RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.05■□□□□ 0.32
SNHG1-213ENST00000540725 ATP8A2Q9NTI2 1148 aa17.05■□□□□ 0.32
SNHG1-213ENST00000540725 STAP2Q9UGK3 403 aa17.05■□□□□ 0.32
SNHG1-213ENST00000540725 IVNS1ABPQ9Y6Y0 642 aa17.05■□□□□ 0.32
SNHG1-213ENST00000540725 ZNF236Q9UL36 1845 aa17.05■□□□□ 0.32
SNHG1-213ENST00000540725 ZNFX1Q9P2E3 1918 aaKnown RBP17.05■□□□□ 0.32
SNHG1-213ENST00000540725 COL11A1P12107 1806 aaPredicted RBP17.04■□□□□ 0.32
SNHG1-213ENST00000540725 TANGO6Q9C0B7 1094 aa17.04■□□□□ 0.32
SNHG1-213ENST00000540725 ZMYND8Q9ULU4 1186 aaPredicted RBP17.04■□□□□ 0.32
SNHG1-213ENST00000540725 PFASO15067 1338 aa17.04■□□□□ 0.32
SNHG1-213ENST00000540725 GRB14Q14449 540 aa17.03■□□□□ 0.32
SNHG1-213ENST00000540725 COG2Q14746 738 aa17.03■□□□□ 0.32
SNHG1-213ENST00000540725 C20orf194Q5TEA3 1177 aa17.03■□□□□ 0.32
SNHG1-213ENST00000540725 MFSD14CQ5VZR4 134 aa17.03■□□□□ 0.32
SNHG1-213ENST00000540725 LHX8Q68G74 356 aa17.03■□□□□ 0.32
SNHG1-213ENST00000540725 LRRCC1Q9C099 1032 aa17.03■□□□□ 0.32
SNHG1-213ENST00000540725 FLRT1Q9NZU1 646 aa17.03■□□□□ 0.32
SNHG1-213ENST00000540725 DNAH12Q6ZR08 3092 aa17.03■□□□□ 0.32
SNHG1-213ENST00000540725 CYP2D7A0A087X1C5 515 aa17.02■□□□□ 0.32
SNHG1-213ENST00000540725 CHGBP05060 677 aa17.02■□□□□ 0.32
SNHG1-213ENST00000540725 HOXC6P09630 235 aa17.02■□□□□ 0.32
SNHG1-213ENST00000540725 AKR1B1P15121 316 aa17.02■□□□□ 0.32
SNHG1-213ENST00000540725 UBE3CQ15386 1083 aa17.02■□□□□ 0.32
SNHG1-213ENST00000540725 KIAA1755Q5JYT7 1200 aa17.02■□□□□ 0.32
SNHG1-213ENST00000540725 CLEC10AQ8IUN9 316 aa17.02■□□□□ 0.32
SNHG1-213ENST00000540725 HOXC10Q9NYD6 342 aa17.02■□□□□ 0.32
SNHG1-213ENST00000540725 SMIM22K7EJ46 135 aa17.02■□□□□ 0.31
SNHG1-213ENST00000540725 SMARCA5O60264 1052 aaPredicted RBP17.02■□□□□ 0.31
SNHG1-213ENST00000540725 COL6A1P12109 1028 aa17.02■□□□□ 0.31
SNHG1-213ENST00000540725 ATP2B2Q01814 1243 aa17.02■□□□□ 0.31
SNHG1-213ENST00000540725 ICA1Q05084 483 aa17.02■□□□□ 0.31
SNHG1-213ENST00000540725 C12orf60Q5U649 245 aa17.02■□□□□ 0.31
SNHG1-213ENST00000540725 AMOTL1Q8IY63 956 aa17.02■□□□□ 0.31
SNHG1-213ENST00000540725 NPLOC4Q8TAT6 608 aa17.02■□□□□ 0.31
SNHG1-213ENST00000540725 LPAR1Q92633 364 aa17.02■□□□□ 0.31
SNHG1-213ENST00000540725 GDF15Q99988 308 aa17.02■□□□□ 0.31
SNHG1-213ENST00000540725 MOV10L1Q9BXT6 1211 aaKnown RBP17.02■□□□□ 0.31
SNHG1-213ENST00000540725 ARHGEF10LQ9HCE6 1279 aa17.02■□□□□ 0.31
SNHG1-213ENST00000540725 USP17L12C9JPN9 530 aa17.01■□□□□ 0.31
SNHG1-213ENST00000540725 USP17L21D6R901 530 aa17.01■□□□□ 0.31
SNHG1-213ENST00000540725 SYN1P17600 705 aa17.01■□□□□ 0.31
SNHG1-213ENST00000540725 CDK8P49336 464 aa17.01■□□□□ 0.31
SNHG1-213ENST00000540725 ZSCAN25Q6NSZ9 544 aa17.01■□□□□ 0.31
SNHG1-213ENST00000540725 SIAH1Q8IUQ4 282 aa17.01■□□□□ 0.31
SNHG1-213ENST00000540725 DDRGK1Q96HY6 314 aa17.01■□□□□ 0.31
SNHG1-213ENST00000540725 CCDC17Q96LX7 622 aa17.01■□□□□ 0.31
SNHG1-213ENST00000540725 SPATC1LQ9H0A9 340 aa17.01■□□□□ 0.31
SNHG1-213ENST00000540725 SH2D4AQ9H788 454 aa17.01■□□□□ 0.31
SNHG1-213ENST00000540725 TMX2Q9Y320 296 aa17.01■□□□□ 0.31
SNHG1-213ENST00000540725 SLC4A4Q9Y6R1 1079 aa17.01■□□□□ 0.31
SNHG1-213ENST00000540725 GREB1LQ9C091 1923 aaPredicted RBP17■□□□□ 0.31
SNHG1-213ENST00000540725 DSG3P32926 999 aa17■□□□□ 0.31
SNHG1-213ENST00000540725 BMP8BP34820 402 aa17■□□□□ 0.31
SNHG1-213ENST00000540725 C16orf86Q6ZW13 317 aa17■□□□□ 0.31
SNHG1-213ENST00000540725 SPICE1Q8N0Z3 855 aa17■□□□□ 0.31
SNHG1-213ENST00000540725 MB21D1Q8N884 522 aa17■□□□□ 0.31
SNHG1-213ENST00000540725 SHCBP1Q8NEM2 672 aa17■□□□□ 0.31
SNHG1-213ENST00000540725 PUS7LQ9H0K6 701 aaKnown RBP17■□□□□ 0.31
SNHG1-213ENST00000540725 VCPKMTQ9H867 229 aa17■□□□□ 0.31
SNHG1-213ENST00000540725 SMCHD1A6NHR9 2005 aa16.99■□□□□ 0.31
SNHG1-213ENST00000540725 SOX1O00570 391 aaPredicted RBP16.99■□□□□ 0.31
SNHG1-213ENST00000540725 STRNO43815 780 aa16.99■□□□□ 0.31
SNHG1-213ENST00000540725 FLOT1O75955 427 aa16.99■□□□□ 0.31
SNHG1-213ENST00000540725 ERCC3P19447 782 aa16.99■□□□□ 0.31
SNHG1-213ENST00000540725 ADORA2AP29274 412 aa16.99■□□□□ 0.31
SNHG1-213ENST00000540725 CNGA1P29973 690 aa16.99■□□□□ 0.31
SNHG1-213ENST00000540725 CYP2C19P33261 490 aa16.99■□□□□ 0.31
SNHG1-213ENST00000540725 DPP9Q86TI2 863 aa16.99■□□□□ 0.31
SNHG1-213ENST00000540725 ATG4CQ96DT6 458 aa16.99■□□□□ 0.31
SNHG1-213ENST00000540725 DDX20Q9UHI6 824 aaKnown RBP16.99■□□□□ 0.31
SNHG1-213ENST00000540725 PLXNA1Q9UIW2 1896 aa16.99■□□□□ 0.31
SNHG1-213ENST00000540725 MYH4Q9Y623 1939 aa16.98■□□□□ 0.31
SNHG1-213ENST00000540725 WDR46O15213 610 aaKnown RBP16.98■□□□□ 0.31
SNHG1-213ENST00000540725 MSCO60682 206 aa16.98■□□□□ 0.31
SNHG1-213ENST00000540725 IGHA2P01877 340 aa16.98■□□□□ 0.31
SNHG1-213ENST00000540725 MAGEA10P43363 369 aaPredicted RBP16.98■□□□□ 0.31
SNHG1-213ENST00000540725 PLS1Q14651 629 aa16.98■□□□□ 0.31
SNHG1-213ENST00000540725 LRRC26Q2I0M4 334 aa16.98■□□□□ 0.31
SNHG1-213ENST00000540725 CTR9Q6PD62 1173 aa16.98■□□□□ 0.31
SNHG1-213ENST00000540725 TRPV1Q8NER1 839 aa16.98■□□□□ 0.31
SNHG1-213ENST00000540725 ECHDC1Q9NTX5 307 aa16.98■□□□□ 0.31
SNHG1-213ENST00000540725 CYBAP13498 195 aa16.97■□□□□ 0.31
SNHG1-213ENST00000540725 EEF2P13639 858 aaKnown RBP16.97■□□□□ 0.31
SNHG1-213ENST00000540725 OLFML2BQ68BL8 750 aa16.97■□□□□ 0.31
SNHG1-213ENST00000540725 SAMD1Q6SPF0 538 aaPredicted RBP16.97■□□□□ 0.31
SNHG1-213ENST00000540725 LRCH3Q96II8 777 aa16.97■□□□□ 0.31
SNHG1-213ENST00000540725 ARPP21Q9UBL0 812 aaPredicted RBP16.97■□□□□ 0.31
SNHG1-213ENST00000540725 NCAPG2Q86XI2 1143 aa16.96■□□□□ 0.31
SNHG1-213ENST00000540725 STRBPQ96SI9 672 aaKnown RBP16.96■□□□□ 0.31
SNHG1-213ENST00000540725 MROH8Q9H579 483 aa16.96■□□□□ 0.31
SNHG1-213ENST00000540725 KANSL2Q9H9L4 492 aa16.96■□□□□ 0.31
SNHG1-213ENST00000540725 COBLO75128 1261 aa16.95■□□□□ 0.3
SNHG1-213ENST00000540725 ABRAQ8N0Z2 381 aa16.95■□□□□ 0.3
SNHG1-213ENST00000540725 KBTBD3Q8NAB2 608 aa16.95■□□□□ 0.3
SNHG1-213ENST00000540725 GPATCH3Q96I76 525 aa16.95■□□□□ 0.3
SNHG1-213ENST00000540725 SENP6Q9GZR1 1112 aaPredicted RBP16.95■□□□□ 0.3
SNHG1-213ENST00000540725 DCTPP1Q9H773 170 aa16.95■□□□□ 0.3
SNHG1-213ENST00000540725 SLC5A4Q9NY91 659 aa16.95■□□□□ 0.3
SNHG1-213ENST00000540725 TMEM132BQ14DG7 1078 aa16.94■□□□□ 0.3
SNHG1-213ENST00000540725 TSHZ3Q63HK5 1081 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms