RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 POLLQ9UGP5 575 aa3.47□□□□□ -1.85
MCF2-208ENST00000519895 SLC45A1Q9Y2W3 748 aa3.47□□□□□ -1.85
MCF2-208ENST00000519895 FRMPD3Q5JV73 1810 aa3.46□□□□□ -1.85
MCF2-208ENST00000519895 NBPF7P0C2Y1 421 aaPredicted RBP3.46□□□□□ -1.86
MCF2-208ENST00000519895 PYGBP11216 843 aa3.46□□□□□ -1.86
MCF2-208ENST00000519895 ATP5JP18859 108 aa3.46□□□□□ -1.86
MCF2-208ENST00000519895 GPTP24298 496 aa3.46□□□□□ -1.86
MCF2-208ENST00000519895 HIBADHP31937 336 aaKnown RBP3.46□□□□□ -1.86
MCF2-208ENST00000519895 G3BP1Q13283 466 aaKnown RBP eCLIP3.46□□□□□ -1.86
MCF2-208ENST00000519895 TNFAIP1Q13829 316 aa3.46□□□□□ -1.86
MCF2-208ENST00000519895 ZSCAN25Q6NSZ9 544 aa3.46□□□□□ -1.86
MCF2-208ENST00000519895 LDHAL6AQ6ZMR3 332 aa3.46□□□□□ -1.86
MCF2-208ENST00000519895 HAUS7Q99871 368 aa3.46□□□□□ -1.86
MCF2-208ENST00000519895 MTA3Q9BTC8 594 aa3.46□□□□□ -1.86
MCF2-208ENST00000519895 PRDM12Q9H4Q4 367 aa3.46□□□□□ -1.86
MCF2-208ENST00000519895 PRKAG2Q9UGJ0 569 aa3.46□□□□□ -1.86
MCF2-208ENST00000519895 LOC285556D6RIA3 1793 aa3.46□□□□□ -1.86
MCF2-208ENST00000519895 TEP1Q99973 2627 aaKnown RBP3.46□□□□□ -1.86
MCF2-208ENST00000519895 CDK5RAP2Q96SN8 1893 aa3.46□□□□□ -1.86
MCF2-208ENST00000519895 ATP5J2-PTCD1G3V325 749 aa3.46□□□□□ -1.86
MCF2-208ENST00000519895 ECE2O60344 883 aa3.46□□□□□ -1.86
MCF2-208ENST00000519895 HCLS1P14317 486 aaPredicted RBP3.46□□□□□ -1.86
MCF2-208ENST00000519895 SSTR3P32745 418 aaPredicted RBP3.46□□□□□ -1.86
MCF2-208ENST00000519895 ZNF76P36508 570 aa3.46□□□□□ -1.86
MCF2-208ENST00000519895 COL9A3Q14050 684 aaPredicted RBP3.46□□□□□ -1.86
MCF2-208ENST00000519895 MCM6Q14566 821 aa3.46□□□□□ -1.86
MCF2-208ENST00000519895 RASIP1Q5U651 963 aa3.46□□□□□ -1.86
MCF2-208ENST00000519895 CCDC174Q6PII3 467 aa3.46□□□□□ -1.86
MCF2-208ENST00000519895 FRMD5Q7Z6J6 570 aa3.46□□□□□ -1.86
MCF2-208ENST00000519895 NUTM1Q86Y26 1132 aa3.46□□□□□ -1.86
MCF2-208ENST00000519895 RAET1EQ8TD07 263 aa3.46□□□□□ -1.86
MCF2-208ENST00000519895 IL17RAQ96F46 866 aa3.46□□□□□ -1.86
MCF2-208ENST00000519895 FAM84BQ96KN1 310 aaPredicted RBP3.46□□□□□ -1.86
MCF2-208ENST00000519895 EHD4Q9H223 541 aa3.46□□□□□ -1.86
MCF2-208ENST00000519895 RWDD1Q9H446 243 aaPredicted RBP3.46□□□□□ -1.86
MCF2-208ENST00000519895 FANCMQ8IYD8 2048 aa3.46□□□□□ -1.86
MCF2-208ENST00000519895 ROBO3Q96MS0 1386 aa3.46□□□□□ -1.86
MCF2-208ENST00000519895 GRXCR2A6NFK2 248 aa3.45□□□□□ -1.86
MCF2-208ENST00000519895 HIP1O00291 1037 aa3.45□□□□□ -1.86
MCF2-208ENST00000519895 PPIP5K2O43314 1243 aa3.45□□□□□ -1.86
MCF2-208ENST00000519895 ANXA1P04083 346 aa3.45□□□□□ -1.86
MCF2-208ENST00000519895 GMPSP49915 693 aaPredicted RBP3.45□□□□□ -1.86
MCF2-208ENST00000519895 ARMC9Q7Z3E5 817 aa3.45□□□□□ -1.86
MCF2-208ENST00000519895 ADHFE1Q8IWW8 467 aa3.45□□□□□ -1.86
MCF2-208ENST00000519895 GPATCH3Q96I76 525 aa3.45□□□□□ -1.86
MCF2-208ENST00000519895 ZNF112Q9UJU3 913 aa3.45□□□□□ -1.86
MCF2-208ENST00000519895 LRRFIP2Q9Y608 721 aaKnown RBP3.45□□□□□ -1.86
MCF2-208ENST00000519895 RAD50Q92878 1312 aa3.45□□□□□ -1.86
MCF2-208ENST00000519895 ZSWIM8A7E2V4 1837 aa3.45□□□□□ -1.86
MCF2-208ENST00000519895 COL11A1P12107 1806 aaPredicted RBP3.45□□□□□ -1.86
MCF2-208ENST00000519895 ZNF236Q9UL36 1845 aa3.45□□□□□ -1.86
MCF2-208ENST00000519895 GPR75-ASB3A0A0A6YYF3 556 aa3.45□□□□□ -1.86
MCF2-208ENST00000519895 NPHP1O15259 732 aa3.45□□□□□ -1.86
MCF2-208ENST00000519895 BCAR3O75815 825 aa3.45□□□□□ -1.86
MCF2-208ENST00000519895 UFL1O94874 794 aa3.45□□□□□ -1.86
MCF2-208ENST00000519895 CXCL9Q07325 125 aa3.45□□□□□ -1.86
MCF2-208ENST00000519895 KCNA1Q09470 495 aa3.45□□□□□ -1.86
MCF2-208ENST00000519895 UBE3CQ15386 1083 aa3.45□□□□□ -1.86
MCF2-208ENST00000519895 ALX1Q15699 326 aa3.45□□□□□ -1.86
MCF2-208ENST00000519895 ATP2B3Q16720 1220 aa3.45□□□□□ -1.86
MCF2-208ENST00000519895 TNNI3KQ59H18 835 aa3.45□□□□□ -1.86
MCF2-208ENST00000519895 C9orf50Q5SZB4 431 aa3.45□□□□□ -1.86
MCF2-208ENST00000519895 RASEFQ8IZ41 740 aa3.45□□□□□ -1.86
MCF2-208ENST00000519895 LARGE2Q8N3Y3 721 aa3.45□□□□□ -1.86
MCF2-208ENST00000519895 GTF3C2Q8WUA4 911 aaPredicted RBP3.45□□□□□ -1.86
MCF2-208ENST00000519895 RUBCNQ92622 972 aa3.45□□□□□ -1.86
MCF2-208ENST00000519895 RNPC3Q96LT9 517 aaKnown RBP3.45□□□□□ -1.86
MCF2-208ENST00000519895 MEIS3Q99687 375 aa3.45□□□□□ -1.86
MCF2-208ENST00000519895 FPGT-TNNI3KV9GXZ4 949 aa3.45□□□□□ -1.86
MCF2-208ENST00000519895 FAM186AA6NE01 2351 aa3.45□□□□□ -1.86
MCF2-208ENST00000519895 DOCK1Q14185 1865 aa3.45□□□□□ -1.86
MCF2-208ENST00000519895 YDJCA8MPS7 323 aa3.45□□□□□ -1.86
MCF2-208ENST00000519895 F6X3S4 739 aa3.45□□□□□ -1.86
MCF2-208ENST00000519895 GPR37O15354 613 aa3.45□□□□□ -1.86
MCF2-208ENST00000519895 GNAT2P19087 354 aa3.45□□□□□ -1.86
MCF2-208ENST00000519895 RRP1BQ14684 758 aaKnown RBP3.45□□□□□ -1.86
MCF2-208ENST00000519895 CCDC85BQ15834 202 aaPredicted RBP3.45□□□□□ -1.86
MCF2-208ENST00000519895 RCSD1Q6JBY9 416 aa3.45□□□□□ -1.86
MCF2-208ENST00000519895 DHX36Q9H2U1 1008 aaKnown RBP3.45□□□□□ -1.86
MCF2-208ENST00000519895 CNNM1Q9NRU3 951 aa3.45□□□□□ -1.86
MCF2-208ENST00000519895 PLA2G2EQ9NZK7 142 aa3.45□□□□□ -1.86
MCF2-208ENST00000519895 HCSTQ9UBK5 93 aa3.45□□□□□ -1.86
MCF2-208ENST00000519895 MTCH2Q9Y6C9 303 aa3.45□□□□□ -1.86
MCF2-208ENST00000519895 MYO18BQ8IUG5 2567 aa3.45□□□□□ -1.86
MCF2-208ENST00000519895 PLIN4Q96Q06 1357 aa3.45□□□□□ -1.86
MCF2-208ENST00000519895 TSC2P49815 1807 aa3.45□□□□□ -1.86
MCF2-208ENST00000519895 NAV1Q8NEY1 1877 aa3.44□□□□□ -1.86
MCF2-208ENST00000519895 ELL2O00472 640 aaPredicted RBP3.44□□□□□ -1.86
MCF2-208ENST00000519895 GP1BBP13224 206 aa3.44□□□□□ -1.86
MCF2-208ENST00000519895 TNNI2P48788 182 aa3.44□□□□□ -1.86
MCF2-208ENST00000519895 ZP2Q05996 745 aa3.44□□□□□ -1.86
MCF2-208ENST00000519895 SIGLEC14Q08ET2 396 aa3.44□□□□□ -1.86
MCF2-208ENST00000519895 TAF7LQ5H9L4 462 aa3.44□□□□□ -1.86
MCF2-208ENST00000519895 METTL24Q5JXM2 366 aa3.44□□□□□ -1.86
MCF2-208ENST00000519895 CCDC158Q5M9N0 1113 aa3.44□□□□□ -1.86
MCF2-208ENST00000519895 FAM43BQ6ZT52 329 aaPredicted RBP3.44□□□□□ -1.86
MCF2-208ENST00000519895 ZFPM1Q8IX07 1006 aa3.44□□□□□ -1.86
MCF2-208ENST00000519895 WNK4Q96J92 1243 aa3.44□□□□□ -1.86
MCF2-208ENST00000519895 UBL7Q96S82 380 aaPredicted RBP3.44□□□□□ -1.86
MCF2-208ENST00000519895 SEC31BQ9NQW1 1179 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms