RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-210ENST00000485247 CD33P20138 364 aa7.04□□□□□ -1.28
PTPN4-210ENST00000485247 IRS1P35568 1242 aa7.04□□□□□ -1.28
PTPN4-210ENST00000485247 PSMA6P60900 246 aaKnown RBP7.04□□□□□ -1.28
PTPN4-210ENST00000485247 PTK7Q13308 1070 aa7.04□□□□□ -1.28
PTPN4-210ENST00000485247 TAF7Q15545 349 aaPredicted RBP7.04□□□□□ -1.28
PTPN4-210ENST00000485247 NLRP10Q86W26 655 aa7.04□□□□□ -1.28
PTPN4-210ENST00000485247 ARHGAP39Q9C0H5 1083 aa7.04□□□□□ -1.28
PTPN4-210ENST00000485247 ENAMQ9NRM1 1142 aa7.04□□□□□ -1.28
PTPN4-210ENST00000485247 ZNF232Q9UNY5 417 aa7.04□□□□□ -1.28
PTPN4-210ENST00000485247 ANKRD36CQ5JPF3 1778 aa7.04□□□□□ -1.28
PTPN4-210ENST00000485247 KDM3BQ7LBC6 1761 aa7.04□□□□□ -1.28
PTPN4-210ENST00000485247 LRRC37AA6NMS7 1700 aa7.04□□□□□ -1.28
PTPN4-210ENST00000485247 DDX60Q8IY21 1712 aaKnown RBP7.04□□□□□ -1.28
PTPN4-210ENST00000485247 CNTNAP5Q8WYK1 1306 aa7.03□□□□□ -1.28
PTPN4-210ENST00000485247 KHNYNO15037 678 aaKnown RBP7.03□□□□□ -1.28
PTPN4-210ENST00000485247 SAMD5Q5TGI4 173 aa7.03□□□□□ -1.28
PTPN4-210ENST00000485247 UBE2Q1Q7Z7E8 422 aa7.03□□□□□ -1.28
PTPN4-210ENST00000485247 NEDD1Q8NHV4 660 aa7.03□□□□□ -1.28
PTPN4-210ENST00000485247 MXD3Q9BW11 206 aa7.03□□□□□ -1.28
PTPN4-210ENST00000485247 ANKIB1Q9P2G1 1089 aa7.03□□□□□ -1.28
PTPN4-210ENST00000485247 GGA1Q9UJY5 639 aa7.03□□□□□ -1.28
PTPN4-210ENST00000485247 LAMB4A4D0S4 1761 aa7.03□□□□□ -1.28
PTPN4-210ENST00000485247 USP17L15C9J2P7 530 aa7.02□□□□□ -1.29
PTPN4-210ENST00000485247 USP17L10C9JJH3 530 aa7.02□□□□□ -1.29
PTPN4-210ENST00000485247 USP17L13C9JLJ4 530 aa7.02□□□□□ -1.29
PTPN4-210ENST00000485247 USP17L12C9JPN9 530 aa7.02□□□□□ -1.29
PTPN4-210ENST00000485247 USP17L11C9JVI0 530 aa7.02□□□□□ -1.29
PTPN4-210ENST00000485247 USP17L21D6R901 530 aa7.02□□□□□ -1.29
PTPN4-210ENST00000485247 USP17L18D6R9N7 530 aa7.02□□□□□ -1.29
PTPN4-210ENST00000485247 USP17L22D6RA61 530 aa7.02□□□□□ -1.29
PTPN4-210ENST00000485247 USP17L17D6RBQ6 530 aa7.02□□□□□ -1.29
PTPN4-210ENST00000485247 USP17L19D6RCP7 530 aa7.02□□□□□ -1.29
PTPN4-210ENST00000485247 USP17L20D6RJB6 530 aa7.02□□□□□ -1.29
PTPN4-210ENST00000485247 EFSO43281 561 aa7.02□□□□□ -1.29
PTPN4-210ENST00000485247 LGR5O75473 907 aa7.02□□□□□ -1.29
PTPN4-210ENST00000485247 GDF11O95390 407 aa7.02□□□□□ -1.29
PTPN4-210ENST00000485247 ANXA1P04083 346 aa7.02□□□□□ -1.29
PTPN4-210ENST00000485247 GJA8P48165 433 aa7.02□□□□□ -1.29
PTPN4-210ENST00000485247 EIF4A1P60842 406 aaKnown RBP7.02□□□□□ -1.29
PTPN4-210ENST00000485247 RPS8P62241 208 aaKnown RBP7.02□□□□□ -1.29
PTPN4-210ENST00000485247 USP17L24Q0WX57 530 aa7.02□□□□□ -1.29
PTPN4-210ENST00000485247 CNGB1Q14028 1251 aaPredicted RBP7.02□□□□□ -1.29
PTPN4-210ENST00000485247 TAF1CQ15572 869 aaPredicted RBP7.02□□□□□ -1.29
PTPN4-210ENST00000485247 CC2D1BQ5T0F9 858 aaKnown RBP7.02□□□□□ -1.29
PTPN4-210ENST00000485247 LRRC69Q6ZNQ3 347 aa7.02□□□□□ -1.29
PTPN4-210ENST00000485247 SLCO4C1Q6ZQN7 724 aa7.02□□□□□ -1.29
PTPN4-210ENST00000485247 APOBEC3FQ8IUX4 373 aaKnown RBP7.02□□□□□ -1.29
PTPN4-210ENST00000485247 GOLGA6L1Q8N7Z2 621 aa7.02□□□□□ -1.29
PTPN4-210ENST00000485247 GALNT6Q8NCL4 622 aa7.02□□□□□ -1.29
PTPN4-210ENST00000485247 SCARF2Q96GP6 870 aaPredicted RBP7.02□□□□□ -1.29
PTPN4-210ENST00000485247 RAPGEFL1Q9UHV5 662 aa7.02□□□□□ -1.29
PTPN4-210ENST00000485247 KLF15Q9UIH9 416 aa7.02□□□□□ -1.29
PTPN4-210ENST00000485247 GDF2Q9UK05 429 aaPredicted RBP7.02□□□□□ -1.29
PTPN4-210ENST00000485247 COL4A1P02462 1669 aa7.02□□□□□ -1.29
PTPN4-210ENST00000485247 UNC80Q8N2C7 3258 aa7.01□□□□□ -1.29
PTPN4-210ENST00000485247 FAM196BA6NMK8 535 aa7.01□□□□□ -1.29
PTPN4-210ENST00000485247 PPP1R12BO60237 982 aaPredicted RBP7.01□□□□□ -1.29
PTPN4-210ENST00000485247 FARP2O94887 1054 aaPredicted RBP7.01□□□□□ -1.29
PTPN4-210ENST00000485247 SEC13P55735 322 aa7.01□□□□□ -1.29
PTPN4-210ENST00000485247 SNRPNP63162 240 aaKnown RBP7.01□□□□□ -1.29
PTPN4-210ENST00000485247 DPYDQ12882 1025 aa7.01□□□□□ -1.29
PTPN4-210ENST00000485247 AIMP1Q12904 312 aaKnown RBP7.01□□□□□ -1.29
PTPN4-210ENST00000485247 KIF22Q14807 665 aa7.01□□□□□ -1.29
PTPN4-210ENST00000485247 GRIN2CQ14957 1233 aa7.01□□□□□ -1.29
PTPN4-210ENST00000485247 SF3B3Q15393 1217 aaKnown RBP7.01□□□□□ -1.29
PTPN4-210ENST00000485247 MAP3K11Q16584 847 aa7.01□□□□□ -1.29
PTPN4-210ENST00000485247 PROSER3Q2NL68 480 aa7.01□□□□□ -1.29
PTPN4-210ENST00000485247 HSP90AB3PQ58FF7 597 aa7.01□□□□□ -1.29
PTPN4-210ENST00000485247 PODNQ7Z5L7 613 aa7.01□□□□□ -1.29
PTPN4-210ENST00000485247 TMEM151AQ8N4L1 468 aa7.01□□□□□ -1.29
PTPN4-210ENST00000485247 KCTD17Q8N5Z5 321 aa7.01□□□□□ -1.29
PTPN4-210ENST00000485247 EDARADDQ8WWZ3 215 aa7.01□□□□□ -1.29
PTPN4-210ENST00000485247 PHACTR1Q9C0D0 580 aa7.01□□□□□ -1.29
PTPN4-210ENST00000485247 RNF208Q9H0X6 261 aa7.01□□□□□ -1.29
PTPN4-210ENST00000485247 DEFB129Q9H1M3 183 aa7.01□□□□□ -1.29
PTPN4-210ENST00000485247 ZFYVE28Q9HCC9 887 aa7.01□□□□□ -1.29
PTPN4-210ENST00000485247 PODXL2Q9NZ53 605 aa7.01□□□□□ -1.29
PTPN4-210ENST00000485247 HCN4Q9Y3Q4 1203 aa7.01□□□□□ -1.29
PTPN4-210ENST00000485247 LAMA3Q16787 3333 aa7.01□□□□□ -1.29
PTPN4-210ENST00000485247 COL3A1P02461 1466 aaPredicted RBP7□□□□□ -1.29
PTPN4-210ENST00000485247 GJB1P08034 283 aa7□□□□□ -1.29
PTPN4-210ENST00000485247 ARAFP10398 606 aa7□□□□□ -1.29
PTPN4-210ENST00000485247 CCL5P13501 91 aa7□□□□□ -1.29
PTPN4-210ENST00000485247 HOXB4P17483 251 aaPredicted RBP7□□□□□ -1.29
PTPN4-210ENST00000485247 EIF2S2P20042 333 aaKnown RBP7□□□□□ -1.29
PTPN4-210ENST00000485247 LACTBP83111 547 aaPredicted RBP7□□□□□ -1.29
PTPN4-210ENST00000485247 DACT2Q5SW24 774 aa7□□□□□ -1.29
PTPN4-210ENST00000485247 COPS6Q7L5N1 327 aa7□□□□□ -1.29
PTPN4-210ENST00000485247 LRP10Q7Z4F1 713 aa7□□□□□ -1.29
PTPN4-210ENST00000485247 RHPN1Q8TCX5 695 aa7□□□□□ -1.29
PTPN4-210ENST00000485247 OPTNQ96CV9 577 aa7□□□□□ -1.29
PTPN4-210ENST00000485247 FAM89AQ96GI7 184 aa7□□□□□ -1.29
PTPN4-210ENST00000485247 HSH2DQ96JZ2 352 aa7□□□□□ -1.29
PTPN4-210ENST00000485247 ELP3Q9H9T3 547 aa7□□□□□ -1.29
PTPN4-210ENST00000485247 DNMT3AQ9Y6K1 912 aaPredicted RBP7□□□□□ -1.29
PTPN4-210ENST00000485247 RPTORQ8N122 1335 aa7□□□□□ -1.29
PTPN4-210ENST00000485247 ZSWIM8A7E2V4 1837 aa6.99□□□□□ -1.29
PTPN4-210ENST00000485247 CCL15-CCL14A0A0B4J2E2 113 aa6.99□□□□□ -1.29
PTPN4-210ENST00000485247 NEURL1BA8MQ27 555 aa6.99□□□□□ -1.29
PTPN4-210ENST00000485247 HTATSF1O43719 755 aaKnown RBP6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms