RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 NMT2O60551 498 aa14.1□□□□□ -0.15
VPS13D-204ENST00000469054 TBC1D8O95759 1140 aa14.1□□□□□ -0.15
VPS13D-204ENST00000469054 HOXA7P31268 230 aaPredicted RBP14.1□□□□□ -0.15
VPS13D-204ENST00000469054 NOVP48745 357 aa14.1□□□□□ -0.15
VPS13D-204ENST00000469054 PABPC4Q13310 644 aaKnown RBP eCLIP14.1□□□□□ -0.15
VPS13D-204ENST00000469054 CRHR2Q13324 411 aa14.1□□□□□ -0.15
VPS13D-204ENST00000469054 STOX1Q6ZVD7 989 aa14.1□□□□□ -0.15
VPS13D-204ENST00000469054 NCOA7Q8NI08 942 aa14.1□□□□□ -0.15
VPS13D-204ENST00000469054 LPAR1Q92633 364 aa14.1□□□□□ -0.15
VPS13D-204ENST00000469054 PARK7Q99497 189 aaKnown RBP14.1□□□□□ -0.15
VPS13D-204ENST00000469054 R3HDMLQ9H3Y0 253 aa14.1□□□□□ -0.15
VPS13D-204ENST00000469054 ZSWIM5Q9P217 1185 aa14.1□□□□□ -0.15
VPS13D-204ENST00000469054 TSKSQ9UJT2 592 aa14.1□□□□□ -0.15
VPS13D-204ENST00000469054 SYNPO2Q9UMS6 1093 aa14.1□□□□□ -0.15
VPS13D-204ENST00000469054 STX8Q9UNK0 236 aa14.1□□□□□ -0.15
VPS13D-204ENST00000469054 VCAM1P19320 739 aa14.09□□□□□ -0.15
VPS13D-204ENST00000469054 OSBPP22059 807 aa14.09□□□□□ -0.15
VPS13D-204ENST00000469054 CTCFP49711 727 aaPredicted RBP14.09□□□□□ -0.15
VPS13D-204ENST00000469054 KIAA1755Q5JYT7 1200 aa14.09□□□□□ -0.15
VPS13D-204ENST00000469054 IQCA1Q86XH1 822 aa14.09□□□□□ -0.15
VPS13D-204ENST00000469054 TTC14Q96N46 770 aa14.09□□□□□ -0.15
VPS13D-204ENST00000469054 GOPCQ9HD26 462 aa14.09□□□□□ -0.15
VPS13D-204ENST00000469054 PNMA3Q9UL41 463 aa14.09□□□□□ -0.15
VPS13D-204ENST00000469054 USP17L15C9J2P7 530 aa14.08□□□□□ -0.16
VPS13D-204ENST00000469054 USP17L13C9JLJ4 530 aa14.08□□□□□ -0.16
VPS13D-204ENST00000469054 USP17L11C9JVI0 530 aa14.08□□□□□ -0.16
VPS13D-204ENST00000469054 USP17L18D6R9N7 530 aa14.08□□□□□ -0.16
VPS13D-204ENST00000469054 USP17L22D6RA61 530 aa14.08□□□□□ -0.16
VPS13D-204ENST00000469054 USP17L17D6RBQ6 530 aa14.08□□□□□ -0.16
VPS13D-204ENST00000469054 USP17L19D6RCP7 530 aa14.08□□□□□ -0.16
VPS13D-204ENST00000469054 USP17L20D6RJB6 530 aa14.08□□□□□ -0.16
VPS13D-204ENST00000469054 F5H6K3 240 aa14.08□□□□□ -0.16
VPS13D-204ENST00000469054 TLR2O60603 784 aa14.08□□□□□ -0.16
VPS13D-204ENST00000469054 CYP2C8P10632 490 aa14.08□□□□□ -0.16
VPS13D-204ENST00000469054 HSPA8P11142 646 aaKnown RBP14.08□□□□□ -0.16
VPS13D-204ENST00000469054 KLRC3Q07444 240 aa14.08□□□□□ -0.16
VPS13D-204ENST00000469054 USP17L24Q0WX57 530 aa14.08□□□□□ -0.16
VPS13D-204ENST00000469054 CCDC178Q5BJE1 867 aa14.08□□□□□ -0.16
VPS13D-204ENST00000469054 RALYLQ86SE5 291 aaKnown RBP14.08□□□□□ -0.16
VPS13D-204ENST00000469054 DGKHQ86XP1 1220 aa14.08□□□□□ -0.16
VPS13D-204ENST00000469054 SPICE1Q8N0Z3 855 aa14.08□□□□□ -0.16
VPS13D-204ENST00000469054 LRRC47Q8N1G4 583 aaKnown RBP14.08□□□□□ -0.16
VPS13D-204ENST00000469054 ZKSCAN3Q9BRR0 538 aa14.08□□□□□ -0.16
VPS13D-204ENST00000469054 ASCC2Q9H1I8 757 aaPredicted RBP14.08□□□□□ -0.16
VPS13D-204ENST00000469054 RPAP3Q9H6T3 665 aaPredicted RBP14.08□□□□□ -0.16
VPS13D-204ENST00000469054 PHIPQ8WWQ0 1821 aa14.08□□□□□ -0.16
VPS13D-204ENST00000469054 ATAD5Q96QE3 1844 aa14.07□□□□□ -0.16
VPS13D-204ENST00000469054 GPR25O00155 361 aa14.07□□□□□ -0.16
VPS13D-204ENST00000469054 WDR46O15213 610 aaKnown RBP14.07□□□□□ -0.16
VPS13D-204ENST00000469054 RAD21O60216 631 aa14.07□□□□□ -0.16
VPS13D-204ENST00000469054 EIF5BO60841 1220 aaKnown RBP14.07□□□□□ -0.16
VPS13D-204ENST00000469054 NDUFB10O96000 172 aa14.07□□□□□ -0.16
VPS13D-204ENST00000469054 TOP1P11387 765 aaKnown RBP14.07□□□□□ -0.16
VPS13D-204ENST00000469054 ZKSCAN1P17029 563 aaPredicted RBP14.07□□□□□ -0.16
VPS13D-204ENST00000469054 HSPA4P34932 840 aa14.07□□□□□ -0.16
VPS13D-204ENST00000469054 LBX1P52954 281 aa14.07□□□□□ -0.16
VPS13D-204ENST00000469054 IRX3P78415 501 aaPredicted RBP14.07□□□□□ -0.16
VPS13D-204ENST00000469054 TSGA10IPQ3SY00 556 aa14.07□□□□□ -0.16
VPS13D-204ENST00000469054 NOM1Q5C9Z4 860 aaKnown RBP14.07□□□□□ -0.16
VPS13D-204ENST00000469054 RCSD1Q6JBY9 416 aa14.07□□□□□ -0.16
VPS13D-204ENST00000469054 CATSPERGQ6ZRH7 1159 aa14.07□□□□□ -0.16
VPS13D-204ENST00000469054 CYB5R4Q7L1T6 521 aa14.07□□□□□ -0.16
VPS13D-204ENST00000469054 RASEFQ8IZ41 740 aa14.07□□□□□ -0.16
VPS13D-204ENST00000469054 GMCL1P1Q8NEA9 526 aa14.07□□□□□ -0.16
VPS13D-204ENST00000469054 ANKS1AQ92625 1134 aa14.07□□□□□ -0.16
VPS13D-204ENST00000469054 KCNB2Q92953 911 aa14.07□□□□□ -0.16
VPS13D-204ENST00000469054 ZSCAN10Q96SZ4 725 aaPredicted RBP14.07□□□□□ -0.16
VPS13D-204ENST00000469054 USP26Q9BXU7 913 aa14.07□□□□□ -0.16
VPS13D-204ENST00000469054 PCNTO95613 3336 aa14.06□□□□□ -0.16
VPS13D-204ENST00000469054 SLFN13Q68D06 897 aa14.06□□□□□ -0.16
VPS13D-204ENST00000469054 C17orf99Q6UX52 265 aa14.06□□□□□ -0.16
VPS13D-204ENST00000469054 MB21D2Q8IYB1 491 aaPredicted RBP14.06□□□□□ -0.16
VPS13D-204ENST00000469054 SMCR8Q8TEV9 937 aaPredicted RBP14.06□□□□□ -0.16
VPS13D-204ENST00000469054 P2RX7Q99572 595 aaKnown RBP14.06□□□□□ -0.16
VPS13D-204ENST00000469054 TMEM47Q9BQJ4 181 aa14.06□□□□□ -0.16
VPS13D-204ENST00000469054 UBAC1Q9BSL1 405 aa14.06□□□□□ -0.16
VPS13D-204ENST00000469054 KRT32Q14532 448 aa14.05□□□□□ -0.16
VPS13D-204ENST00000469054 COG2Q14746 738 aa14.05□□□□□ -0.16
VPS13D-204ENST00000469054 C8orf34Q49A92 452 aa14.05□□□□□ -0.16
VPS13D-204ENST00000469054 NEK1Q96PY6 1258 aa14.05□□□□□ -0.16
VPS13D-204ENST00000469054 TANGO6Q9C0B7 1094 aa14.05□□□□□ -0.16
VPS13D-204ENST00000469054 CPA4Q9UI42 421 aa14.05□□□□□ -0.16
VPS13D-204ENST00000469054 TNKSO95271 1327 aa14.05□□□□□ -0.16
VPS13D-204ENST00000469054 ADGRA2Q96PE1 1338 aa14.05□□□□□ -0.16
VPS13D-204ENST00000469054 GREB1LQ9C091 1923 aaPredicted RBP14.04□□□□□ -0.16
VPS13D-204ENST00000469054 FKTNO75072 461 aa14.04□□□□□ -0.16
VPS13D-204ENST00000469054 BCRP11274 1271 aa14.04□□□□□ -0.16
VPS13D-204ENST00000469054 GCLCP48506 637 aaPredicted RBP14.04□□□□□ -0.16
VPS13D-204ENST00000469054 ANTXR2P58335 489 aa14.04□□□□□ -0.16
VPS13D-204ENST00000469054 HERVK_113P62684 666 aa14.04□□□□□ -0.16
VPS13D-204ENST00000469054 SEC23AQ15436 765 aa14.04□□□□□ -0.16
VPS13D-204ENST00000469054 FAM83BQ5T0W9 1011 aa14.04□□□□□ -0.16
VPS13D-204ENST00000469054 CHST3Q7LGC8 479 aa14.04□□□□□ -0.16
VPS13D-204ENST00000469054 ENAHQ8N8S7 591 aaPredicted RBP14.04□□□□□ -0.16
VPS13D-204ENST00000469054 GTF3C2Q8WUA4 911 aaPredicted RBP14.04□□□□□ -0.16
VPS13D-204ENST00000469054 ZNF296Q8WUU4 475 aaPredicted RBP14.04□□□□□ -0.16
VPS13D-204ENST00000469054 NUP88Q99567 741 aaPredicted RBP14.04□□□□□ -0.16
VPS13D-204ENST00000469054 HOXC10Q9NYD6 342 aa14.04□□□□□ -0.16
VPS13D-204ENST00000469054 ERICH2A1L162 156 aa14.03□□□□□ -0.16
VPS13D-204ENST00000469054 IFIT3O14879 490 aaKnown RBP14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms