE1Q9NXZ1 904 aa25.48■■□□□ 1.67
SNX1-206ENST00000559389 PARP14Q460N5 1801 aa25.48■■□□□ 1.67
SNX1-206ENST00000559389 IFIT3O14879 490 aaKnown RBP25.47■■□□□ 1.67
SNX1-206ENST00000559389 HMGB1P09429 215 aaKnown RBP25.47■■□□□ 1.67
SNX1-206ENST00000559389 HOXA7P31268 230 aaPredicted RBP25.47■■□□□ 1.67
SNX1-206ENST00000559389 ANAPC15P60006 121 aa25.47■■□□□ 1.67
SNX1-206ENST00000559389 PABPC4Q13310 644 aaKnown RBP eCLIP25.47■■□□□ 1.67
SNX1-206ENST00000559389 SART3Q15020 963 aaKnown RBP25.47■■□□□ 1.67
SNX1-206ENST00000559389 IL17RAQ96F46 866 aa25.47■■□□□ 1.67
SNX1-206ENST00000559389 TMEM87BQ96K49 555 aa25.47■■□□□ 1.67
SNX1-206ENST00000559389 CFHR5Q9BXR6 569 aa25.47■■□□□ 1.67
SNX1-206ENST00000559389 RPAP3Q9H6T3 665 aaPredicted RBP25.47■■□□□ 1.67
SNX1-206ENST00000559389 RNF186Q9NXI6 227 aa25.47■■□□□ 1.67
SNX1-206ENST00000559389 TAF1CQ15572 869 aaPredicted RBP25.46■■□□□ 1.67
SNX1-206ENST00000559389 IFIT1BQ5T764 474 aaKnown RBP25.46■■□□□ 1.67
SNX1-206ENST00000559389 DHX32Q7L7V1 743 aaKnown RBP25.46■■□□□ 1.67
SNX1-206ENST00000559389 IGDCC4Q8TDY8 1250 aa25.46■■□□□ 1.67
SNX1-206ENST00000559389 GMCL1Q96IK5 515 aa25.46■■□□□ 1.67
SNX1-206ENST00000559389 PARK7Q99497 189 aaKnown RBP25.46■■□□□ 1.67
SNX1-206ENST00000559389 PNMA3Q9UL41 463 aa25.46■■□□□ 1.67
SNX1-206ENST00000559389 A0A0G2JMZ2 1700 aa25.46■■□□□ 1.67
SNX1-206ENST00000559389 ERICH2A1L162 156 aa25.45■■□□□ 1.66
SNX1-206ENST00000559389 SH2B2O14492 632 aaPredicted RBP25.45■■□□□ 1.66
SNX1-206ENST00000559389 CA12O43570 354 aa25.45■■□□□ 1.66
SNX1-206ENST00000559389 RAD21O60216 631 aa25.45■■□□□ 1.66
SNX1-206ENST00000559389 PSMA5P28066 241 aa25.45■■□□□ 1.66
SNX1-206ENST00000559389 TMEM67Q5HYA8 995 aa25.45■■□□□ 1.66
SNX1-206ENST00000559389 SLFN13Q68D06 897 aa25.45■■□□□ 1.66
SNX1-206ENST00000559389 BLOC1S2Q6QNY1 142 aa25.45■■□□□ 1.66
SNX1-206ENST00000559389 ADGRA2Q96PE1 1338 aa25.44■■□□□ 1.66
SNX1-206ENST00000559389 RLFQ13129 1914 aa25.44■■□□□ 1.66
SNX1-206ENST00000559389 USP17L15C9J2P7 530 aa25.44■■□□□ 1.66
SNX1-206ENST00000559389 USP17L13C9JLJ4 530 aa25.44■■□□□ 1.66
SNX1-206ENST00000559389 USP17L11C9JVI0 530 aa25.44■■□□□ 1.66
SNX1-206ENST00000559389 USP17L18D6R9N7 530 aa25.44■■□□□ 1.66
SNX1-206ENST00000559389 USP17L22D6RA61 530 aa25.44■■□□□ 1.66
SNX1-206ENST00000559389 USP17L17D6RBQ6 530 aa25.44■■□□□ 1.66
SNX1-206ENST00000559389 USP17L19D6RCP7 530 aa25.44■■□□□ 1.66
SNX1-206ENST00000559389 USP17L20D6RJB6 530 aa25.44■■□□□ 1.66
SNX1-206ENST00000559389 EXOSC10Q01780 885 aaKnown RBP25.44■■□□□ 1.66
SNX1-206ENST00000559389 USP17L24Q0WX57 530 aa25.44■■□□□ 1.66
SNX1-206ENST00000559389 CRHR2Q13324 411 aa25.44■■□□□ 1.66
SNX1-206ENST00000559389 WTAPQ15007 396 aa25.44■■□□□ 1.66
SNX1-206ENST00000559389 FAM83BQ5T0W9 1011 aa25.44■■□□□ 1.66
SNX1-206ENST00000559389 BEGAINQ9BUH8 593 aa25.44■■□□□ 1.66
SNX1-206ENST00000559389 BACH2Q9BYV9 841 aa25.44■■□□□ 1.66
SNX1-206ENST00000559389 TM6SF1Q9BZW5 370 aa25.44■■□□□ 1.66
SNX1-206ENST00000559389 ASCC2Q9H1I8 757 aaPredicted RBP25.44■■□□□ 1.66
SNX1-206ENST00000559389 KAT14Q9H8E8 782 aa25.44■■□□□ 1.66
SNX1-206ENST00000559389 LY9Q9HBG7 655 aa25.44■■□□□ 1.66
SNX1-206ENST00000559389 TRPA1O75762 1119 aa25.43■■□□□ 1.66
SNX1-206ENST00000559389 CPA1P15085 419 aa25.43■■□□□ 1.66
SNX1-206ENST00000559389 CASTP20810 708 aaKnown RBP25.43■■□□□ 1.66
SNX1-206ENST00000559389 IRX3P78415 501 aaPredicted RBP25.43■■□□□ 1.66
SNX1-206ENST00000559389 CATSPERGQ6ZRH7 1159 aa25.43■■□□□ 1.66
SNX1-206ENST00000559389 RASGRP2Q7LDG7 609 aa25.43■■□□□ 1.66
SNX1-206ENST00000559389 PNMA1Q8ND90 353 aa25.43■■□□□ 1.66
SNX1-206ENST00000559389 TCEANC2Q96MN5 208 aa25.43■■□□□ 1.66
SNX1-206ENST00000559389 NUP88Q99567 741 aaPredicted RBP25.43■■□□□ 1.66
SNX1-206ENST00000559389 TANGO6Q9C0B7 1094 aa25.43■■□□□ 1.66
SNX1-206ENST00000559389 SENP2Q9HC62 589 aa25.43■■□□□ 1.66
SNX1-206ENST00000559389 GPHNQ9NQX3 736 aaPredicted RBP25.43■■□□□ 1.66
SNX1-206ENST00000559389 CYP2C8P10632 490 aa25.42■■□□□ 1.66
SNX1-206ENST00000559389 PDHBP11177 359 aa25.42■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms