RNA–Protein interactions for RNA: ENST00000472217.1

USF1-204, Transcript of upstream transcription factor 1, humanhuman

TSL 2

Gene USF1, Length 1,097 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-204ENST00000472217 TRIB2Q92519 343 aa10.82□□□□□ -0.68
USF1-204ENST00000472217 USP6NLQ92738 828 aa10.82□□□□□ -0.68
USF1-204ENST00000472217 DEFB118Q96PH6 123 aa10.82□□□□□ -0.68
USF1-204ENST00000472217 TANGO6Q9C0B7 1094 aa10.82□□□□□ -0.68
USF1-204ENST00000472217 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.82□□□□□ -0.68
USF1-204ENST00000472217 ARHGEF10LQ9HCE6 1279 aa10.82□□□□□ -0.68
USF1-204ENST00000472217 TMX2Q9Y320 296 aa10.82□□□□□ -0.68
USF1-204ENST00000472217 PARP14Q460N5 1801 aa10.81□□□□□ -0.68
USF1-204ENST00000472217 BRCA2P51587 3418 aa10.81□□□□□ -0.68
USF1-204ENST00000472217 FARP2O94887 1054 aaPredicted RBP10.81□□□□□ -0.68
USF1-204ENST00000472217 XRCC5P13010 732 aaKnown RBP10.81□□□□□ -0.68
USF1-204ENST00000472217 CCNA1P78396 465 aa10.81□□□□□ -0.68
USF1-204ENST00000472217 HDAC1Q13547 482 aaPredicted RBP10.81□□□□□ -0.68
USF1-204ENST00000472217 LRRFIP1Q32MZ4 808 aaKnown RBP10.81□□□□□ -0.68
USF1-204ENST00000472217 SBK1Q52WX2 424 aa10.81□□□□□ -0.68
USF1-204ENST00000472217 MORN1Q5T089 497 aa10.81□□□□□ -0.68
USF1-204ENST00000472217 ANKRD45Q5TZF3 282 aa10.81□□□□□ -0.68
USF1-204ENST00000472217 SPICE1Q8N0Z3 855 aa10.81□□□□□ -0.68
USF1-204ENST00000472217 LPAR1Q92633 364 aa10.81□□□□□ -0.68
USF1-204ENST00000472217 SEC62Q99442 399 aaKnown RBP10.81□□□□□ -0.68
USF1-204ENST00000472217 FSD1Q9BTV5 496 aa10.81□□□□□ -0.68
USF1-204ENST00000472217 SH2D4AQ9H788 454 aa10.81□□□□□ -0.68
USF1-204ENST00000472217 VCPKMTQ9H867 229 aa10.81□□□□□ -0.68
USF1-204ENST00000472217 CWC22Q9HCG8 908 aaKnown RBP10.81□□□□□ -0.68
USF1-204ENST00000472217 RPTORQ8N122 1335 aa10.81□□□□□ -0.68
USF1-204ENST00000472217 MINDY4BA8MYZ0 360 aa10.8□□□□□ -0.68
USF1-204ENST00000472217 SLC34A2O95436 690 aa10.8□□□□□ -0.68
USF1-204ENST00000472217 TFRCP02786 760 aaKnown RBP10.8□□□□□ -0.68
USF1-204ENST00000472217 EEF2P13639 858 aaKnown RBP10.8□□□□□ -0.68
USF1-204ENST00000472217 GNAT2P19087 354 aa10.8□□□□□ -0.68
USF1-204ENST00000472217 RASA1P20936 1047 aa10.8□□□□□ -0.68
USF1-204ENST00000472217 RGS2P41220 211 aa10.8□□□□□ -0.68
USF1-204ENST00000472217 TDO2P48775 406 aa10.8□□□□□ -0.68
USF1-204ENST00000472217 ATP2B2Q01814 1243 aa10.8□□□□□ -0.68
USF1-204ENST00000472217 COG2Q14746 738 aa10.8□□□□□ -0.68
USF1-204ENST00000472217 CCL14Q16627 93 aa10.8□□□□□ -0.68
USF1-204ENST00000472217 WDR78Q5VTH9 848 aa10.8□□□□□ -0.68
USF1-204ENST00000472217 STK11IPQ8N1F8 1099 aa10.8□□□□□ -0.68
USF1-204ENST00000472217 GCC1Q96CN9 775 aa10.8□□□□□ -0.68
USF1-204ENST00000472217 APBA2Q99767 749 aa10.8□□□□□ -0.68
USF1-204ENST00000472217 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.8□□□□□ -0.68
USF1-204ENST00000472217 CRISPLD2Q9H0B8 497 aa10.8□□□□□ -0.68
USF1-204ENST00000472217 KANSL2Q9H9L4 492 aa10.8□□□□□ -0.68
USF1-204ENST00000472217 HMX1Q9NP08 348 aaPredicted RBP10.8□□□□□ -0.68
USF1-204ENST00000472217 ZBTB47Q9UFB7 747 aaPredicted RBP10.8□□□□□ -0.68
USF1-204ENST00000472217 ZNF236Q9UL36 1845 aa10.79□□□□□ -0.68
USF1-204ENST00000472217 SLC15A5A6NIM6 579 aa10.79□□□□□ -0.68
USF1-204ENST00000472217 WDR46O15213 610 aaKnown RBP10.79□□□□□ -0.68
USF1-204ENST00000472217 FLOT1O75955 427 aa10.79□□□□□ -0.68
USF1-204ENST00000472217 APPP05067 770 aa10.79□□□□□ -0.68
USF1-204ENST00000472217 PRKAR2AP13861 404 aaKnown RBP10.79□□□□□ -0.68
USF1-204ENST00000472217 ZKSCAN1P17029 563 aaPredicted RBP10.79□□□□□ -0.68
USF1-204ENST00000472217 MAP2K5Q13163 448 aa10.79□□□□□ -0.68
USF1-204ENST00000472217 ZMYM1Q5SVZ6 1142 aa10.79□□□□□ -0.68
USF1-204ENST00000472217 MAP3K21Q5TCX8 1036 aa10.79□□□□□ -0.68
USF1-204ENST00000472217 TRMT44Q8IYL2 757 aaKnown RBP10.79□□□□□ -0.68
USF1-204ENST00000472217 IFNL3Q8IZI9 196 aa10.79□□□□□ -0.68
USF1-204ENST00000472217 ATG4CQ96DT6 458 aa10.79□□□□□ -0.68
USF1-204ENST00000472217 MOV10L1Q9BXT6 1211 aaKnown RBP10.79□□□□□ -0.68
USF1-204ENST00000472217 HOXC10Q9NYD6 342 aa10.79□□□□□ -0.68
USF1-204ENST00000472217 STAP2Q9UGK3 403 aa10.79□□□□□ -0.68
USF1-204ENST00000472217 PATL2C9JE40 543 aaKnown RBP10.78□□□□□ -0.68
USF1-204ENST00000472217 H0YGN5 161 aa10.78□□□□□ -0.68
USF1-204ENST00000472217 CAPN2P17655 700 aa10.78□□□□□ -0.68
USF1-204ENST00000472217 PTPREP23469 700 aa10.78□□□□□ -0.68
USF1-204ENST00000472217 DSG3P32926 999 aa10.78□□□□□ -0.68
USF1-204ENST00000472217 PDE1AP54750 535 aa10.78□□□□□ -0.68
USF1-204ENST00000472217 CACNB2Q08289 660 aaPredicted RBP10.78□□□□□ -0.68
USF1-204ENST00000472217 AAMPQ13685 434 aa10.78□□□□□ -0.68
USF1-204ENST00000472217 GRB14Q14449 540 aa10.78□□□□□ -0.68
USF1-204ENST00000472217 MB21D1Q8N884 522 aa10.78□□□□□ -0.68
USF1-204ENST00000472217 HTATIP2Q9BUP3 242 aa10.78□□□□□ -0.68
USF1-204ENST00000472217 SPATC1LQ9H0A9 340 aa10.78□□□□□ -0.68
USF1-204ENST00000472217 MKNK2Q9HBH9 465 aa10.78□□□□□ -0.68
USF1-204ENST00000472217 GOPCQ9HD26 462 aa10.78□□□□□ -0.68
USF1-204ENST00000472217 IVNS1ABPQ9Y6Y0 642 aa10.78□□□□□ -0.68
USF1-204ENST00000472217 COL11A1P12107 1806 aaPredicted RBP10.77□□□□□ -0.68
USF1-204ENST00000472217 FOXP2O15409 715 aa10.77□□□□□ -0.69
USF1-204ENST00000472217 RAD21O60216 631 aa10.77□□□□□ -0.69
USF1-204ENST00000472217 PRDM1O75626 825 aa10.77□□□□□ -0.69
USF1-204ENST00000472217 HOXC6P09630 235 aa10.77□□□□□ -0.69
USF1-204ENST00000472217 ERCC3P19447 782 aa10.77□□□□□ -0.69
USF1-204ENST00000472217 SAMD1Q6SPF0 538 aaPredicted RBP10.77□□□□□ -0.69
USF1-204ENST00000472217 CCDC129Q6ZRS4 1044 aa10.77□□□□□ -0.69
USF1-204ENST00000472217 SHCBP1Q8NEM2 672 aa10.77□□□□□ -0.69
USF1-204ENST00000472217 EXOC6Q8TAG9 804 aa10.77□□□□□ -0.69
USF1-204ENST00000472217 DIS3LQ8TF46 1054 aaKnown RBP10.77□□□□□ -0.69
USF1-204ENST00000472217 DPF3Q92784 378 aa10.77□□□□□ -0.69
USF1-204ENST00000472217 PAWRQ96IZ0 340 aaKnown RBP10.77□□□□□ -0.69
USF1-204ENST00000472217 NACAP1Q9BZK3 213 aa10.77□□□□□ -0.69
USF1-204ENST00000472217 FBXO28Q9NVF7 368 aa10.77□□□□□ -0.69
USF1-204ENST00000472217 FLRT1Q9NZU1 646 aa10.77□□□□□ -0.69
USF1-204ENST00000472217 NYAP2Q9P242 653 aa10.77□□□□□ -0.69
USF1-204ENST00000472217 FRMPD3Q5JV73 1810 aa10.77□□□□□ -0.69
USF1-204ENST00000472217 IGKV6D-41A0A0C4DH26 115 aa10.76□□□□□ -0.69
USF1-204ENST00000472217 CCND3P30281 292 aaPredicted RBP10.76□□□□□ -0.69
USF1-204ENST00000472217 PPARAQ07869 468 aa10.76□□□□□ -0.69
USF1-204ENST00000472217 PLS1Q14651 629 aa10.76□□□□□ -0.69
USF1-204ENST00000472217 HABP4Q5JVS0 413 aaKnown RBP10.76□□□□□ -0.69
USF1-204ENST00000472217 FAM83BQ5T0W9 1011 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms