RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 SLC52A2Q9HAB3 445 aa14.43□□□□□ -0.1
SFSWAP-209ENST00000540469 SRPRBQ9Y5M8 271 aaKnown RBP14.43□□□□□ -0.1
SFSWAP-209ENST00000540469 MRC1P22897 1456 aa14.43□□□□□ -0.1
SFSWAP-209ENST00000540469 AMPD2Q01433 879 aa14.43□□□□□ -0.1
SFSWAP-209ENST00000540469 CCDC181Q5TID7 509 aa14.43□□□□□ -0.1
SFSWAP-209ENST00000540469 TRAPPC11Q7Z392 1133 aa14.43□□□□□ -0.1
SFSWAP-209ENST00000540469 PLEKHG1Q9ULL1 1385 aa14.43□□□□□ -0.1
SFSWAP-209ENST00000540469 KDM3BQ7LBC6 1761 aa14.42□□□□□ -0.1
SFSWAP-209ENST00000540469 KCNJ18B7U540 433 aa14.42□□□□□ -0.1
SFSWAP-209ENST00000540469 ZNF185O15231 689 aa14.42□□□□□ -0.1
SFSWAP-209ENST00000540469 FOXP2O15409 715 aa14.42□□□□□ -0.1
SFSWAP-209ENST00000540469 HSF2BPO75031 334 aa14.42□□□□□ -0.1
SFSWAP-209ENST00000540469 CSB-PGBD3P0DP91 1061 aa14.42□□□□□ -0.1
SFSWAP-209ENST00000540469 KCNJ12Q14500 433 aa14.42□□□□□ -0.1
SFSWAP-209ENST00000540469 TTF1Q15361 905 aaPredicted RBP14.42□□□□□ -0.1
SFSWAP-209ENST00000540469 OR8K1Q8NGG5 319 aa14.42□□□□□ -0.1
SFSWAP-209ENST00000540469 PLBD2Q8NHP8 589 aa14.42□□□□□ -0.1
SFSWAP-209ENST00000540469 PAGE5Q96GU1 130 aa14.42□□□□□ -0.1
SFSWAP-209ENST00000540469 RPGRIP1Q96KN7 1286 aa14.42□□□□□ -0.1
SFSWAP-209ENST00000540469 NAPBQ9H115 298 aa14.42□□□□□ -0.1
SFSWAP-209ENST00000540469 MYBL2P10244 700 aa14.42□□□□□ -0.1
SFSWAP-209ENST00000540469 KRT83P78385 493 aa14.42□□□□□ -0.1
SFSWAP-209ENST00000540469 FOXO4P98177 505 aa14.42□□□□□ -0.1
SFSWAP-209ENST00000540469 ELOA2Q8IYF1 753 aaPredicted RBP14.42□□□□□ -0.1
SFSWAP-209ENST00000540469 SYMPKQ92797 1274 aaKnown RBP14.42□□□□□ -0.1
SFSWAP-209ENST00000540469 PSMB7Q99436 277 aa14.42□□□□□ -0.1
SFSWAP-209ENST00000540469 RNF225M0QZC1 329 aaPredicted RBP14.42□□□□□ -0.1
SFSWAP-209ENST00000540469 CLGNO14967 610 aa14.42□□□□□ -0.1
SFSWAP-209ENST00000540469 XBP1P17861 261 aa14.42□□□□□ -0.1
SFSWAP-209ENST00000540469 PDCLQ13371 301 aa14.42□□□□□ -0.1
SFSWAP-209ENST00000540469 SWT1Q5T5J6 900 aaKnown RBP14.42□□□□□ -0.1
SFSWAP-209ENST00000540469 KCTD16Q68DU8 428 aa14.42□□□□□ -0.1
SFSWAP-209ENST00000540469 APTXQ7Z2E3 356 aaKnown RBP14.42□□□□□ -0.1
SFSWAP-209ENST00000540469 NBPF3Q9H094 633 aa14.42□□□□□ -0.1
SFSWAP-209ENST00000540469 POLD4Q9HCU8 107 aa14.42□□□□□ -0.1
SFSWAP-209ENST00000540469 HEG1Q9ULI3 1381 aa14.42□□□□□ -0.1
SFSWAP-209ENST00000540469 EIF3HO15372 352 aaKnown RBP eCLIP14.41□□□□□ -0.1
SFSWAP-209ENST00000540469 PAK1Q13153 545 aa14.41□□□□□ -0.1
SFSWAP-209ENST00000540469 CDKAL1Q5VV42 579 aa14.41□□□□□ -0.1
SFSWAP-209ENST00000540469 CCNI2Q6ZMN8 369 aaPredicted RBP14.41□□□□□ -0.1
SFSWAP-209ENST00000540469 B4GALNT4Q76KP1 1039 aa14.41□□□□□ -0.1
SFSWAP-209ENST00000540469 OXER1Q8TDS5 423 aa14.41□□□□□ -0.1
SFSWAP-209ENST00000540469 TBC1D2BQ9UPU7 963 aa14.41□□□□□ -0.1
SFSWAP-209ENST00000540469 FMNL1O95466 1100 aaPredicted RBP14.41□□□□□ -0.1
SFSWAP-209ENST00000540469 CCDC172P0C7W6 258 aa14.41□□□□□ -0.1
SFSWAP-209ENST00000540469 CYLC1P35663 651 aaPredicted RBP14.41□□□□□ -0.1
SFSWAP-209ENST00000540469 CTDSPL2Q05D32 466 aa14.41□□□□□ -0.1
SFSWAP-209ENST00000540469 CABS1Q96KC9 395 aa14.41□□□□□ -0.1
SFSWAP-209ENST00000540469 GSDMAQ96QA5 445 aa14.41□□□□□ -0.1
SFSWAP-209ENST00000540469 MAGEC2Q9UBF1 373 aaPredicted RBP14.41□□□□□ -0.1
SFSWAP-209ENST00000540469 FAM184BQ9ULE4 1060 aa14.41□□□□□ -0.1
SFSWAP-209ENST00000540469 TRIM21P19474 475 aaKnown RBP14.41□□□□□ -0.1
SFSWAP-209ENST00000540469 PBX1P40424 430 aa14.41□□□□□ -0.1
SFSWAP-209ENST00000540469 CUL4BQ13620 913 aa14.41□□□□□ -0.1
SFSWAP-209ENST00000540469 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.41□□□□□ -0.1
SFSWAP-209ENST00000540469 NELFBQ8WX92 580 aa14.41□□□□□ -0.1
SFSWAP-209ENST00000540469 WDR19Q8NEZ3 1342 aa14.41□□□□□ -0.1
SFSWAP-209ENST00000540469 TARSL2A2RTX5 802 aaKnown RBP14.4□□□□□ -0.1
SFSWAP-209ENST00000540469 GOLGA8KD6RF30 607 aa14.4□□□□□ -0.1
SFSWAP-209ENST00000540469 ECM2O94769 699 aaPredicted RBP14.4□□□□□ -0.1
SFSWAP-209ENST00000540469 GCP02774 474 aa14.4□□□□□ -0.1
SFSWAP-209ENST00000540469 CDR1P51861 262 aa14.4□□□□□ -0.1
SFSWAP-209ENST00000540469 PPARDQ03181 441 aa14.4□□□□□ -0.1
SFSWAP-209ENST00000540469 NTRK3Q16288 839 aa14.4□□□□□ -0.1
SFSWAP-209ENST00000540469 FOXP1Q9H334 677 aaPredicted RBP14.4□□□□□ -0.1
SFSWAP-209ENST00000540469 RGPD8O14715 1765 aaPredicted RBP14.4□□□□□ -0.1
SFSWAP-209ENST00000540469 DIP2AQ14689 1571 aa14.4□□□□□ -0.1
SFSWAP-209ENST00000540469 MED1Q15648 1581 aaPredicted RBP14.4□□□□□ -0.1
SFSWAP-209ENST00000540469 TTC26A0AVF1 554 aa14.4□□□□□ -0.1
SFSWAP-209ENST00000540469 MYO1FO00160 1098 aa14.4□□□□□ -0.1
SFSWAP-209ENST00000540469 SEMA3EO15041 775 aa14.4□□□□□ -0.1
SFSWAP-209ENST00000540469 MMP14P50281 582 aa14.4□□□□□ -0.1
SFSWAP-209ENST00000540469 SLC7A5Q01650 507 aa14.4□□□□□ -0.1
SFSWAP-209ENST00000540469 WTAPQ15007 396 aa14.4□□□□□ -0.1
SFSWAP-209ENST00000540469 ZNF174Q15697 407 aa14.4□□□□□ -0.1
SFSWAP-209ENST00000540469 METTL24Q5JXM2 366 aa14.4□□□□□ -0.1
SFSWAP-209ENST00000540469 ZNF579Q8NAF0 562 aaKnown RBP14.4□□□□□ -0.1
SFSWAP-209ENST00000540469 LY9Q9HBG7 655 aa14.4□□□□□ -0.1
SFSWAP-209ENST00000540469 ITIH6Q6UXX5 1313 aa14.4□□□□□ -0.1
SFSWAP-209ENST00000540469 MYH8P13535 1937 aa14.4□□□□□ -0.1
SFSWAP-209ENST00000540469 hCG_1642624A0A1W2PR95 340 aa14.4□□□□□ -0.1
SFSWAP-209ENST00000540469 PSMD14O00487 310 aa14.4□□□□□ -0.1
SFSWAP-209ENST00000540469 CCDC96Q2M329 555 aa14.4□□□□□ -0.1
SFSWAP-209ENST00000540469 MICALCLQ6ZW33 695 aa14.4□□□□□ -0.1
SFSWAP-209ENST00000540469 NKX2-3Q8TAU0 364 aa14.4□□□□□ -0.1
SFSWAP-209ENST00000540469 VPS54Q9P1Q0 977 aa14.4□□□□□ -0.1
SFSWAP-209ENST00000540469 DEXIO95424 95 aa14.39□□□□□ -0.11
SFSWAP-209ENST00000540469 IFNAR1P17181 557 aa14.39□□□□□ -0.11
SFSWAP-209ENST00000540469 TATP17735 454 aaPredicted RBP14.39□□□□□ -0.11
SFSWAP-209ENST00000540469 NAP1L1P55209 391 aaKnown RBP14.39□□□□□ -0.11
SFSWAP-209ENST00000540469 ZC3H6P61129 1189 aaKnown RBP14.39□□□□□ -0.11
SFSWAP-209ENST00000540469 KIF5AQ12840 1032 aa14.39□□□□□ -0.11
SFSWAP-209ENST00000540469 TICAM2Q86XR7 235 aa14.39□□□□□ -0.11
SFSWAP-209ENST00000540469 RRP36Q96EU6 259 aaKnown RBP14.39□□□□□ -0.11
SFSWAP-209ENST00000540469 CEP83Q9Y592 693 aa14.39□□□□□ -0.11
SFSWAP-209ENST00000540469 OVOS2A0A0G2JMS6 1433 aa14.39□□□□□ -0.11
SFSWAP-209ENST00000540469 CCDC196A0A1B0GTZ2 297 aa14.39□□□□□ -0.11
SFSWAP-209ENST00000540469 FAM205CA6NFA0 338 aa14.39□□□□□ -0.11
SFSWAP-209ENST00000540469 PPP1R3GB7ZBB8 358 aa14.39□□□□□ -0.11
SFSWAP-209ENST00000540469 TTLL7Q6ZT98 887 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms