RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 ERICH2A1L162 156 aa6.05□□□□□ -1.44
SYNE1-220ENST00000471834 ABLIM1O14639 778 aa6.05□□□□□ -1.44
SYNE1-220ENST00000471834 GHRP10912 638 aa6.05□□□□□ -1.44
SYNE1-220ENST00000471834 TROAPQ12815 778 aa6.05□□□□□ -1.44
SYNE1-220ENST00000471834 CENPTQ96BT3 561 aa6.05□□□□□ -1.44
SYNE1-220ENST00000471834 AK7Q96M32 723 aa6.05□□□□□ -1.44
SYNE1-220ENST00000471834 SLC26A8Q96RN1 970 aa6.05□□□□□ -1.44
SYNE1-220ENST00000471834 CTAGE1Q96RT6 745 aa6.05□□□□□ -1.44
SYNE1-220ENST00000471834 KCNH3Q9ULD8 1083 aa6.05□□□□□ -1.44
SYNE1-220ENST00000471834 WWC3Q9ULE0 1092 aa6.05□□□□□ -1.44
SYNE1-220ENST00000471834 ANGEL1Q9UNK9 670 aaKnown RBP6.05□□□□□ -1.44
SYNE1-220ENST00000471834 DDX52Q9Y2R4 599 aaKnown RBP eCLIP6.05□□□□□ -1.44
SYNE1-220ENST00000471834 SMC2O95347 1197 aa6.05□□□□□ -1.44
SYNE1-220ENST00000471834 MCM3P25205 808 aa6.05□□□□□ -1.44
SYNE1-220ENST00000471834 CEBPZQ03701 1054 aaKnown RBP6.05□□□□□ -1.44
SYNE1-220ENST00000471834 PLEKHO1Q53GL0 409 aaPredicted RBP6.05□□□□□ -1.44
SYNE1-220ENST00000471834 CCDC34Q96HJ3 373 aa6.05□□□□□ -1.44
SYNE1-220ENST00000471834 PYM1Q9BRP8 204 aaKnown RBP6.05□□□□□ -1.44
SYNE1-220ENST00000471834 CCSER1Q9C0I3 900 aa6.05□□□□□ -1.44
SYNE1-220ENST00000471834 LONRF3Q496Y0 759 aa6.05□□□□□ -1.44
SYNE1-220ENST00000471834 DHX37Q8IY37 1157 aaKnown RBP6.05□□□□□ -1.44
SYNE1-220ENST00000471834 ABTB2Q8N961 1025 aa6.05□□□□□ -1.44
SYNE1-220ENST00000471834 SMARCC1Q92922 1105 aaPredicted RBP6.05□□□□□ -1.44
SYNE1-220ENST00000471834 CAPN11Q9UMQ6 739 aa6.05□□□□□ -1.44
SYNE1-220ENST00000471834 AMOTL2Q9Y2J4 779 aa6.05□□□□□ -1.44
SYNE1-220ENST00000471834 MMP1P03956 469 aa6.05□□□□□ -1.44
SYNE1-220ENST00000471834 SLC8A3P57103 927 aa6.05□□□□□ -1.44
SYNE1-220ENST00000471834 SPC24Q8NBT2 197 aa6.05□□□□□ -1.44
SYNE1-220ENST00000471834 SLC52A2Q9HAB3 445 aa6.05□□□□□ -1.44
SYNE1-220ENST00000471834 EBF2Q9HAK2 575 aa6.05□□□□□ -1.44
SYNE1-220ENST00000471834 TACC3Q9Y6A5 838 aa6.05□□□□□ -1.44
SYNE1-220ENST00000471834 DOCK2Q92608 1830 aa6.04□□□□□ -1.44
SYNE1-220ENST00000471834 BIN1O00499 593 aa6.04□□□□□ -1.44
SYNE1-220ENST00000471834 DDX58O95786 925 aaKnown RBP6.04□□□□□ -1.44
SYNE1-220ENST00000471834 NEXNQ0ZGT2 675 aa6.04□□□□□ -1.44
SYNE1-220ENST00000471834 ALS2CLQ60I27 953 aa6.04□□□□□ -1.44
SYNE1-220ENST00000471834 DCAF5Q96JK2 942 aa6.04□□□□□ -1.44
SYNE1-220ENST00000471834 BICC1Q9H694 974 aaKnown RBP6.04□□□□□ -1.44
SYNE1-220ENST00000471834 CTNNAL1Q9UBT7 734 aa6.04□□□□□ -1.44
SYNE1-220ENST00000471834 PDE2AO00408 941 aaPredicted RBP6.04□□□□□ -1.44
SYNE1-220ENST00000471834 ADAMTS2O95450 1211 aa6.04□□□□□ -1.44
SYNE1-220ENST00000471834 TEFQ10587 303 aa6.04□□□□□ -1.44
SYNE1-220ENST00000471834 CCDC70Q6NSX1 233 aa6.04□□□□□ -1.44
SYNE1-220ENST00000471834 PHF8Q9UPP1 1060 aa6.04□□□□□ -1.44
SYNE1-220ENST00000471834 RIPOR2Q9Y4F9 1068 aa6.04□□□□□ -1.44
SYNE1-220ENST00000471834 CLIC4Q9Y696 253 aa6.04□□□□□ -1.44
SYNE1-220ENST00000471834 MYBL2P10244 700 aa6.04□□□□□ -1.44
SYNE1-220ENST00000471834 PIM1P11309 404 aaPredicted RBP6.04□□□□□ -1.44
SYNE1-220ENST00000471834 INHBEP58166 350 aa6.04□□□□□ -1.44
SYNE1-220ENST00000471834 ATP2C1P98194 919 aaPredicted RBP6.04□□□□□ -1.44
SYNE1-220ENST00000471834 ICA1Q05084 483 aa6.04□□□□□ -1.44
SYNE1-220ENST00000471834 FAXDC2Q96IV6 333 aa6.04□□□□□ -1.44
SYNE1-220ENST00000471834 STRBPQ96SI9 672 aaKnown RBP6.04□□□□□ -1.44
SYNE1-220ENST00000471834 PHF20Q9BVI0 1012 aa6.04□□□□□ -1.44
SYNE1-220ENST00000471834 PA2G4Q9UQ80 394 aaKnown RBP6.04□□□□□ -1.44
SYNE1-220ENST00000471834 SPATA31A1Q5TZJ5 1347 aa6.04□□□□□ -1.44
SYNE1-220ENST00000471834 RHOBTB3O94955 611 aa6.04□□□□□ -1.44
SYNE1-220ENST00000471834 FMNL1O95466 1100 aaPredicted RBP6.04□□□□□ -1.44
SYNE1-220ENST00000471834 STK3Q13188 491 aa6.04□□□□□ -1.44
SYNE1-220ENST00000471834 RRP12Q5JTH9 1297 aaKnown RBP6.04□□□□□ -1.44
SYNE1-220ENST00000471834 TTI2Q6NXR4 508 aa6.04□□□□□ -1.44
SYNE1-220ENST00000471834 POTEDQ86YR6 584 aa6.04□□□□□ -1.44
SYNE1-220ENST00000471834 ZNF496Q96IT1 587 aaPredicted RBP6.04□□□□□ -1.44
SYNE1-220ENST00000471834 GDF3Q9NR23 364 aa6.04□□□□□ -1.44
SYNE1-220ENST00000471834 ZNF263O14978 683 aa6.04□□□□□ -1.44
SYNE1-220ENST00000471834 PCCAP05165 728 aaPredicted RBP6.04□□□□□ -1.44
SYNE1-220ENST00000471834 PHKG2P15735 406 aa6.04□□□□□ -1.44
SYNE1-220ENST00000471834 G3BP1Q13283 466 aaKnown RBP eCLIP6.04□□□□□ -1.44
SYNE1-220ENST00000471834 GIMAP8Q8ND71 665 aaPredicted RBP6.04□□□□□ -1.44
SYNE1-220ENST00000471834 SEC31BQ9NQW1 1179 aa6.04□□□□□ -1.44
SYNE1-220ENST00000471834 LGALS16A8MUM7 142 aa6.04□□□□□ -1.44
SYNE1-220ENST00000471834 PPP1R2P41236 205 aa6.04□□□□□ -1.44
SYNE1-220ENST00000471834 EPS15P42566 896 aa6.04□□□□□ -1.44
SYNE1-220ENST00000471834 PPFIA1Q13136 1202 aa6.04□□□□□ -1.44
SYNE1-220ENST00000471834 SLMAPQ14BN4 828 aa6.04□□□□□ -1.44
SYNE1-220ENST00000471834 PKN1Q16512 942 aa6.04□□□□□ -1.44
SYNE1-220ENST00000471834 PPP4R3AQ6IN85 833 aa6.04□□□□□ -1.44
SYNE1-220ENST00000471834 TOGARAM2Q6ZUX3 1019 aa6.04□□□□□ -1.44
SYNE1-220ENST00000471834 MNS1Q8NEH6 495 aa6.04□□□□□ -1.44
SYNE1-220ENST00000471834 NKX2-3Q8TAU0 364 aa6.04□□□□□ -1.44
SYNE1-220ENST00000471834 SYT11Q9BT88 431 aa6.04□□□□□ -1.44
SYNE1-220ENST00000471834 FSD1Q9BTV5 496 aa6.04□□□□□ -1.44
SYNE1-220ENST00000471834 EIF3JO75822 258 aaKnown RBP6.03□□□□□ -1.44
SYNE1-220ENST00000471834 SRGNP10124 158 aa6.03□□□□□ -1.44
SYNE1-220ENST00000471834 CAMK4Q16566 473 aa6.03□□□□□ -1.44
SYNE1-220ENST00000471834 CWF19L2Q2TBE0 894 aaKnown RBP6.03□□□□□ -1.44
SYNE1-220ENST00000471834 TMC6Q7Z403 805 aa6.03□□□□□ -1.44
SYNE1-220ENST00000471834 TLCD1Q96CP7 247 aa6.03□□□□□ -1.44
SYNE1-220ENST00000471834 BSDC1Q9NW68 430 aaPredicted RBP6.03□□□□□ -1.44
SYNE1-220ENST00000471834 DMGDHQ9UI17 866 aaKnown RBP6.03□□□□□ -1.44
SYNE1-220ENST00000471834 RWDD2AQ9UIY3 292 aa6.03□□□□□ -1.44
SYNE1-220ENST00000471834 DRG2P55039 364 aaKnown RBP6.03□□□□□ -1.44
SYNE1-220ENST00000471834 BYSLQ13895 437 aaKnown RBP6.03□□□□□ -1.44
SYNE1-220ENST00000471834 CENPPQ6IPU0 288 aa6.03□□□□□ -1.44
SYNE1-220ENST00000471834 LRIG3Q6UXM1 1119 aa6.03□□□□□ -1.44
SYNE1-220ENST00000471834 FMNL2Q96PY5 1086 aa6.03□□□□□ -1.44
SYNE1-220ENST00000471834 LACRTQ9GZZ8 138 aa6.03□□□□□ -1.44
SYNE1-220ENST00000471834 TMEM232C9JQI7 657 aa6.03□□□□□ -1.44
SYNE1-220ENST00000471834 MEFVO15553 781 aaPredicted RBP6.03□□□□□ -1.44
SYNE1-220ENST00000471834 CDKL5O76039 1030 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms