RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 USP17L4A6NCW7 530 aa21.17■□□□□ 0.98
PRPF40B-208ENST00000548436 UFL1O94874 794 aa21.17■□□□□ 0.98
PRPF40B-208ENST00000548436 SERPINC1P01008 464 aa21.17■□□□□ 0.98
PRPF40B-208ENST00000548436 SERPINB2P05120 415 aa21.17■□□□□ 0.98
PRPF40B-208ENST00000548436 KIF5BP33176 963 aa21.17■□□□□ 0.98
PRPF40B-208ENST00000548436 PLCD1P51178 756 aa21.17■□□□□ 0.98
PRPF40B-208ENST00000548436 KANK3Q6NY19 840 aa21.17■□□□□ 0.98
PRPF40B-208ENST00000548436 USP17L1Q7RTZ2 530 aa21.17■□□□□ 0.98
PRPF40B-208ENST00000548436 STAG2Q8N3U4 1231 aa21.17■□□□□ 0.98
PRPF40B-208ENST00000548436 CCDC150Q8NCX0 1101 aa21.17■□□□□ 0.98
PRPF40B-208ENST00000548436 PNMA1Q8ND90 353 aa21.17■□□□□ 0.98
PRPF40B-208ENST00000548436 SPATA20Q8TB22 786 aa21.17■□□□□ 0.98
PRPF40B-208ENST00000548436 ANKS1AQ92625 1134 aa21.17■□□□□ 0.98
PRPF40B-208ENST00000548436 SYMPKQ92797 1274 aaKnown RBP21.17■□□□□ 0.98
PRPF40B-208ENST00000548436 DHX58Q96C10 678 aa21.17■□□□□ 0.98
PRPF40B-208ENST00000548436 RTFDC1Q9BY42 306 aaPredicted RBP21.17■□□□□ 0.98
PRPF40B-208ENST00000548436 BMP15O95972 392 aa21.16■□□□□ 0.98
PRPF40B-208ENST00000548436 FMR1Q06787 632 aaKnown RBP eCLIP21.16■□□□□ 0.98
PRPF40B-208ENST00000548436 SLC44A5Q8NCS7 719 aa21.16■□□□□ 0.98
PRPF40B-208ENST00000548436 FERMT2Q96AC1 680 aa21.16■□□□□ 0.98
PRPF40B-208ENST00000548436 NOL10Q9BSC4 688 aaKnown RBP21.16■□□□□ 0.98
PRPF40B-208ENST00000548436 PDCL3Q9H2J4 239 aa21.16■□□□□ 0.98
PRPF40B-208ENST00000548436 MKNK2Q9HBH9 465 aa21.16■□□□□ 0.98
PRPF40B-208ENST00000548436 PTGDRQ13258 359 aa21.16■□□□□ 0.98
PRPF40B-208ENST00000548436 PIK3AP1Q6ZUJ8 805 aa21.16■□□□□ 0.98
PRPF40B-208ENST00000548436 CCAR2Q8N163 923 aaKnown RBP21.16■□□□□ 0.98
PRPF40B-208ENST00000548436 LDHCP07864 332 aa21.15■□□□□ 0.98
PRPF40B-208ENST00000548436 ATP2C1P98194 919 aaPredicted RBP21.15■□□□□ 0.98
PRPF40B-208ENST00000548436 NYAP1Q6ZVC0 841 aa21.15■□□□□ 0.98
PRPF40B-208ENST00000548436 MAPKAPK5Q8IW41 473 aa21.15■□□□□ 0.98
PRPF40B-208ENST00000548436 TRIML1Q8N9V2 468 aa21.15■□□□□ 0.98
PRPF40B-208ENST00000548436 MLKLQ8NB16 471 aa21.15■□□□□ 0.98
PRPF40B-208ENST00000548436 KCND1Q9NSA2 647 aa21.15■□□□□ 0.98
PRPF40B-208ENST00000548436 TRMT1Q9NXH9 659 aaKnown RBP21.15■□□□□ 0.98
PRPF40B-208ENST00000548436 SAP30BPQ9UHR5 308 aaKnown RBP21.15■□□□□ 0.98
PRPF40B-208ENST00000548436 TRPC5Q9UL62 973 aaPredicted RBP21.15■□□□□ 0.98
PRPF40B-208ENST00000548436 MYO1BO43795 1136 aa21.14■□□□□ 0.98
PRPF40B-208ENST00000548436 SFPQP23246 707 aaKnown RBP eCLIP21.14■□□□□ 0.98
PRPF40B-208ENST00000548436 ATP2B4P23634 1241 aa21.14■□□□□ 0.98
PRPF40B-208ENST00000548436 ST5P78524 1137 aa21.14■□□□□ 0.98
PRPF40B-208ENST00000548436 CFAP100Q494V2 611 aa21.14■□□□□ 0.98
PRPF40B-208ENST00000548436 ZNF710Q8N1W2 664 aa21.14■□□□□ 0.98
PRPF40B-208ENST00000548436 CBFA2T2O43439 604 aa21.14■□□□□ 0.97
PRPF40B-208ENST00000548436 TSPY3P0CV98 308 aa21.14■□□□□ 0.97
PRPF40B-208ENST00000548436 TSPY8P0CW00 308 aa21.14■□□□□ 0.97
PRPF40B-208ENST00000548436 IL1R1P14778 569 aa21.14■□□□□ 0.97
PRPF40B-208ENST00000548436 ZNF772Q68DY9 489 aaPredicted RBP21.14■□□□□ 0.97
PRPF40B-208ENST00000548436 RBM17Q96I25 401 aaKnown RBP21.14■□□□□ 0.97
PRPF40B-208ENST00000548436 MED15Q96RN5 788 aa21.14■□□□□ 0.97
PRPF40B-208ENST00000548436 MAD2L2Q9UI95 211 aa21.14■□□□□ 0.97
PRPF40B-208ENST00000548436 GGA1Q9UJY5 639 aa21.14■□□□□ 0.97
PRPF40B-208ENST00000548436 DDX60LQ5H9U9 1706 aaKnown RBP21.14■□□□□ 0.97
PRPF40B-208ENST00000548436 MYH1P12882 1939 aa21.13■□□□□ 0.97
PRPF40B-208ENST00000548436 VWA3AA6NCI4 1184 aa21.13■□□□□ 0.97
PRPF40B-208ENST00000548436 TMEM232C9JQI7 657 aa21.13■□□□□ 0.97
PRPF40B-208ENST00000548436 SLFN14P0C7P3 912 aa21.13■□□□□ 0.97
PRPF40B-208ENST00000548436 BTDP43251 543 aa21.13■□□□□ 0.97
PRPF40B-208ENST00000548436 AFMP43652 599 aa21.13■□□□□ 0.97
PRPF40B-208ENST00000548436 NT5C2P49902 561 aa21.13■□□□□ 0.97
PRPF40B-208ENST00000548436 GRM4Q14833 912 aa21.13■□□□□ 0.97
PRPF40B-208ENST00000548436 SLC35G1Q2M3R5 365 aa21.13■□□□□ 0.97
PRPF40B-208ENST00000548436 HSP90AA4PQ58FG1 418 aa21.13■□□□□ 0.97
PRPF40B-208ENST00000548436 CEP135Q66GS9 1140 aa21.13■□□□□ 0.97
PRPF40B-208ENST00000548436 SH3RF1Q7Z6J0 888 aa21.13■□□□□ 0.97
PRPF40B-208ENST00000548436 AMOTL1Q8IY63 956 aa21.13■□□□□ 0.97
PRPF40B-208ENST00000548436 GPKOWQ92917 476 aaPredicted RBP eCLIP21.13■□□□□ 0.973e-7■■■■■ 29.3
PRPF40B-208ENST00000548436 PAGE5Q96GU1 130 aa21.13■□□□□ 0.97
PRPF40B-208ENST00000548436 TCP11L1Q9NUJ3 509 aa21.13■□□□□ 0.97
PRPF40B-208ENST00000548436 INTS13Q9NVM9 706 aa21.13■□□□□ 0.97
PRPF40B-208ENST00000548436 RASA1P20936 1047 aa21.13■□□□□ 0.97
PRPF40B-208ENST00000548436 PTPN21Q16825 1174 aa21.13■□□□□ 0.97
PRPF40B-208ENST00000548436 TRMT44Q8IYL2 757 aaKnown RBP21.13■□□□□ 0.97
PRPF40B-208ENST00000548436 ZNF444Q8N0Y2 327 aaPredicted RBP21.13■□□□□ 0.97
PRPF40B-208ENST00000548436 CASP1P29466 404 aa21.12■□□□□ 0.97
PRPF40B-208ENST00000548436 TRAPPC10P48553 1259 aa21.12■□□□□ 0.97
PRPF40B-208ENST00000548436 IL17AQ16552 155 aa21.12■□□□□ 0.97
PRPF40B-208ENST00000548436 E4F1Q66K89 784 aaPredicted RBP21.12■□□□□ 0.97
PRPF40B-208ENST00000548436 VSTM4Q8IW00 320 aa21.12■□□□□ 0.97
PRPF40B-208ENST00000548436 ENOX1Q8TC92 643 aaKnown RBP21.12■□□□□ 0.97
PRPF40B-208ENST00000548436 POLLQ9UGP5 575 aa21.12■□□□□ 0.97
PRPF40B-208ENST00000548436 DACH1Q9UI36 760 aa21.12■□□□□ 0.97
PRPF40B-208ENST00000548436 NFE2L3Q9Y4A8 694 aa21.12■□□□□ 0.97
PRPF40B-208ENST00000548436 FAM205AQ6ZU69 1335 aa21.11■□□□□ 0.97
PRPF40B-208ENST00000548436 GPR75-ASB3A0A0A6YYF3 556 aa21.11■□□□□ 0.97
PRPF40B-208ENST00000548436 CTIFO43310 598 aaKnown RBP21.11■□□□□ 0.97
PRPF40B-208ENST00000548436 ZNF18P17022 549 aa21.11■□□□□ 0.97
PRPF40B-208ENST00000548436 MCM7P33993 719 aa21.11■□□□□ 0.97
PRPF40B-208ENST00000548436 DDR1Q08345 913 aa21.11■□□□□ 0.97
PRPF40B-208ENST00000548436 PTPN14Q15678 1187 aa21.11■□□□□ 0.97
PRPF40B-208ENST00000548436 TYW1BQ6NUM6 668 aa21.11■□□□□ 0.97
PRPF40B-208ENST00000548436 PAXBP1Q9Y5B6 917 aa21.11■□□□□ 0.97
PRPF40B-208ENST00000548436 CCDC178Q5BJE1 867 aa21.11■□□□□ 0.97
PRPF40B-208ENST00000548436 BLIDQ8IZY5 108 aa21.11■□□□□ 0.97
PRPF40B-208ENST00000548436 TMEM47Q9BQJ4 181 aa21.11■□□□□ 0.97
PRPF40B-208ENST00000548436 QTRT2Q9H974 415 aaKnown RBP21.11■□□□□ 0.97
PRPF40B-208ENST00000548436 SH3GLB2Q9NR46 395 aa21.11■□□□□ 0.97
PRPF40B-208ENST00000548436 CYTH3O43739 400 aa21.1■□□□□ 0.97
PRPF40B-208ENST00000548436 BBOX1O75936 387 aa21.1■□□□□ 0.97
PRPF40B-208ENST00000548436 CALML3P27482 149 aa21.1■□□□□ 0.97
PRPF40B-208ENST00000548436 DHX8Q14562 1220 aaKnown RBP21.1■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms