RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 COL9A2Q14055 689 aaPredicted RBP3.52□□□□□ -1.85
HMGB1-208ENST00000490788 LDLRAD1Q5T700 205 aa3.52□□□□□ -1.85
HMGB1-208ENST00000490788 OGFOD2Q6N063 350 aa3.52□□□□□ -1.85
HMGB1-208ENST00000490788 ZNF574Q6ZN55 896 aaPredicted RBP3.52□□□□□ -1.85
HMGB1-208ENST00000490788 CBLL1Q75N03 491 aa3.52□□□□□ -1.85
HMGB1-208ENST00000490788 FAM214BQ7L5A3 538 aa3.52□□□□□ -1.85
HMGB1-208ENST00000490788 NLRC3Q7RTR2 1065 aa3.52□□□□□ -1.85
HMGB1-208ENST00000490788 VPS37DQ86XT2 251 aa3.52□□□□□ -1.85
HMGB1-208ENST00000490788 SLITRK4Q8IW52 837 aa3.52□□□□□ -1.85
HMGB1-208ENST00000490788 SPACA3Q8IXA5 215 aa3.52□□□□□ -1.85
HMGB1-208ENST00000490788 ABI1Q8IZP0 508 aa3.52□□□□□ -1.85
HMGB1-208ENST00000490788 BAHD1Q8TBE0 780 aaPredicted RBP3.52□□□□□ -1.85
HMGB1-208ENST00000490788 PIWIL2Q8TC59 973 aaKnown RBP3.52□□□□□ -1.85
HMGB1-208ENST00000490788 RNF141Q8WVD5 230 aa3.52□□□□□ -1.85
HMGB1-208ENST00000490788 CPLX3Q8WVH0 158 aa3.52□□□□□ -1.85
HMGB1-208ENST00000490788 UBE2FQ969M7 185 aa3.52□□□□□ -1.85
HMGB1-208ENST00000490788 EAF1Q96JC9 268 aaPredicted RBP3.52□□□□□ -1.85
HMGB1-208ENST00000490788 HSPA12BQ96MM6 686 aa3.52□□□□□ -1.85
HMGB1-208ENST00000490788 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP3.52□□□□□ -1.85
HMGB1-208ENST00000490788 TNKS2Q9H2K2 1166 aa3.52□□□□□ -1.85
HMGB1-208ENST00000490788 EHMT1Q9H9B1 1298 aa3.52□□□□□ -1.85
HMGB1-208ENST00000490788 GPATCH2Q9NW75 528 aa3.52□□□□□ -1.85
HMGB1-208ENST00000490788 KIAA1522Q9P206 1035 aaPredicted RBP3.52□□□□□ -1.85
HMGB1-208ENST00000490788 ZSWIM5Q9P217 1185 aa3.52□□□□□ -1.85
HMGB1-208ENST00000490788 PLAGL2Q9UPG8 496 aa3.52□□□□□ -1.85
HMGB1-208ENST00000490788 INPP5FQ9Y2H2 1132 aa3.52□□□□□ -1.85
HMGB1-208ENST00000490788 CAPN6Q9Y6Q1 641 aa3.52□□□□□ -1.85
HMGB1-208ENST00000490788 NCANO14594 1321 aa3.51□□□□□ -1.85
HMGB1-208ENST00000490788 SLC22A31A6NKX4 558 aa3.51□□□□□ -1.85
HMGB1-208ENST00000490788 PRR33A8MZF0 331 aa3.51□□□□□ -1.85
HMGB1-208ENST00000490788 BIN1O00499 593 aa3.51□□□□□ -1.85
HMGB1-208ENST00000490788 RGS13O14921 159 aa3.51□□□□□ -1.85
HMGB1-208ENST00000490788 CLEC3AO75596 197 aa3.51□□□□□ -1.85
HMGB1-208ENST00000490788 C8AP07357 584 aa3.51□□□□□ -1.85
HMGB1-208ENST00000490788 CD8BP10966 210 aa3.51□□□□□ -1.85
HMGB1-208ENST00000490788 TCF3P15923 654 aa3.51□□□□□ -1.85
HMGB1-208ENST00000490788 CCNFP41002 786 aa3.51□□□□□ -1.85
HMGB1-208ENST00000490788 RACK1P63244 317 aaKnown RBP3.51□□□□□ -1.85
HMGB1-208ENST00000490788 PAK2Q13177 524 aa3.51□□□□□ -1.85
HMGB1-208ENST00000490788 NKPD1Q17RQ9 610 aa3.51□□□□□ -1.85
HMGB1-208ENST00000490788 OVOS1Q6IE37 1185 aa3.51□□□□□ -1.85
HMGB1-208ENST00000490788 THAP5Q7Z6K1 395 aa3.51□□□□□ -1.85
HMGB1-208ENST00000490788 DNAJB8Q8NHS0 232 aa3.51□□□□□ -1.85
HMGB1-208ENST00000490788 TMEM40Q8WWA1 233 aa3.51□□□□□ -1.85
HMGB1-208ENST00000490788 GPRASP2Q96D09 838 aa3.51□□□□□ -1.85
HMGB1-208ENST00000490788 CCDC120Q96HB5 630 aa3.51□□□□□ -1.85
HMGB1-208ENST00000490788 DHRS1Q96LJ7 313 aa3.51□□□□□ -1.85
HMGB1-208ENST00000490788 KREMEN1Q96MU8 473 aa3.51□□□□□ -1.85
HMGB1-208ENST00000490788 ASPNQ9BXN1 380 aa3.51□□□□□ -1.85
HMGB1-208ENST00000490788 TGIF2Q9GZN2 237 aa3.51□□□□□ -1.85
HMGB1-208ENST00000490788 PAK6Q9NQU5 681 aaPredicted RBP3.51□□□□□ -1.85
HMGB1-208ENST00000490788 U3KQE9 123 aa3.51□□□□□ -1.85
HMGB1-208ENST00000490788 PITPNM2Q9BZ72 1349 aa3.5□□□□□ -1.85
HMGB1-208ENST00000490788 SSU72P8A0A1W2PR75 194 aa3.5□□□□□ -1.85
HMGB1-208ENST00000490788 ITGB5P18084 799 aa3.5□□□□□ -1.85
HMGB1-208ENST00000490788 FUT4P22083 530 aa3.5□□□□□ -1.85
HMGB1-208ENST00000490788 CD96P40200 585 aa3.5□□□□□ -1.85
HMGB1-208ENST00000490788 TNK2Q07912 1038 aa3.5□□□□□ -1.85
HMGB1-208ENST00000490788 ZNF792Q3KQV3 632 aa3.5□□□□□ -1.85
HMGB1-208ENST00000490788 CDCP2Q5VXM1 449 aa3.5□□□□□ -1.85
HMGB1-208ENST00000490788 SLC23A3Q6PIS1 610 aa3.5□□□□□ -1.85
HMGB1-208ENST00000490788 SPOCD1Q6ZMY3 1216 aa3.5□□□□□ -1.85
HMGB1-208ENST00000490788 TMPRSS7Q7RTY8 843 aa3.5□□□□□ -1.85
HMGB1-208ENST00000490788 SPRED2Q7Z698 418 aa3.5□□□□□ -1.85
HMGB1-208ENST00000490788 METTL16Q86W50 562 aaKnown RBP3.5□□□□□ -1.85
HMGB1-208ENST00000490788 ATG4CQ96DT6 458 aa3.5□□□□□ -1.85
HMGB1-208ENST00000490788 MKRN2Q9H000 416 aaKnown RBP3.5□□□□□ -1.85
HMGB1-208ENST00000490788 CNNM2Q9H8M5 875 aa3.5□□□□□ -1.85
HMGB1-208ENST00000490788 RC3H2Q9HBD1 1191 aaKnown RBP3.5□□□□□ -1.85
HMGB1-208ENST00000490788 CAPN10Q9HC96 672 aa3.5□□□□□ -1.85
HMGB1-208ENST00000490788 ATP13A1Q9HD20 1204 aa3.5□□□□□ -1.85
HMGB1-208ENST00000490788 LMCD1Q9NZU5 365 aa3.5□□□□□ -1.85
HMGB1-208ENST00000490788 ZNRF3Q9ULT6 936 aa3.5□□□□□ -1.85
HMGB1-208ENST00000490788 EFR3BQ9Y2G0 817 aa3.5□□□□□ -1.85
HMGB1-208ENST00000490788 ARHGEF11O15085 1522 aa3.49□□□□□ -1.85
HMGB1-208ENST00000490788 FAM86C2PA6NEL3 165 aa3.49□□□□□ -1.85
HMGB1-208ENST00000490788 PRRG2O14669 202 aa3.49□□□□□ -1.85
HMGB1-208ENST00000490788 DNAJA2O60884 412 aa3.49□□□□□ -1.85
HMGB1-208ENST00000490788 NME1P15531 152 aaKnown RBP3.49□□□□□ -1.85
HMGB1-208ENST00000490788 TPP2P29144 1249 aaPredicted RBP3.49□□□□□ -1.85
HMGB1-208ENST00000490788 LTKP29376 864 aa3.49□□□□□ -1.85
HMGB1-208ENST00000490788 EIF6P56537 245 aaKnown RBP3.49□□□□□ -1.85
HMGB1-208ENST00000490788 CREG2Q8IUH2 290 aa3.49□□□□□ -1.85
HMGB1-208ENST00000490788 DTWD2Q8NBA8 298 aa3.49□□□□□ -1.85
HMGB1-208ENST00000490788 PPP1R13LQ8WUF5 828 aa3.49□□□□□ -1.85
HMGB1-208ENST00000490788 ZNF428Q96B54 188 aa3.49□□□□□ -1.85
HMGB1-208ENST00000490788 TM9SF2Q99805 663 aa3.49□□□□□ -1.85
HMGB1-208ENST00000490788 CARS2Q9HA77 564 aaKnown RBP3.49□□□□□ -1.85
HMGB1-208ENST00000490788 DUSP13Q9UII6 198 aa3.49□□□□□ -1.85
HMGB1-208ENST00000490788 FBXL21Q9UKT6 434 aa3.49□□□□□ -1.85
HMGB1-208ENST00000490788 PPT2Q9UMR5 302 aa3.49□□□□□ -1.85
HMGB1-208ENST00000490788 ST14Q9Y5Y6 855 aa3.49□□□□□ -1.85
HMGB1-208ENST00000490788 CNTNAP4Q9C0A0 1308 aa3.48□□□□□ -1.85
HMGB1-208ENST00000490788 MEIS3P2A8K0S8 358 aa3.48□□□□□ -1.85
HMGB1-208ENST00000490788 RAC2P15153 192 aa3.48□□□□□ -1.85
HMGB1-208ENST00000490788 POLR2BP30876 1174 aaKnown RBP3.48□□□□□ -1.85
HMGB1-208ENST00000490788 NASPP49321 788 aaPredicted RBP3.48□□□□□ -1.85
HMGB1-208ENST00000490788 BBS9Q3SYG4 887 aa3.48□□□□□ -1.85
HMGB1-208ENST00000490788 INTS3Q68E01 1043 aaKnown RBP3.48□□□□□ -1.85
HMGB1-208ENST00000490788 CCDC81Q6ZN84 652 aa3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms