RNA–Protein interactions for RNA: ENST00000480525.5

HDAC6-223, Transcript of histone deacetylase 6, human

TSL 3

Gene HDAC6, Length 412 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-223	ENST00000480525	SAP30BP	Q9UHR5	308 aa	Known RBP	6.01	□□□□□ -1.45
HDAC6-223	ENST00000480525	SCAF8	Q9UPN6	1271 aa	Known RBP	6.01	□□□□□ -1.45
HDAC6-223	ENST00000480525	LOC102724159	A0A0B4J2E5	919 aa		6	□□□□□ -1.45
HDAC6-223	ENST00000480525	TSPY2	A6NKD2	308 aa		6	□□□□□ -1.45
HDAC6-223	ENST00000480525	MINDY4B	A8MYZ0	360 aa		6	□□□□□ -1.45
HDAC6-223	ENST00000480525	HSPA1A	P0DMV8	641 aa	Known RBP	6	□□□□□ -1.45
HDAC6-223	ENST00000480525	HSPA1B	P0DMV9	641 aa	Known RBP	6	□□□□□ -1.45
HDAC6-223	ENST00000480525	TOP1	P11387	765 aa	Known RBP	6	□□□□□ -1.45
HDAC6-223	ENST00000480525	AKR1B1	P15121	316 aa		6	□□□□□ -1.45
HDAC6-223	ENST00000480525	ZKSCAN1	P17029	563 aa	Predicted RBP	6	□□□□□ -1.45
HDAC6-223	ENST00000480525	VCAM1	P19320	739 aa		6	□□□□□ -1.45
HDAC6-223	ENST00000480525	OSBP	P22059	807 aa		6	□□□□□ -1.45
HDAC6-223	ENST00000480525	HSPA4	P34932	840 aa		6	□□□□□ -1.45
HDAC6-223	ENST00000480525	JAG1	P78504	1218 aa		6	□□□□□ -1.45
HDAC6-223	ENST00000480525	TRAF1	Q13077	416 aa		6	□□□□□ -1.45
HDAC6-223	ENST00000480525	MTMR2	Q13614	643 aa		6	□□□□□ -1.45
HDAC6-223	ENST00000480525	SEPT2	Q15019	361 aa		6	□□□□□ -1.45
HDAC6-223	ENST00000480525	PWP2	Q15269	919 aa	Known RBP	6	□□□□□ -1.45
HDAC6-223	ENST00000480525	BTNL9	Q6UXG8	535 aa		6	□□□□□ -1.45
HDAC6-223	ENST00000480525	CATSPERG	Q6ZRH7	1159 aa		6	□□□□□ -1.45
HDAC6-223	ENST00000480525	CCDC129	Q6ZRS4	1044 aa		6	□□□□□ -1.45
HDAC6-223	ENST00000480525	SGMS1	Q86VZ5	419 aa		6	□□□□□ -1.45
HDAC6-223	ENST00000480525	ABRA	Q8N0Z2	381 aa		6	□□□□□ -1.45
HDAC6-223	ENST00000480525	FAM177A1	Q8N128	213 aa	Predicted RBP	6	□□□□□ -1.45
HDAC6-223	ENST00000480525	FAM43A	Q8N2R8	423 aa		6	□□□□□ -1.45
HDAC6-223	ENST00000480525	SAMD3	Q8N6K7	520 aa		6	□□□□□ -1.45
HDAC6-223	ENST00000480525	SHCBP1	Q8NEM2	672 aa		6	□□□□□ -1.45
HDAC6-223	ENST00000480525	DCAF4	Q8WV16	495 aa		6	□□□□□ -1.45
HDAC6-223	ENST00000480525	ERO1A	Q96HE7	468 aa		6	□□□□□ -1.45
HDAC6-223	ENST00000480525	AGXT2	Q9BYV1	514 aa		6	□□□□□ -1.45
HDAC6-223	ENST00000480525	TANGO6	Q9C0B7	1094 aa		6	□□□□□ -1.45
HDAC6-223	ENST00000480525	EMILIN3	Q9NT22	766 aa		6	□□□□□ -1.45
HDAC6-223	ENST00000480525	RABGAP1	Q9Y3P9	1069 aa		6	□□□□□ -1.45
HDAC6-223	ENST00000480525	NID2	Q14112	1375 aa		6	□□□□□ -1.45
HDAC6-223	ENST00000480525	PLXNA1	Q9UIW2	1896 aa		6	□□□□□ -1.45
HDAC6-223	ENST00000480525	PLXNB2	O15031	1838 aa		5.99	□□□□□ -1.45
HDAC6-223	ENST00000480525		A0A1W2PRG0	241 aa		5.99	□□□□□ -1.45
HDAC6-223	ENST00000480525	TRIM75P	A6NK02	468 aa		5.99	□□□□□ -1.45
HDAC6-223	ENST00000480525	FAM196B	A6NMK8	535 aa		5.99	□□□□□ -1.45
HDAC6-223	ENST00000480525	GPR25	O00155	361 aa		5.99	□□□□□ -1.45
HDAC6-223	ENST00000480525	PDHX	O00330	501 aa		5.99	□□□□□ -1.45
HDAC6-223	ENST00000480525	STRN	O43815	780 aa		5.99	□□□□□ -1.45
HDAC6-223	ENST00000480525	FKTN	O75072	461 aa		5.99	□□□□□ -1.45
HDAC6-223	ENST00000480525	AOC2	O75106	756 aa		5.99	□□□□□ -1.45
HDAC6-223	ENST00000480525	GDF11	O95390	407 aa		5.99	□□□□□ -1.45
HDAC6-223	ENST00000480525	CYP2D6	P10635	497 aa		5.99	□□□□□ -1.45
HDAC6-223	ENST00000480525	HSPA8	P11142	646 aa	Known RBP	5.99	□□□□□ -1.45
HDAC6-223	ENST00000480525	EEF2	P13639	858 aa	Known RBP	5.99	□□□□□ -1.45
HDAC6-223	ENST00000480525	MCM5	P33992	734 aa		5.99	□□□□□ -1.45
HDAC6-223	ENST00000480525	HMGCS2	P54868	508 aa		5.99	□□□□□ -1.45
HDAC6-223	ENST00000480525	EVC	P57679	992 aa		5.99	□□□□□ -1.45
HDAC6-223	ENST00000480525	CCNA1	P78396	465 aa		5.99	□□□□□ -1.45
HDAC6-223	ENST00000480525	HTRA3	P83110	453 aa		5.99	□□□□□ -1.45
HDAC6-223	ENST00000480525	TFAP4	Q01664	338 aa		5.99	□□□□□ -1.45
HDAC6-223	ENST00000480525	CRHR2	Q13324	411 aa		5.99	□□□□□ -1.45
HDAC6-223	ENST00000480525	PRKG1	Q13976	671 aa		5.99	□□□□□ -1.45
HDAC6-223	ENST00000480525	COG2	Q14746	738 aa		5.99	□□□□□ -1.45
HDAC6-223	ENST00000480525	RAB3GAP1	Q15042	981 aa		5.99	□□□□□ -1.45
HDAC6-223	ENST00000480525	SEC23A	Q15436	765 aa		5.99	□□□□□ -1.45
HDAC6-223	ENST00000480525	TAF1C	Q15572	869 aa	Predicted RBP	5.99	□□□□□ -1.45
HDAC6-223	ENST00000480525	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	5.99	□□□□□ -1.45
HDAC6-223	ENST00000480525	FAM160B2	Q86V87	743 aa		5.99	□□□□□ -1.45
HDAC6-223	ENST00000480525	TBC1D10C	Q8IV04	446 aa		5.99	□□□□□ -1.45
HDAC6-223	ENST00000480525	MB21D2	Q8IYB1	491 aa	Predicted RBP	5.99	□□□□□ -1.45
HDAC6-223	ENST00000480525	PRPF38A	Q8NAV1	312 aa	Known RBP	5.99	□□□□□ -1.45
HDAC6-223	ENST00000480525	SLC44A5	Q8NCS7	719 aa		5.99	□□□□□ -1.45
HDAC6-223	ENST00000480525	CHURC1	Q8WUH1	139 aa		5.99	□□□□□ -1.45
HDAC6-223	ENST00000480525	CNKSR2	Q8WXI2	1034 aa		5.99	□□□□□ -1.45
HDAC6-223	ENST00000480525	DYNLL2	Q96FJ2	89 aa		5.99	□□□□□ -1.45
HDAC6-223	ENST00000480525	CEP95	Q96GE4	821 aa		5.99	□□□□□ -1.45
HDAC6-223	ENST00000480525	FEZ1	Q99689	392 aa		5.99	□□□□□ -1.45
HDAC6-223	ENST00000480525	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	5.99	□□□□□ -1.45
HDAC6-223	ENST00000480525	IL17RB	Q9NRM6	502 aa		5.99	□□□□□ -1.45
HDAC6-223	ENST00000480525	FEM1B	Q9UK73	627 aa		5.99	□□□□□ -1.45
HDAC6-223	ENST00000480525	FZD1	Q9UP38	647 aa		5.99	□□□□□ -1.45
HDAC6-223	ENST00000480525	RBM8A	Q9Y5S9	174 aa	Known RBP	5.99	□□□□□ -1.45
HDAC6-223	ENST00000480525	HTT	P42858	3142 aa		5.99	□□□□□ -1.45
HDAC6-223	ENST00000480525	NEDD4	P46934	1319 aa		5.99	□□□□□ -1.45
HDAC6-223	ENST00000480525	KIAA0100	Q14667	2235 aa	Known RBP	5.98	□□□□□ -1.45
HDAC6-223	ENST00000480525	CYP2D7	A0A087X1C5	515 aa		5.98	□□□□□ -1.45
HDAC6-223	ENST00000480525		E7EWF7	191 aa		5.98	□□□□□ -1.45
HDAC6-223	ENST00000480525		F5H6K3	240 aa		5.98	□□□□□ -1.45
HDAC6-223	ENST00000480525	FOXN1	O15353	648 aa		5.98	□□□□□ -1.45
HDAC6-223	ENST00000480525	DDAH1	O94760	285 aa		5.98	□□□□□ -1.45
HDAC6-223	ENST00000480525	SLC25A27	O95847	323 aa		5.98	□□□□□ -1.45
HDAC6-223	ENST00000480525	HOXC6	P09630	235 aa		5.98	□□□□□ -1.45
HDAC6-223	ENST00000480525	CALM1	P0DP23	149 aa		5.98	□□□□□ -1.45
HDAC6-223	ENST00000480525	CALM2	P0DP24	149 aa		5.98	□□□□□ -1.45
HDAC6-223	ENST00000480525	CALM3	P0DP25	149 aa		5.98	□□□□□ -1.45
HDAC6-223	ENST00000480525	XRCC5	P13010	732 aa	Known RBP	5.98	□□□□□ -1.45
HDAC6-223	ENST00000480525	MCC	P23508	829 aa		5.98	□□□□□ -1.45
HDAC6-223	ENST00000480525	PSMA5	P28066	241 aa		5.98	□□□□□ -1.45
HDAC6-223	ENST00000480525	MAPK4	P31152	587 aa		5.98	□□□□□ -1.45
HDAC6-223	ENST00000480525	HERVK_113	P62684	666 aa		5.98	□□□□□ -1.45
HDAC6-223	ENST00000480525	IRX3	P78415	501 aa	Predicted RBP	5.98	□□□□□ -1.45
HDAC6-223	ENST00000480525	LACTB	P83111	547 aa	Predicted RBP	5.98	□□□□□ -1.45
HDAC6-223	ENST00000480525	SP3	Q02447	781 aa		5.98	□□□□□ -1.45
HDAC6-223	ENST00000480525	GHRHR	Q02643	423 aa		5.98	□□□□□ -1.45
HDAC6-223	ENST00000480525	PTH1R	Q03431	593 aa		5.98	□□□□□ -1.45
HDAC6-223	ENST00000480525	KLRC3	Q07444	240 aa		5.98	□□□□□ -1.45

Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms