RNA–Protein interactions for RNA: ENST00000538456.3

SMARCA4-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 3

Gene SMARCA4, Length 738 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-206ENST00000538456 MAP3K12Q12852 859 aa17.04■□□□□ 0.32
SMARCA4-206ENST00000538456 ZKSCAN2Q63HK3 967 aa17.04■□□□□ 0.32
SMARCA4-206ENST00000538456 MOV10L1Q9BXT6 1211 aaKnown RBP17.04■□□□□ 0.32
SMARCA4-206ENST00000538456 POLR3DP05423 398 aaPredicted RBP17.03■□□□□ 0.32
SMARCA4-206ENST00000538456 EVX2Q03828 476 aa17.03■□□□□ 0.32
SMARCA4-206ENST00000538456 NOP58Q9Y2X3 529 aaKnown RBP17.03■□□□□ 0.32
SMARCA4-206ENST00000538456 SHHQ15465 462 aa17.02■□□□□ 0.32
SMARCA4-206ENST00000538456 TRIM60Q495X7 471 aa17.02■□□□□ 0.32
SMARCA4-206ENST00000538456 C9orf50Q5SZB4 431 aa17.02■□□□□ 0.32
SMARCA4-206ENST00000538456 ARRDC4Q8NCT1 418 aa17.02■□□□□ 0.32
SMARCA4-206ENST00000538456 MAGEB6P1A0A0J9YX57 407 aa17.01■□□□□ 0.31
SMARCA4-206ENST00000538456 A0A1W2PRG0 241 aa17.01■□□□□ 0.31
SMARCA4-206ENST00000538456 IGHA2P01877 340 aa17.01■□□□□ 0.31
SMARCA4-206ENST00000538456 ERCC3P19447 782 aa17.01■□□□□ 0.31
SMARCA4-206ENST00000538456 PLS1Q14651 629 aa17.01■□□□□ 0.31
SMARCA4-206ENST00000538456 COG2Q14746 738 aa17.01■□□□□ 0.31
SMARCA4-206ENST00000538456 OLFML2BQ68BL8 750 aa17.01■□□□□ 0.31
SMARCA4-206ENST00000538456 SAMD1Q6SPF0 538 aaPredicted RBP17.01■□□□□ 0.31
SMARCA4-206ENST00000538456 SLC39A5Q6ZMH5 540 aa17.01■□□□□ 0.31
SMARCA4-206ENST00000538456 AACSQ86V21 672 aa17.01■□□□□ 0.31
SMARCA4-206ENST00000538456 ITPRIPQ8IWB1 547 aa17.01■□□□□ 0.31
SMARCA4-206ENST00000538456 FTSJ3Q8IY81 847 aaKnown RBP17.01■□□□□ 0.31
SMARCA4-206ENST00000538456 FERMT2Q96AC1 680 aa17.01■□□□□ 0.31
SMARCA4-206ENST00000538456 RIOK1Q9BRS2 568 aaKnown RBP17.01■□□□□ 0.31
SMARCA4-206ENST00000538456 SPATC1LQ9H0A9 340 aa17.01■□□□□ 0.31
SMARCA4-206ENST00000538456 MCM9Q9NXL9 1143 aa17.01■□□□□ 0.31
SMARCA4-206ENST00000538456 ZNFX1Q9P2E3 1918 aaKnown RBP17■□□□□ 0.31
SMARCA4-206ENST00000538456 SEPT4O43236 478 aa17■□□□□ 0.31
SMARCA4-206ENST00000538456 COBLO75128 1261 aa17■□□□□ 0.31
SMARCA4-206ENST00000538456 PRAMEF19Q5SWL8 479 aa17■□□□□ 0.31
SMARCA4-206ENST00000538456 BADQ92934 168 aa17■□□□□ 0.31
SMARCA4-206ENST00000538456 CDX2Q99626 313 aaPredicted RBP17■□□□□ 0.31
SMARCA4-206ENST00000538456 HOXC10Q9NYD6 342 aa17■□□□□ 0.31
SMARCA4-206ENST00000538456 COL11A1P12107 1806 aaPredicted RBP17■□□□□ 0.31
SMARCA4-206ENST00000538456 PARP14Q460N5 1801 aa17■□□□□ 0.31
SMARCA4-206ENST00000538456 SPTBN5Q9NRC6 3674 aaKnown RBP16.99■□□□□ 0.31
SMARCA4-206ENST00000538456 STRNO43815 780 aa16.99■□□□□ 0.31
SMARCA4-206ENST00000538456 ADCYAP1R1P41586 468 aa16.99■□□□□ 0.31
SMARCA4-206ENST00000538456 GABPAQ06546 454 aa16.99■□□□□ 0.31
SMARCA4-206ENST00000538456 FAM47AQ5JRC9 791 aa16.99■□□□□ 0.31
SMARCA4-206ENST00000538456 KIAA1755Q5JYT7 1200 aa16.99■□□□□ 0.31
SMARCA4-206ENST00000538456 NCAPG2Q86XI2 1143 aa16.99■□□□□ 0.31
SMARCA4-206ENST00000538456 CLEC10AQ8IUN9 316 aa16.99■□□□□ 0.31
SMARCA4-206ENST00000538456 SPICE1Q8N0Z3 855 aa16.99■□□□□ 0.31
SMARCA4-206ENST00000538456 SLC44A5Q8NCS7 719 aa16.99■□□□□ 0.31
SMARCA4-206ENST00000538456 CRNKL1Q9BZJ0 848 aaKnown RBP16.99■□□□□ 0.31
SMARCA4-206ENST00000538456 PDLIM7Q9NR12 457 aa16.99■□□□□ 0.31
SMARCA4-206ENST00000538456 EXOC6BQ9Y2D4 811 aa16.99■□□□□ 0.31
SMARCA4-206ENST00000538456 SMCHD1A6NHR9 2005 aa16.99■□□□□ 0.31
SMARCA4-206ENST00000538456 BAZ2AQ9UIF9 1905 aaKnown RBP16.98■□□□□ 0.31
SMARCA4-206ENST00000538456 FLOT1O75955 427 aa16.98■□□□□ 0.31
SMARCA4-206ENST00000538456 CYP2D6P10635 497 aa16.98■□□□□ 0.31
SMARCA4-206ENST00000538456 PDE6AP16499 860 aa16.98■□□□□ 0.31
SMARCA4-206ENST00000538456 SLC9C2Q5TAH2 1124 aa16.98■□□□□ 0.31
SMARCA4-206ENST00000538456 SH3RF1Q7Z6J0 888 aa16.98■□□□□ 0.31
SMARCA4-206ENST00000538456 SHCBP1Q8NEM2 672 aa16.98■□□□□ 0.31
SMARCA4-206ENST00000538456 MAFAQ8NHW3 353 aaPredicted RBP16.98■□□□□ 0.31
SMARCA4-206ENST00000538456 SDR42E1Q8WUS8 393 aa16.98■□□□□ 0.31
SMARCA4-206ENST00000538456 SLC5A4Q9NY91 659 aa16.98■□□□□ 0.31
SMARCA4-206ENST00000538456 PLXNA1Q9UIW2 1896 aa16.97■□□□□ 0.31
SMARCA4-206ENST00000538456 TRIM43BA6NCK2 446 aa16.97■□□□□ 0.31
SMARCA4-206ENST00000538456 RLBP1P12271 317 aa16.97■□□□□ 0.31
SMARCA4-206ENST00000538456 SNX17Q15036 470 aa16.97■□□□□ 0.31
SMARCA4-206ENST00000538456 LRRC41Q15345 812 aa16.97■□□□□ 0.31
SMARCA4-206ENST00000538456 TMED8Q6PL24 325 aaPredicted RBP16.97■□□□□ 0.31
SMARCA4-206ENST00000538456 MB21D1Q8N884 522 aa16.97■□□□□ 0.31
SMARCA4-206ENST00000538456 MYLIPQ8WY64 445 aa16.97■□□□□ 0.31
SMARCA4-206ENST00000538456 TRIM43Q96BQ3 446 aaPredicted RBP16.97■□□□□ 0.31
SMARCA4-206ENST00000538456 ATG4CQ96DT6 458 aa16.97■□□□□ 0.31
SMARCA4-206ENST00000538456 SEMA6BQ9H3T3 888 aa16.97■□□□□ 0.31
SMARCA4-206ENST00000538456 DSG3P32926 999 aa16.96■□□□□ 0.31
SMARCA4-206ENST00000538456 TTF1Q15361 905 aaPredicted RBP16.96■□□□□ 0.31
SMARCA4-206ENST00000538456 CEP85Q6P2H3 762 aa16.96■□□□□ 0.31
SMARCA4-206ENST00000538456 TMEM179Q6ZVK1 233 aa16.96■□□□□ 0.31
SMARCA4-206ENST00000538456 ERC1Q8IUD2 1116 aa16.96■□□□□ 0.31
SMARCA4-206ENST00000538456 LCORLQ8N3X6 602 aa16.96■□□□□ 0.31
SMARCA4-206ENST00000538456 MAML3Q96JK9 1138 aa16.96■□□□□ 0.31
SMARCA4-206ENST00000538456 BCL11AQ9H165 835 aa16.96■□□□□ 0.31
SMARCA4-206ENST00000538456 TTYH1Q9H313 450 aaPredicted RBP16.96■□□□□ 0.31
SMARCA4-206ENST00000538456 MROH8Q9H579 483 aa16.96■□□□□ 0.31
SMARCA4-206ENST00000538456 IL1RAPL2Q9NP60 686 aa16.96■□□□□ 0.31
SMARCA4-206ENST00000538456 ZNF532Q9HCE3 1301 aa16.96■□□□□ 0.3
SMARCA4-206ENST00000538456 FCER1AP12319 257 aa16.95■□□□□ 0.3
SMARCA4-206ENST00000538456 TLE2Q04725 743 aa16.95■□□□□ 0.3
SMARCA4-206ENST00000538456 ICA1Q05084 483 aa16.95■□□□□ 0.3
SMARCA4-206ENST00000538456 DYNLL2Q96FJ2 89 aa16.95■□□□□ 0.3
SMARCA4-206ENST00000538456 DNAJC2Q99543 621 aaKnown RBP16.95■□□□□ 0.3
SMARCA4-206ENST00000538456 ARHGEF10LQ9HCE6 1279 aa16.95■□□□□ 0.3
SMARCA4-206ENST00000538456 DCP1AQ9NPI6 582 aaPredicted RBP16.95■□□□□ 0.3
SMARCA4-206ENST00000538456 XPNPEP3Q9NQH7 507 aa16.95■□□□□ 0.3
SMARCA4-206ENST00000538456 CCER2I3L3R5 266 aa16.94■□□□□ 0.3
SMARCA4-206ENST00000538456 APBB1O00213 710 aa16.94■□□□□ 0.3
SMARCA4-206ENST00000538456 GOLIM4O00461 696 aa16.94■□□□□ 0.3
SMARCA4-206ENST00000538456 PGK2P07205 417 aa16.94■□□□□ 0.3
SMARCA4-206ENST00000538456 AKR1B1P15121 316 aa16.94■□□□□ 0.3
SMARCA4-206ENST00000538456 FOSL2P15408 326 aa16.94■□□□□ 0.3
SMARCA4-206ENST00000538456 SMAD3P84022 425 aaKnown RBP16.94■□□□□ 0.3
SMARCA4-206ENST00000538456 ABRAQ8N0Z2 381 aa16.94■□□□□ 0.3
SMARCA4-206ENST00000538456 TCRBV5S4A2TA0A5A2 114 aa16.93■□□□□ 0.3
SMARCA4-206ENST00000538456 PGK1P00558 417 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms