RNA–Protein interactions for RNA: ENST00000475639.5

U2AF1-209, Transcript of U2 small nuclear RNA auxiliary factor 1, humanhuman

TSL 1 (best)

Gene U2AF1, Length 4,694 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1-209ENST00000475639 HDAC9Q9UKV0 1011 aa12.78□□□□□ -0.36
U2AF1-209ENST00000475639 IRAK1P51617 712 aa12.77□□□□□ -0.36
U2AF1-209ENST00000475639 CLNS1AP54105 237 aaKnown RBP12.77□□□□□ -0.36
U2AF1-209ENST00000475639 FYB2Q5VWT5 728 aa12.77□□□□□ -0.36
U2AF1-209ENST00000475639 AFAP1L2Q8N4X5 818 aa12.77□□□□□ -0.36
U2AF1-209ENST00000475639 ZKSCAN4Q969J2 545 aaPredicted RBP12.77□□□□□ -0.36
U2AF1-209ENST00000475639 EVI5LQ96CN4 794 aa12.77□□□□□ -0.36
U2AF1-209ENST00000475639 C6orf50Q9HD87 102 aa12.77□□□□□ -0.36
U2AF1-209ENST00000475639 A0A1W2PQ27 194 aa12.77□□□□□ -0.36
U2AF1-209ENST00000475639 A0A1W2PQ64 194 aa12.77□□□□□ -0.36
U2AF1-209ENST00000475639 A0A1W2PQD8 194 aa12.77□□□□□ -0.36
U2AF1-209ENST00000475639 C6orf229H3BNL8 230 aa12.77□□□□□ -0.36
U2AF1-209ENST00000475639 AFMP43652 599 aa12.77□□□□□ -0.36
U2AF1-209ENST00000475639 FNTAP49354 379 aa12.77□□□□□ -0.36
U2AF1-209ENST00000475639 SH3BGRP55822 239 aaPredicted RBP12.77□□□□□ -0.36
U2AF1-209ENST00000475639 ARID5AQ03989 594 aa12.77□□□□□ -0.36
U2AF1-209ENST00000475639 CEP85LQ5SZL2 805 aa12.77□□□□□ -0.36
U2AF1-209ENST00000475639 ATL3Q6DD88 541 aa12.77□□□□□ -0.36
U2AF1-209ENST00000475639 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.77□□□□□ -0.36
U2AF1-209ENST00000475639 NOA1Q8NC60 698 aaKnown RBP12.77□□□□□ -0.36
U2AF1-209ENST00000475639 VIPAS39Q9H9C1 493 aa12.77□□□□□ -0.36
U2AF1-209ENST00000475639 AFG3L2Q9Y4W6 797 aa12.77□□□□□ -0.36
U2AF1-209ENST00000475639 ERCC5P28715 1186 aaPredicted RBP12.77□□□□□ -0.37
U2AF1-209ENST00000475639 MYL5Q02045 173 aa12.77□□□□□ -0.37
U2AF1-209ENST00000475639 C11orf91Q3C1V1 193 aa12.77□□□□□ -0.37
U2AF1-209ENST00000475639 CROCCP2Q86T23 111 aa12.77□□□□□ -0.37
U2AF1-209ENST00000475639 CCDC26Q8TAB7 109 aa12.77□□□□□ -0.37
U2AF1-209ENST00000475639 TBC1D22AQ8WUA7 517 aa12.77□□□□□ -0.37
U2AF1-209ENST00000475639 CAPN7Q9Y6W3 813 aa12.77□□□□□ -0.37
U2AF1-209ENST00000475639 N4BP2Q86UW6 1770 aaPredicted RBP12.77□□□□□ -0.37
U2AF1-209ENST00000475639 PPFIA3O75145 1194 aa12.77□□□□□ -0.37
U2AF1-209ENST00000475639 CTDNEP1O95476 244 aa12.77□□□□□ -0.37
U2AF1-209ENST00000475639 GKAP1Q5VSY0 366 aaPredicted RBP12.77□□□□□ -0.37
U2AF1-209ENST00000475639 TMED8Q6PL24 325 aaPredicted RBP12.77□□□□□ -0.37
U2AF1-209ENST00000475639 Q6ZUG5 572 aa12.77□□□□□ -0.37
U2AF1-209ENST00000475639 RAB11FIP4Q86YS3 637 aa12.77□□□□□ -0.37
U2AF1-209ENST00000475639 CCDC170Q8IYT3 715 aa12.77□□□□□ -0.37
U2AF1-209ENST00000475639 NSUN7Q8NE18 718 aaKnown RBP12.77□□□□□ -0.37
U2AF1-209ENST00000475639 XAGE2Q96GT9 111 aa12.77□□□□□ -0.37
U2AF1-209ENST00000475639 SNRKQ9NRH2 765 aa12.77□□□□□ -0.37
U2AF1-209ENST00000475639 NUTM2BA6NNL0 878 aaPredicted RBP12.76□□□□□ -0.37
U2AF1-209ENST00000475639 NUTM2EB1AL46 878 aaPredicted RBP12.76□□□□□ -0.37
U2AF1-209ENST00000475639 B4DLN1 442 aa12.76□□□□□ -0.37
U2AF1-209ENST00000475639 PAX7P23759 505 aa12.76□□□□□ -0.37
U2AF1-209ENST00000475639 MRPL12P52815 198 aaKnown RBP12.76□□□□□ -0.37
U2AF1-209ENST00000475639 NUTM2AQ8IVF1 878 aaPredicted RBP12.76□□□□□ -0.37
U2AF1-209ENST00000475639 N4BP2L2Q92802 583 aaPredicted RBP12.76□□□□□ -0.37
U2AF1-209ENST00000475639 ITSN1Q15811 1721 aa12.76□□□□□ -0.37
U2AF1-209ENST00000475639 FAM208AQ9UK61 1670 aaKnown RBP12.76□□□□□ -0.37
U2AF1-209ENST00000475639 ZNF202O95125 648 aa12.76□□□□□ -0.37
U2AF1-209ENST00000475639 CNGA1P29973 690 aa12.76□□□□□ -0.37
U2AF1-209ENST00000475639 NBPF20Q3BBV1 942 aa12.76□□□□□ -0.37
U2AF1-209ENST00000475639 DACT3Q96B18 629 aaPredicted RBP12.76□□□□□ -0.37
U2AF1-209ENST00000475639 TRMT112Q9UI30 125 aaKnown RBP12.76□□□□□ -0.37
U2AF1-209ENST00000475639 HPCAL4Q9UM19 191 aa12.76□□□□□ -0.37
U2AF1-209ENST00000475639 ACTN4O43707 911 aaKnown RBP12.76□□□□□ -0.37
U2AF1-209ENST00000475639 BCAS4Q8TDM0 211 aa12.76□□□□□ -0.37
U2AF1-209ENST00000475639 BCAP29Q9UHQ4 241 aa12.76□□□□□ -0.37
U2AF1-209ENST00000475639 GUCA1BQ9UMX6 200 aa12.76□□□□□ -0.37
U2AF1-209ENST00000475639 WDR93Q6P2C0 686 aa12.76□□□□□ -0.37
U2AF1-209ENST00000475639 ZNF589Q86UQ0 364 aaPredicted RBP12.76□□□□□ -0.37
U2AF1-209ENST00000475639 AGLP35573 1532 aa12.75□□□□□ -0.37
U2AF1-209ENST00000475639 GNAT3A8MTJ3 354 aa12.75□□□□□ -0.37
U2AF1-209ENST00000475639 FAM13AO94988 1023 aa12.75□□□□□ -0.37
U2AF1-209ENST00000475639 INHBEP58166 350 aa12.75□□□□□ -0.37
U2AF1-209ENST00000475639 TAF7Q15545 349 aaPredicted RBP12.75□□□□□ -0.37
U2AF1-209ENST00000475639 HSP90AA4PQ58FG1 418 aa12.75□□□□□ -0.37
U2AF1-209ENST00000475639 RILPL1Q5EBL4 403 aa12.75□□□□□ -0.37
U2AF1-209ENST00000475639 CYB5RLQ6IPT4 315 aa12.75□□□□□ -0.37
U2AF1-209ENST00000475639 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.75□□□□□ -0.37
U2AF1-209ENST00000475639 SOWAHDA6NJG2 315 aa12.75□□□□□ -0.37
U2AF1-209ENST00000475639 CETN3O15182 167 aa12.75□□□□□ -0.37
U2AF1-209ENST00000475639 DIXDC1Q155Q3 683 aa12.75□□□□□ -0.37
U2AF1-209ENST00000475639 WHAMMP3Q1A5X7 153 aa12.75□□□□□ -0.37
U2AF1-209ENST00000475639 NAIF1Q69YI7 327 aaPredicted RBP12.75□□□□□ -0.37
U2AF1-209ENST00000475639 LINC00301Q8NCQ3 95 aa12.75□□□□□ -0.37
U2AF1-209ENST00000475639 ARHGEF2Q92974 986 aaKnown RBP12.75□□□□□ -0.37
U2AF1-209ENST00000475639 LRRC2Q9BYS8 371 aa12.75□□□□□ -0.37
U2AF1-209ENST00000475639 SLC24A3Q9HC58 644 aa12.75□□□□□ -0.37
U2AF1-209ENST00000475639 RTEL1Q9NZ71 1219 aa12.75□□□□□ -0.37
U2AF1-209ENST00000475639 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.75□□□□□ -0.37
U2AF1-209ENST00000475639 GRIN2DO15399 1336 aa12.75□□□□□ -0.37
U2AF1-209ENST00000475639 PTPDC1A2A3K4 754 aa12.75□□□□□ -0.37
U2AF1-209ENST00000475639 BIRC2Q13490 618 aa12.75□□□□□ -0.37
U2AF1-209ENST00000475639 CCDC62Q6P9F0 684 aa12.75□□□□□ -0.37
U2AF1-209ENST00000475639 FOXO3O43524 673 aa12.74□□□□□ -0.37
U2AF1-209ENST00000475639 ECM2O94769 699 aaPredicted RBP12.74□□□□□ -0.37
U2AF1-209ENST00000475639 ANKRD24Q8TF21 1146 aa12.74□□□□□ -0.37
U2AF1-209ENST00000475639 SUDS3Q9H7L9 328 aaPredicted RBP12.74□□□□□ -0.37
U2AF1-209ENST00000475639 VEZTQ9HBM0 779 aa12.74□□□□□ -0.37
U2AF1-209ENST00000475639 CLIC4Q9Y696 253 aa12.74□□□□□ -0.37
U2AF1-209ENST00000475639 GBP1P32455 592 aa12.74□□□□□ -0.37
U2AF1-209ENST00000475639 GGCXP38435 758 aa12.74□□□□□ -0.37
U2AF1-209ENST00000475639 EIF4A2Q14240 407 aaKnown RBP12.74□□□□□ -0.37
U2AF1-209ENST00000475639 ZNF569Q5MCW4 686 aa12.74□□□□□ -0.37
U2AF1-209ENST00000475639 KRT79Q5XKE5 535 aa12.74□□□□□ -0.37
U2AF1-209ENST00000475639 LDHAL6AQ6ZMR3 332 aa12.74□□□□□ -0.37
U2AF1-209ENST00000475639 PNMA8AQ86V59 439 aaPredicted RBP12.74□□□□□ -0.37
U2AF1-209ENST00000475639 MED23Q9ULK4 1368 aa12.74□□□□□ -0.37
U2AF1-209ENST00000475639 BICDL2A1A5D9 508 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms