RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 SCG2P13521 617 aa12.71□□□□□ -0.37
CUX1-212ENST00000547394 BMP6P22004 513 aa12.71□□□□□ -0.37
CUX1-212ENST00000547394 NOLC1Q14978 699 aaKnown RBP eCLIP12.71□□□□□ -0.373e-6■■□□□ 12.3
CUX1-212ENST00000547394 CACTINQ8WUQ7 758 aaKnown RBP12.71□□□□□ -0.37
CUX1-212ENST00000547394 UBA5Q9GZZ9 404 aa12.71□□□□□ -0.37
CUX1-212ENST00000547394 FRMPD2Q68DX3 1309 aaPredicted RBP12.71□□□□□ -0.37
CUX1-212ENST00000547394 TRIM75PA6NK02 468 aa12.71□□□□□ -0.37
CUX1-212ENST00000547394 CUTAO60888 179 aa12.71□□□□□ -0.37
CUX1-212ENST00000547394 HOXA10P31260 410 aaPredicted RBP12.71□□□□□ -0.37
CUX1-212ENST00000547394 TCP10Q12799 353 aa12.71□□□□□ -0.37
CUX1-212ENST00000547394 KRBA2Q6ZNG9 492 aa12.71□□□□□ -0.37
CUX1-212ENST00000547394 KIAA0825Q8IV33 1275 aa12.71□□□□□ -0.37
CUX1-212ENST00000547394 TRMT44Q8IYL2 757 aaKnown RBP12.71□□□□□ -0.37
CUX1-212ENST00000547394 LRRC47Q8N1G4 583 aaKnown RBP12.71□□□□□ -0.37
CUX1-212ENST00000547394 CEP95Q96GE4 821 aa12.71□□□□□ -0.37
CUX1-212ENST00000547394 GPR75-ASB3A0A0A6YYF3 556 aa12.71□□□□□ -0.38
CUX1-212ENST00000547394 LDHCP07864 332 aa12.71□□□□□ -0.38
CUX1-212ENST00000547394 XBP1P17861 261 aa12.71□□□□□ -0.38
CUX1-212ENST00000547394 PTPREP23469 700 aa12.71□□□□□ -0.38
CUX1-212ENST00000547394 ATP2B2Q01814 1243 aa12.71□□□□□ -0.38
CUX1-212ENST00000547394 ZFPM1Q8IX07 1006 aa12.71□□□□□ -0.38
CUX1-212ENST00000547394 AMOTL1Q8IY63 956 aa12.71□□□□□ -0.38
CUX1-212ENST00000547394 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.71□□□□□ -0.38
CUX1-212ENST00000547394 RBM28Q9NW13 759 aaKnown RBP12.71□□□□□ -0.38
CUX1-212ENST00000547394 MAD2L2Q9UI95 211 aa12.71□□□□□ -0.38
CUX1-212ENST00000547394 ATP6V0A2Q9Y487 856 aa12.71□□□□□ -0.38
CUX1-212ENST00000547394 NFIAQ12857 509 aa12.7□□□□□ -0.38
CUX1-212ENST00000547394 PTGDRQ13258 359 aa12.7□□□□□ -0.38
CUX1-212ENST00000547394 SMYD4Q8IYR2 804 aaPredicted RBP12.7□□□□□ -0.38
CUX1-212ENST00000547394 AKT1S1Q96B36 256 aa12.7□□□□□ -0.38
CUX1-212ENST00000547394 CRAMP1Q96RY5 1269 aa12.7□□□□□ -0.38
CUX1-212ENST00000547394 PLIN2Q99541 437 aa12.7□□□□□ -0.38
CUX1-212ENST00000547394 IFNKQ9P0W0 207 aa12.7□□□□□ -0.38
CUX1-212ENST00000547394 MYH6P13533 1939 aa12.7□□□□□ -0.38
CUX1-212ENST00000547394 NLRP12P59046 1061 aa12.7□□□□□ -0.38
CUX1-212ENST00000547394 PPP4CP60510 307 aa12.7□□□□□ -0.38
CUX1-212ENST00000547394 RBM6P78332 1123 aaKnown RBP12.7□□□□□ -0.38
CUX1-212ENST00000547394 GOLGA8FQ08AF8 430 aa12.7□□□□□ -0.38
CUX1-212ENST00000547394 GOLGA8DPQ0D2H9 430 aa12.7□□□□□ -0.38
CUX1-212ENST00000547394 SYMPKQ92797 1274 aaKnown RBP12.7□□□□□ -0.38
CUX1-212ENST00000547394 UIMC1Q96RL1 719 aa12.7□□□□□ -0.38
CUX1-212ENST00000547394 PARP3Q9Y6F1 533 aa12.7□□□□□ -0.38
CUX1-212ENST00000547394 CCDC88AQ3V6T2 1871 aa12.7□□□□□ -0.38
CUX1-212ENST00000547394 CALM1P0DP23 149 aa12.69□□□□□ -0.38
CUX1-212ENST00000547394 CALM2P0DP24 149 aa12.69□□□□□ -0.38
CUX1-212ENST00000547394 CALM3P0DP25 149 aa12.69□□□□□ -0.38
CUX1-212ENST00000547394 SP8Q8IXZ3 490 aa12.69□□□□□ -0.38
CUX1-212ENST00000547394 NLGN1Q8N2Q7 840 aa12.69□□□□□ -0.38
CUX1-212ENST00000547394 MTA3Q9BTC8 594 aa12.69□□□□□ -0.38
CUX1-212ENST00000547394 XPO4Q9C0E2 1151 aaKnown RBP12.69□□□□□ -0.38
CUX1-212ENST00000547394 EN1Q05925 392 aaPredicted RBP12.69□□□□□ -0.38
CUX1-212ENST00000547394 PFKFB3Q16875 520 aaPredicted RBP12.69□□□□□ -0.38
CUX1-212ENST00000547394 TTC38Q5R3I4 469 aa12.69□□□□□ -0.38
CUX1-212ENST00000547394 WWC2Q6AWC2 1192 aa12.69□□□□□ -0.38
CUX1-212ENST00000547394 DPF2Q92785 391 aa12.69□□□□□ -0.38
CUX1-212ENST00000547394 PODXL2Q9NZ53 605 aa12.69□□□□□ -0.38
CUX1-212ENST00000547394 KIAA1551Q9HCM1 1747 aa12.69□□□□□ -0.38
CUX1-212ENST00000547394 USP17L5A8MUK1 530 aa12.68□□□□□ -0.38
CUX1-212ENST00000547394 RBM5P52756 815 aaKnown RBP eCLIP12.68□□□□□ -0.384e-7■■■□□ 19.1
CUX1-212ENST00000547394 NCAPHQ15003 741 aa12.68□□□□□ -0.38
CUX1-212ENST00000547394 TNFRSF25Q93038 417 aa12.68□□□□□ -0.38
CUX1-212ENST00000547394 USP40Q9NVE5 1235 aa12.68□□□□□ -0.38
CUX1-212ENST00000547394 PP2D1A8MPX8 630 aa12.68□□□□□ -0.38
CUX1-212ENST00000547394 KLRF2D3W0D1 207 aa12.68□□□□□ -0.38
CUX1-212ENST00000547394 PCP11498 1178 aaKnown RBP12.68□□□□□ -0.38
CUX1-212ENST00000547394 AKR1B1P15121 316 aa12.68□□□□□ -0.38
CUX1-212ENST00000547394 RCAN1P53805 252 aa12.68□□□□□ -0.38
CUX1-212ENST00000547394 IL17AQ16552 155 aa12.68□□□□□ -0.38
CUX1-212ENST00000547394 KLHL10Q6JEL2 608 aa12.68□□□□□ -0.38
CUX1-212ENST00000547394 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.68□□□□□ -0.38
CUX1-212ENST00000547394 C2CD5Q86YS7 1000 aa12.68□□□□□ -0.38
CUX1-212ENST00000547394 NAT10Q9H0A0 1025 aaKnown RBP12.68□□□□□ -0.38
CUX1-212ENST00000547394 BLZF1Q9H2G9 400 aa12.68□□□□□ -0.38
CUX1-212ENST00000547394 FAM13BQ9NYF5 915 aa12.68□□□□□ -0.38
CUX1-212ENST00000547394 SRPRBQ9Y5M8 271 aaKnown RBP12.68□□□□□ -0.38
CUX1-212ENST00000547394 GOLGA6L6A8MZA4 724 aa12.67□□□□□ -0.38
CUX1-212ENST00000547394 MPHOSPH10O00566 681 aaKnown RBP12.67□□□□□ -0.38
CUX1-212ENST00000547394 KIF5BP33176 963 aa12.67□□□□□ -0.38
CUX1-212ENST00000547394 POSTNQ15063 836 aa12.67□□□□□ -0.38
CUX1-212ENST00000547394 EZH2Q15910 746 aaKnown RBP12.67□□□□□ -0.38
CUX1-212ENST00000547394 INF2Q27J81 1249 aa12.67□□□□□ -0.38
CUX1-212ENST00000547394 C15orf52Q6ZUT6 534 aaKnown RBP12.67□□□□□ -0.38
CUX1-212ENST00000547394 KIAA1524Q8TCG1 905 aa12.67□□□□□ -0.38
CUX1-212ENST00000547394 HSD3B7Q9H2F3 369 aa12.67□□□□□ -0.38
CUX1-212ENST00000547394 BRMS1Q9HCU9 246 aa12.67□□□□□ -0.38
CUX1-212ENST00000547394 KLRG2A4D1S0 409 aaPredicted RBP12.67□□□□□ -0.38
CUX1-212ENST00000547394 STX17P56962 302 aa12.67□□□□□ -0.38
CUX1-212ENST00000547394 FMR1Q06787 632 aaKnown RBP eCLIP12.67□□□□□ -0.384e-6■■■■□ 21.6
CUX1-212ENST00000547394 DGKHQ86XP1 1220 aa12.67□□□□□ -0.38
CUX1-212ENST00000547394 FANCLQ9NW38 375 aa12.67□□□□□ -0.38
CUX1-212ENST00000547394 MAN1B1Q9UKM7 699 aa12.67□□□□□ -0.38
CUX1-212ENST00000547394 SNED1Q8TER0 1413 aa12.67□□□□□ -0.38
CUX1-212ENST00000547394 NPR1P16066 1061 aa12.67□□□□□ -0.38
CUX1-212ENST00000547394 RBM10P98175 930 aaKnown RBP12.67□□□□□ -0.38
CUX1-212ENST00000547394 MDM2Q00987 491 aaPredicted RBP12.67□□□□□ -0.38
CUX1-212ENST00000547394 C16orf86Q6ZW13 317 aa12.67□□□□□ -0.38
CUX1-212ENST00000547394 TMC6Q7Z403 805 aa12.67□□□□□ -0.38
CUX1-212ENST00000547394 C16orf45Q96MC5 204 aaPredicted RBP12.67□□□□□ -0.38
CUX1-212ENST00000547394 GPCPD1Q9NPB8 672 aa12.67□□□□□ -0.38
CUX1-212ENST00000547394 USP27XA6NNY8 438 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms