RNA–Protein interactions for RNA: ENST00000556162.5

SNX6-206, Transcript of sorting nexin 6, humanhuman

TSL 2

Gene SNX6, Length 1,855 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX6-206ENST00000556162 C12orf42Q96LP6 360 aa16.65■□□□□ 0.26
SNX6-206ENST00000556162 BEGAINQ9BUH8 593 aa16.65■□□□□ 0.26
SNX6-206ENST00000556162 VCPKMTQ9H867 229 aa16.65■□□□□ 0.26
SNX6-206ENST00000556162 GREB1LQ9C091 1923 aaPredicted RBP16.64■□□□□ 0.25
SNX6-206ENST00000556162 TNKSO95271 1327 aa16.64■□□□□ 0.25
SNX6-206ENST00000556162 HMGB1P09429 215 aaKnown RBP16.64■□□□□ 0.25
SNX6-206ENST00000556162 TOP1P11387 765 aaKnown RBP16.64■□□□□ 0.25
SNX6-206ENST00000556162 ADCK5Q3MIX3 580 aa16.64■□□□□ 0.25
SNX6-206ENST00000556162 GPAT2Q6NUI2 795 aa16.64■□□□□ 0.25
SNX6-206ENST00000556162 CHST3Q7LGC8 479 aa16.64■□□□□ 0.25
SNX6-206ENST00000556162 LRRC47Q8N1G4 583 aaKnown RBP16.64■□□□□ 0.25
SNX6-206ENST00000556162 FAM43AQ8N2R8 423 aa16.64■□□□□ 0.25
SNX6-206ENST00000556162 JMYQ8N9B5 988 aa16.64■□□□□ 0.25
SNX6-206ENST00000556162 LPAR1Q92633 364 aa16.64■□□□□ 0.25
SNX6-206ENST00000556162 AGTPBP1Q9UPW5 1226 aa16.64■□□□□ 0.25
SNX6-206ENST00000556162 F5H6K3 240 aa16.63■□□□□ 0.25
SNX6-206ENST00000556162 PDHXO00330 501 aa16.63■□□□□ 0.25
SNX6-206ENST00000556162 IFIT3O14879 490 aaKnown RBP16.63■□□□□ 0.25
SNX6-206ENST00000556162 PSMA5P28066 241 aa16.63■□□□□ 0.25
SNX6-206ENST00000556162 KLRC3Q07444 240 aa16.63■□□□□ 0.25
SNX6-206ENST00000556162 PABPC4Q13310 644 aaKnown RBP eCLIP16.63■□□□□ 0.25
SNX6-206ENST00000556162 TREML2Q5T2D2 321 aa16.63■□□□□ 0.25
SNX6-206ENST00000556162 RCSD1Q6JBY9 416 aa16.63■□□□□ 0.25
SNX6-206ENST00000556162 ENAHQ8N8S7 591 aaPredicted RBP16.63■□□□□ 0.25
SNX6-206ENST00000556162 JAKMIP1Q96N16 626 aaKnown RBP16.63■□□□□ 0.25
SNX6-206ENST00000556162 TMEM47Q9BQJ4 181 aa16.63■□□□□ 0.25
SNX6-206ENST00000556162 UPF2Q9HAU5 1272 aaKnown RBP16.63■□□□□ 0.25
SNX6-206ENST00000556162 ZCCHC17Q9NP64 241 aaKnown RBP16.63■□□□□ 0.25
SNX6-206ENST00000556162 PRC1O43663 620 aa16.63■□□□□ 0.25
SNX6-206ENST00000556162 DHX32Q7L7V1 743 aaKnown RBP16.63■□□□□ 0.25
SNX6-206ENST00000556162 SPICE1Q8N0Z3 855 aa16.63■□□□□ 0.25
SNX6-206ENST00000556162 ANKS1AQ92625 1134 aa16.63■□□□□ 0.25
SNX6-206ENST00000556162 MTA3Q9BTC8 594 aa16.63■□□□□ 0.25
SNX6-206ENST00000556162 SLC45A1Q9Y2W3 748 aa16.63■□□□□ 0.25
SNX6-206ENST00000556162 VCAM1P19320 739 aa16.62■□□□□ 0.25
SNX6-206ENST00000556162 ANTXR2P58335 489 aa16.62■□□□□ 0.25
SNX6-206ENST00000556162 IFIT1BQ5T764 474 aaKnown RBP16.62■□□□□ 0.25
SNX6-206ENST00000556162 GMCL1P1Q8NEA9 526 aa16.62■□□□□ 0.25
SNX6-206ENST00000556162 KAT14Q9H8E8 782 aa16.62■□□□□ 0.25
SNX6-206ENST00000556162 RNF186Q9NXI6 227 aa16.62■□□□□ 0.25
SNX6-206ENST00000556162 THSD7BQ9C0I4 1608 aa16.61■□□□□ 0.25
SNX6-206ENST00000556162 TRPA1O75762 1119 aa16.61■□□□□ 0.25
SNX6-206ENST00000556162 NDUFB10O96000 172 aa16.61■□□□□ 0.25
SNX6-206ENST00000556162 OSBPP22059 807 aa16.61■□□□□ 0.25
SNX6-206ENST00000556162 HOXA7P31268 230 aaPredicted RBP16.61■□□□□ 0.25
SNX6-206ENST00000556162 ANAPC15P60006 121 aa16.61■□□□□ 0.25
SNX6-206ENST00000556162 WTAPQ15007 396 aa16.61■□□□□ 0.25
SNX6-206ENST00000556162 TMEM67Q5HYA8 995 aa16.61■□□□□ 0.25
SNX6-206ENST00000556162 KIAA1755Q5JYT7 1200 aa16.61■□□□□ 0.25
SNX6-206ENST00000556162 SLFN13Q68D06 897 aa16.61■□□□□ 0.25
SNX6-206ENST00000556162 BLOC1S2Q6QNY1 142 aa16.61■□□□□ 0.25
SNX6-206ENST00000556162 TMEM87BQ96K49 555 aa16.61■□□□□ 0.25
SNX6-206ENST00000556162 WBP1LQ9NX94 342 aa16.61■□□□□ 0.25
SNX6-206ENST00000556162 PNMA3Q9UL41 463 aa16.61■□□□□ 0.25
SNX6-206ENST00000556162 USP17L15C9J2P7 530 aa16.61■□□□□ 0.25
SNX6-206ENST00000556162 USP17L13C9JLJ4 530 aa16.61■□□□□ 0.25
SNX6-206ENST00000556162 USP17L11C9JVI0 530 aa16.61■□□□□ 0.25
SNX6-206ENST00000556162 USP17L18D6R9N7 530 aa16.61■□□□□ 0.25
SNX6-206ENST00000556162 USP17L22D6RA61 530 aa16.61■□□□□ 0.25
SNX6-206ENST00000556162 USP17L17D6RBQ6 530 aa16.61■□□□□ 0.25
SNX6-206ENST00000556162 USP17L19D6RCP7 530 aa16.61■□□□□ 0.25
SNX6-206ENST00000556162 USP17L20D6RJB6 530 aa16.61■□□□□ 0.25
SNX6-206ENST00000556162 WDR46O15213 610 aaKnown RBP16.61■□□□□ 0.25
SNX6-206ENST00000556162 USP17L24Q0WX57 530 aa16.61■□□□□ 0.25
SNX6-206ENST00000556162 SEC23AQ15436 765 aa16.61■□□□□ 0.25
SNX6-206ENST00000556162 TAF1CQ15572 869 aaPredicted RBP16.61■□□□□ 0.25
SNX6-206ENST00000556162 IGDCC4Q8TDY8 1250 aa16.61■□□□□ 0.25
SNX6-206ENST00000556162 BACH2Q9BYV9 841 aa16.61■□□□□ 0.25
SNX6-206ENST00000556162 RPAP3Q9H6T3 665 aaPredicted RBP16.61■□□□□ 0.25
SNX6-206ENST00000556162 WDR19Q8NEZ3 1342 aa16.6■□□□□ 0.25
SNX6-206ENST00000556162 CA12O43570 354 aa16.6■□□□□ 0.25
SNX6-206ENST00000556162 CASTP20810 708 aaKnown RBP16.6■□□□□ 0.25
SNX6-206ENST00000556162 IRX3P78415 501 aaPredicted RBP16.6■□□□□ 0.25
SNX6-206ENST00000556162 EXOSC10Q01780 885 aaKnown RBP16.6■□□□□ 0.25
SNX6-206ENST00000556162 COL9A3Q14050 684 aaPredicted RBP16.6■□□□□ 0.25
SNX6-206ENST00000556162 TMTC2Q8N394 836 aa16.6■□□□□ 0.25
SNX6-206ENST00000556162 PNMA1Q8ND90 353 aa16.6■□□□□ 0.25
SNX6-206ENST00000556162 TM6SF1Q9BZW5 370 aa16.6■□□□□ 0.25
SNX6-206ENST00000556162 ZFYVE28Q9HCC9 887 aa16.6■□□□□ 0.25
SNX6-206ENST00000556162 MTMR7Q9Y216 660 aa16.6■□□□□ 0.25
SNX6-206ENST00000556162 PTPRFP10586 1907 aa16.6■□□□□ 0.25
SNX6-206ENST00000556162 CATSPERGQ6ZRH7 1159 aa16.59■□□□□ 0.25
SNX6-206ENST00000556162 PARK7Q99497 189 aaKnown RBP16.59■□□□□ 0.25
SNX6-206ENST00000556162 C22orf23Q9BZE7 217 aa16.59■□□□□ 0.25
SNX6-206ENST00000556162 TANGO6Q9C0B7 1094 aa16.59■□□□□ 0.25
SNX6-206ENST00000556162 SAGE1Q9NXZ1 904 aa16.59■□□□□ 0.25
SNX6-206ENST00000556162 CYP2C8P10632 490 aa16.59■□□□□ 0.25
SNX6-206ENST00000556162 SLC1A4P43007 532 aa16.59■□□□□ 0.25
SNX6-206ENST00000556162 FGD1P98174 961 aa16.59■□□□□ 0.25
SNX6-206ENST00000556162 FAM83BQ5T0W9 1011 aa16.59■□□□□ 0.25
SNX6-206ENST00000556162 GMCL1Q96IK5 515 aa16.59■□□□□ 0.25
SNX6-206ENST00000556162 LRRC2Q9BYS8 371 aa16.59■□□□□ 0.25
SNX6-206ENST00000556162 ASCC2Q9H1I8 757 aaPredicted RBP16.59■□□□□ 0.25
SNX6-206ENST00000556162 ZSWIM6Q9HCJ5 1215 aa16.59■□□□□ 0.25
SNX6-206ENST00000556162 ISY1Q9ULR0 285 aaKnown RBP16.59■□□□□ 0.25
SNX6-206ENST00000556162 CYP46A1Q9Y6A2 500 aa16.59■□□□□ 0.25
SNX6-206ENST00000556162 MYH4Q9Y623 1939 aa16.58■□□□□ 0.24
SNX6-206ENST00000556162 SH2B2O14492 632 aaPredicted RBP16.58■□□□□ 0.24
SNX6-206ENST00000556162 BMP3P12645 472 aa16.58■□□□□ 0.24
SNX6-206ENST00000556162 CPA1P15085 419 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms