RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 COL1A1P02452 1464 aaPredicted RBP8.84□□□□□ -0.99
CD44-228ENST00000528455 TMEM88BA6NKF7 163 aa8.84□□□□□ -0.99
CD44-228ENST00000528455 GRM5P41594 1212 aa8.84□□□□□ -0.99
CD44-228ENST00000528455 ARID5BQ14865 1188 aa8.84□□□□□ -0.99
CD44-228ENST00000528455 ALX1Q15699 326 aa8.84□□□□□ -0.99
CD44-228ENST00000528455 GRIK5Q16478 980 aa8.84□□□□□ -0.99
CD44-228ENST00000528455 MAP1SQ66K74 1059 aaPredicted RBP8.84□□□□□ -0.99
CD44-228ENST00000528455 VASH1Q7L8A9 365 aaPredicted RBP8.84□□□□□ -0.99
CD44-228ENST00000528455 JMYQ8N9B5 988 aa8.84□□□□□ -0.99
CD44-228ENST00000528455 ZNF592Q92610 1267 aa8.84□□□□□ -0.99
CD44-228ENST00000528455 TEKT1Q969V4 418 aa8.84□□□□□ -0.99
CD44-228ENST00000528455 AIDAQ96BJ3 306 aa8.84□□□□□ -0.99
CD44-228ENST00000528455 ZDHHC15Q96MV8 337 aa8.84□□□□□ -0.99
CD44-228ENST00000528455 SEC62Q99442 399 aaKnown RBP8.84□□□□□ -0.99
CD44-228ENST00000528455 NOL10Q9BSC4 688 aaKnown RBP8.84□□□□□ -0.99
CD44-228ENST00000528455 DSCC1Q9BVC3 393 aa8.84□□□□□ -0.99
CD44-228ENST00000528455 GPRC5DQ9NZD1 345 aa8.84□□□□□ -0.99
CD44-228ENST00000528455 HDAC9Q9UKV0 1011 aa8.84□□□□□ -0.99
CD44-228ENST00000528455 JAG2Q9Y219 1238 aa8.84□□□□□ -0.99
CD44-228ENST00000528455 RPAP1Q9BWH6 1393 aaPredicted RBP8.84□□□□□ -0.99
CD44-228ENST00000528455 PASKQ96RG2 1323 aa8.83□□□□□ -1
CD44-228ENST00000528455 A0A0D9SFI3 127 aa8.83□□□□□ -1
CD44-228ENST00000528455 ESPNB1AK53 854 aa8.83□□□□□ -1
CD44-228ENST00000528455 ALDH1A1P00352 501 aa8.83□□□□□ -1
CD44-228ENST00000528455 CHGBP05060 677 aa8.83□□□□□ -1
CD44-228ENST00000528455 GMPSP49915 693 aaPredicted RBP8.83□□□□□ -1
CD44-228ENST00000528455 SLFNL1Q499Z3 407 aa8.83□□□□□ -1
CD44-228ENST00000528455 GIMAP6Q6P9H5 292 aa8.83□□□□□ -1
CD44-228ENST00000528455 KIAA0825Q8IV33 1275 aa8.83□□□□□ -1
CD44-228ENST00000528455 CYP4X1Q8N118 509 aa8.83□□□□□ -1
CD44-228ENST00000528455 KCTD15Q96SI1 283 aaPredicted RBP8.83□□□□□ -1
CD44-228ENST00000528455 RIOK1Q9BRS2 568 aaKnown RBP8.83□□□□□ -1
CD44-228ENST00000528455 MXD3Q9BW11 206 aa8.83□□□□□ -1
CD44-228ENST00000528455 UPF2Q9HAU5 1272 aaKnown RBP8.83□□□□□ -1
CD44-228ENST00000528455 CTNNA3Q9UI47 895 aa8.83□□□□□ -1
CD44-228ENST00000528455 MROH7-TTC4A0A0A0MT08 1334 aa8.82□□□□□ -1
CD44-228ENST00000528455 GAKO14976 1311 aa8.82□□□□□ -1
CD44-228ENST00000528455 CCDC171Q6TFL3 1326 aa8.82□□□□□ -1
CD44-228ENST00000528455 ZNF646O15015 1829 aaPredicted RBP8.82□□□□□ -1
CD44-228ENST00000528455 TTC24A2A3L6 582 aaPredicted RBP8.82□□□□□ -1
CD44-228ENST00000528455 H7C1D1 291 aa8.82□□□□□ -1
CD44-228ENST00000528455 J3QL48 77 aa8.82□□□□□ -1
CD44-228ENST00000528455 M0R2C6 588 aa8.82□□□□□ -1
CD44-228ENST00000528455 GPAA1O43292 621 aa8.82□□□□□ -1
CD44-228ENST00000528455 HSPD1P10809 573 aaKnown RBP8.82□□□□□ -1
CD44-228ENST00000528455 CRKP46108 304 aa8.82□□□□□ -1
CD44-228ENST00000528455 ZNF280AP59817 542 aaPredicted RBP8.82□□□□□ -1
CD44-228ENST00000528455 NECTIN1Q15223 517 aa8.82□□□□□ -1
CD44-228ENST00000528455 NBPF20Q3BBV1 942 aa8.82□□□□□ -1
CD44-228ENST00000528455 APOBEC3HQ6NTF7 200 aaKnown RBP8.82□□□□□ -1
CD44-228ENST00000528455 ADGRA1Q86SQ6 560 aa8.82□□□□□ -1
CD44-228ENST00000528455 LSG1Q9H089 658 aaKnown RBP8.82□□□□□ -1
CD44-228ENST00000528455 ATP8A2Q9NTI2 1148 aa8.82□□□□□ -1
CD44-228ENST00000528455 CNOT7Q9UIV1 285 aaKnown RBP8.82□□□□□ -1
CD44-228ENST00000528455 ADAMTSL1Q8N6G6 1762 aa8.81□□□□□ -1
CD44-228ENST00000528455 GSG1L2A8MUP6 293 aa8.81□□□□□ -1
CD44-228ENST00000528455 F8W031 263 aaPredicted RBP8.81□□□□□ -1
CD44-228ENST00000528455 ADH1CP00326 375 aa8.81□□□□□ -1
CD44-228ENST00000528455 FGAP02671 866 aa8.81□□□□□ -1
CD44-228ENST00000528455 SMPD1P17405 629 aa8.81□□□□□ -1
CD44-228ENST00000528455 DLGAP5Q15398 846 aa8.81□□□□□ -1
CD44-228ENST00000528455 TSGA10IPQ3SY00 556 aa8.81□□□□□ -1
CD44-228ENST00000528455 FKBP1CQ5VVH2 108 aa8.81□□□□□ -1
CD44-228ENST00000528455 ZNF589Q86UQ0 364 aaPredicted RBP8.81□□□□□ -1
CD44-228ENST00000528455 IFNL3Q8IZI9 196 aa8.81□□□□□ -1
CD44-228ENST00000528455 PHTF2Q8N3S3 785 aa8.81□□□□□ -1
CD44-228ENST00000528455 MIGA1Q8NAN2 632 aa8.81□□□□□ -1
CD44-228ENST00000528455 CALR3Q96L12 384 aaKnown RBP8.81□□□□□ -1
CD44-228ENST00000528455 PRMT6Q96LA8 375 aaPredicted RBP8.81□□□□□ -1
CD44-228ENST00000528455 CRNKL1Q9BZJ0 848 aaKnown RBP8.81□□□□□ -1
CD44-228ENST00000528455 NACAP1Q9BZK3 213 aa8.81□□□□□ -1
CD44-228ENST00000528455 ARMT1Q9H993 441 aa8.81□□□□□ -1
CD44-228ENST00000528455 ANO2Q9NQ90 1003 aa8.81□□□□□ -1
CD44-228ENST00000528455 AATFQ9NY61 560 aaKnown RBP eCLIP8.81□□□□□ -1
CD44-228ENST00000528455 MKRN1Q9UHC7 482 aaKnown RBP8.81□□□□□ -1
CD44-228ENST00000528455 DAGLAQ9Y4D2 1042 aa8.81□□□□□ -1
CD44-228ENST00000528455 MBD4O95243 580 aa8.8□□□□□ -1
CD44-228ENST00000528455 APPP05067 770 aa8.8□□□□□ -1
CD44-228ENST00000528455 MCCP23508 829 aa8.8□□□□□ -1
CD44-228ENST00000528455 BTDP43251 543 aa8.8□□□□□ -1
CD44-228ENST00000528455 RBM25P49756 843 aaKnown RBP8.8□□□□□ -1
CD44-228ENST00000528455 RBM5P52756 815 aaKnown RBP eCLIP8.8□□□□□ -1
CD44-228ENST00000528455 RHBDL3P58872 404 aa8.8□□□□□ -1
CD44-228ENST00000528455 ANAPC15P60006 121 aa8.8□□□□□ -1
CD44-228ENST00000528455 DYNLL1P63167 89 aaKnown RBP8.8□□□□□ -1
CD44-228ENST00000528455 PTH1RQ03431 593 aa8.8□□□□□ -1
CD44-228ENST00000528455 DEFB115Q30KQ5 88 aa8.8□□□□□ -1
CD44-228ENST00000528455 CFAP100Q494V2 611 aa8.8□□□□□ -1
CD44-228ENST00000528455 INTS6LQ5JSJ4 861 aaKnown RBP8.8□□□□□ -1
CD44-228ENST00000528455 RNF20Q5VTR2 975 aa8.8□□□□□ -1
CD44-228ENST00000528455 KCNB2Q92953 911 aa8.8□□□□□ -1
CD44-228ENST00000528455 ZBED3Q96IU2 234 aaPredicted RBP8.8□□□□□ -1
CD44-228ENST00000528455 IDI2Q9BXS1 227 aa8.8□□□□□ -1
CD44-228ENST00000528455 IL25Q9H293 177 aa8.8□□□□□ -1
CD44-228ENST00000528455 MYOZ2Q9NPC6 264 aa8.8□□□□□ -1
CD44-228ENST00000528455 USP40Q9NVE5 1235 aa8.8□□□□□ -1
CD44-228ENST00000528455 PGAP2Q9UHJ9 254 aa8.8□□□□□ -1
CD44-228ENST00000528455 SLC4A4Q9Y6R1 1079 aa8.8□□□□□ -1
CD44-228ENST00000528455 ZMYM6O95789 1325 aa8.8□□□□□ -1
CD44-228ENST00000528455 ZNF213O14771 459 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 231.4 ms