RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 RELTQ969Z4 430 aa5.59□□□□□ -1.51
NUP54-208ENST00000508604 PARD6AQ9NPB6 346 aa5.59□□□□□ -1.51
NUP54-208ENST00000508604 GPR160Q9UJ42 338 aa5.59□□□□□ -1.51
NUP54-208ENST00000508604 YBX2Q9Y2T7 364 aaKnown RBP5.59□□□□□ -1.51
NUP54-208ENST00000508604 AK5Q9Y6K8 562 aa5.59□□□□□ -1.51
NUP54-208ENST00000508604 PRPF40AO75400 957 aaKnown RBP5.59□□□□□ -1.52
NUP54-208ENST00000508604 BMP7P18075 431 aa5.59□□□□□ -1.52
NUP54-208ENST00000508604 TCERG1LQ5VWI1 586 aa5.59□□□□□ -1.52
NUP54-208ENST00000508604 TMEM151BQ8IW70 566 aa5.59□□□□□ -1.52
NUP54-208ENST00000508604 ANKS4BQ8N8V4 417 aa5.59□□□□□ -1.52
NUP54-208ENST00000508604 RNF141Q8WVD5 230 aa5.59□□□□□ -1.52
NUP54-208ENST00000508604 ASCC2Q9H1I8 757 aaPredicted RBP5.59□□□□□ -1.52
NUP54-208ENST00000508604 PCDHA11Q9Y5I1 949 aa5.59□□□□□ -1.52
NUP54-208ENST00000508604 IVNS1ABPQ9Y6Y0 642 aa5.59□□□□□ -1.52
NUP54-208ENST00000508604 TEX51A0A1B0GUA7 166 aa5.58□□□□□ -1.52
NUP54-208ENST00000508604 LCE5AQ5TCM9 118 aa5.58□□□□□ -1.52
NUP54-208ENST00000508604 ZNF552Q9H707 407 aaPredicted RBP5.58□□□□□ -1.52
NUP54-208ENST00000508604 TFE3P19532 575 aaPredicted RBP5.57□□□□□ -1.52
NUP54-208ENST00000508604 PPP1R13LQ8WUF5 828 aa5.57□□□□□ -1.52
NUP54-208ENST00000508604 KCNA1Q09470 495 aa5.56□□□□□ -1.52
NUP54-208ENST00000508604 ASPNQ9BXN1 380 aa5.56□□□□□ -1.52
NUP54-208ENST00000508604 SP110Q9HB58 689 aa5.56□□□□□ -1.52
NUP54-208ENST00000508604 KCTD3Q9Y597 815 aa5.56□□□□□ -1.52
NUP54-208ENST00000508604 OR14I1A6ND48 311 aa5.56□□□□□ -1.52
NUP54-208ENST00000508604 TIGD5Q53EQ6 642 aa5.56□□□□□ -1.52
NUP54-208ENST00000508604 CCDC84Q86UT8 332 aaPredicted RBP5.56□□□□□ -1.52
NUP54-208ENST00000508604 CCDC74BQ96LY2 380 aa5.56□□□□□ -1.52
NUP54-208ENST00000508604 MYOCOSA0A1B0GUC4 107 aa5.55□□□□□ -1.52
NUP54-208ENST00000508604 UPK3BL1B0FP48 263 aa5.55□□□□□ -1.52
NUP54-208ENST00000508604 UPK3BL2E5RIL1 263 aa5.55□□□□□ -1.52
NUP54-208ENST00000508604 SUPT5HO00267 1087 aaKnown RBP5.55□□□□□ -1.52
NUP54-208ENST00000508604 TMEM201Q5SNT2 666 aa5.55□□□□□ -1.52
NUP54-208ENST00000508604 SLFN12Q8IYM2 578 aa5.55□□□□□ -1.52
NUP54-208ENST00000508604 NOC4LQ9BVI4 516 aaKnown RBP5.55□□□□□ -1.52
NUP54-208ENST00000508604 CORINQ9Y5Q5 1042 aa5.55□□□□□ -1.52
NUP54-208ENST00000508604 SSU72P8A0A1W2PR75 194 aa5.54□□□□□ -1.52
NUP54-208ENST00000508604 TAF1CQ15572 869 aaPredicted RBP5.54□□□□□ -1.52
NUP54-208ENST00000508604 SLC14A2Q15849 920 aa5.54□□□□□ -1.52
NUP54-208ENST00000508604 ERICH6BQ5W0A0 696 aa5.54□□□□□ -1.52
NUP54-208ENST00000508604 PHACTR4Q8IZ21 702 aa5.54□□□□□ -1.52
NUP54-208ENST00000508604 C20orf173Q96LM9 149 aa5.54□□□□□ -1.52
NUP54-208ENST00000508604 KREMEN1Q96MU8 473 aa5.54□□□□□ -1.52
NUP54-208ENST00000508604 DUSP9Q99956 384 aaKnown RBP5.54□□□□□ -1.52
NUP54-208ENST00000508604 KRTAP4-5Q9BYR2 181 aa5.54□□□□□ -1.52
NUP54-208ENST00000508604 SIRT5Q9NXA8 310 aa5.54□□□□□ -1.52
NUP54-208ENST00000508604 ZMYM5Q9UJ78 669 aa5.54□□□□□ -1.52
NUP54-208ENST00000508604 TLR6Q9Y2C9 796 aa5.54□□□□□ -1.52
NUP54-208ENST00000508604 RBM47A0AV96 593 aaKnown RBP5.53□□□□□ -1.52
NUP54-208ENST00000508604 LRRN2O75325 713 aa5.53□□□□□ -1.52
NUP54-208ENST00000508604 SASH1O94885 1247 aa5.53□□□□□ -1.52
NUP54-208ENST00000508604 EAPPQ56P03 285 aaPredicted RBP5.53□□□□□ -1.52
NUP54-208ENST00000508604 ADGRF1Q5T601 910 aa5.53□□□□□ -1.52
NUP54-208ENST00000508604 OLFML2BQ68BL8 750 aa5.53□□□□□ -1.52
NUP54-208ENST00000508604 ENOX1Q8TC92 643 aaKnown RBP5.53□□□□□ -1.52
NUP54-208ENST00000508604 SGPP1Q9BX95 441 aa5.53□□□□□ -1.52
NUP54-208ENST00000508604 KLHL3Q9UH77 587 aa5.53□□□□□ -1.52
NUP54-208ENST00000508604 IRAK3Q9Y616 596 aa5.53□□□□□ -1.52
NUP54-208ENST00000508604 PATL2C9JE40 543 aaKnown RBP5.53□□□□□ -1.52
NUP54-208ENST00000508604 RBAK-RBAKDNI3L0D1 243 aa5.53□□□□□ -1.52
NUP54-208ENST00000508604 PSPNO60542 156 aa5.53□□□□□ -1.52
NUP54-208ENST00000508604 FOXD2O60548 495 aaPredicted RBP5.53□□□□□ -1.52
NUP54-208ENST00000508604 SYN1P17600 705 aa5.53□□□□□ -1.52
NUP54-208ENST00000508604 RPL10P27635 214 aaKnown RBP5.53□□□□□ -1.52
NUP54-208ENST00000508604 GBP1P32455 592 aa5.53□□□□□ -1.52
NUP54-208ENST00000508604 ST13P50502 369 aaKnown RBP5.53□□□□□ -1.52
NUP54-208ENST00000508604 SRSF3P84103 164 aaKnown RBP5.53□□□□□ -1.52
NUP54-208ENST00000508604 TEKQ02763 1124 aa5.53□□□□□ -1.52
NUP54-208ENST00000508604 MLECQ14165 292 aa5.53□□□□□ -1.52
NUP54-208ENST00000508604 NFIXQ14938 502 aa5.53□□□□□ -1.52
NUP54-208ENST00000508604 MEI1Q5TIA1 1274 aa5.53□□□□□ -1.52
NUP54-208ENST00000508604 RNF111Q6ZNA4 994 aa5.52□□□□□ -1.53
NUP54-208ENST00000508604 SIRT2Q8IXJ6 389 aa5.52□□□□□ -1.53
NUP54-208ENST00000508604 MARCH10Q8NA82 808 aaPredicted RBP5.52□□□□□ -1.53
NUP54-208ENST00000508604 PHC3Q8NDX5 983 aa5.52□□□□□ -1.53
NUP54-208ENST00000508604 SIGLEC10Q96LC7 697 aa5.52□□□□□ -1.53
NUP54-208ENST00000508604 GCM1Q9NP62 436 aa5.52□□□□□ -1.53
NUP54-208ENST00000508604 REV1Q9UBZ9 1251 aa5.52□□□□□ -1.53
NUP54-208ENST00000508604 HRKO00198 91 aa5.51□□□□□ -1.53
NUP54-208ENST00000508604 CILPO75339 1184 aa5.51□□□□□ -1.53
NUP54-208ENST00000508604 PSMD2Q13200 908 aa5.51□□□□□ -1.53
NUP54-208ENST00000508604 WAPLQ7Z5K2 1190 aa5.51□□□□□ -1.53
NUP54-208ENST00000508604 GATAD2BQ8WXI9 593 aa5.51□□□□□ -1.53
NUP54-208ENST00000508604 LINC01599Q8WXQ3 324 aa5.51□□□□□ -1.53
NUP54-208ENST00000508604 KCNC2Q96PR1 638 aa5.51□□□□□ -1.53
NUP54-208ENST00000508604 CRTAC1Q9NQ79 661 aa5.51□□□□□ -1.53
NUP54-208ENST00000508604 PCBP3P57721 371 aaKnown RBP5.5□□□□□ -1.53
NUP54-208ENST00000508604 RNF4P78317 190 aa5.5□□□□□ -1.53
NUP54-208ENST00000508604 XPCQ01831 940 aaPredicted RBP5.5□□□□□ -1.53
NUP54-208ENST00000508604 LMNB2Q03252 620 aa5.5□□□□□ -1.53
NUP54-208ENST00000508604 NMIQ13287 307 aaPredicted RBP5.5□□□□□ -1.53
NUP54-208ENST00000508604 CAMK2GQ13555 558 aaPredicted RBP5.5□□□□□ -1.53
NUP54-208ENST00000508604 BNC2Q6ZN30 1099 aaPredicted RBP5.5□□□□□ -1.53
NUP54-208ENST00000508604 RELL1Q8IUW5 271 aa5.5□□□□□ -1.53
NUP54-208ENST00000508604 SHISA3A0PJX4 238 aa5.5□□□□□ -1.53
NUP54-208ENST00000508604 CHURC1-FNTBB4DL54 471 aa5.5□□□□□ -1.53
NUP54-208ENST00000508604 ABLIM1O14639 778 aa5.5□□□□□ -1.53
NUP54-208ENST00000508604 PI3P19957 117 aa5.5□□□□□ -1.53
NUP54-208ENST00000508604 KIR2DL1P43626 348 aaPredicted RBP5.5□□□□□ -1.53
NUP54-208ENST00000508604 KIR2DL2P43627 348 aaPredicted RBP5.5□□□□□ -1.53
NUP54-208ENST00000508604 GALK1P51570 392 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 94 ms