RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 LPIN3Q9BQK8 851 aa6.82□□□□□ -1.32
VPS41-211ENST00000466017 PLA2G12BQ9BX93 195 aa6.82□□□□□ -1.32
VPS41-211ENST00000466017 DCTPP1Q9H773 170 aa6.82□□□□□ -1.32
VPS41-211ENST00000466017 CCNL1Q9UK58 526 aaPredicted RBP6.82□□□□□ -1.32
VPS41-211ENST00000466017 MYH14Q7Z406 1995 aaKnown RBP6.81□□□□□ -1.32
VPS41-211ENST00000466017 PHF20L1A8MW92 1017 aa6.81□□□□□ -1.32
VPS41-211ENST00000466017 GNB5O14775 395 aa6.81□□□□□ -1.32
VPS41-211ENST00000466017 HMMRO75330 724 aa6.81□□□□□ -1.32
VPS41-211ENST00000466017 CAMTA2O94983 1202 aa6.81□□□□□ -1.32
VPS41-211ENST00000466017 MAP3K6O95382 1288 aa6.81□□□□□ -1.32
VPS41-211ENST00000466017 PCCAP05165 728 aaPredicted RBP6.81□□□□□ -1.32
VPS41-211ENST00000466017 EIF1AXP47813 144 aaKnown RBP6.81□□□□□ -1.32
VPS41-211ENST00000466017 AFF1P51825 1210 aaKnown RBP6.81□□□□□ -1.32
VPS41-211ENST00000466017 RABL6Q3YEC7 729 aaPredicted RBP6.81□□□□□ -1.32
VPS41-211ENST00000466017 PARP10Q53GL7 1025 aa6.81□□□□□ -1.32
VPS41-211ENST00000466017 GPAT2Q6NUI2 795 aa6.81□□□□□ -1.32
VPS41-211ENST00000466017 PODNQ7Z5L7 613 aa6.81□□□□□ -1.32
VPS41-211ENST00000466017 TRPM4Q8TD43 1214 aa6.81□□□□□ -1.32
VPS41-211ENST00000466017 SSH3Q8TE77 659 aa6.81□□□□□ -1.32
VPS41-211ENST00000466017 EDEM1Q92611 657 aa6.81□□□□□ -1.32
VPS41-211ENST00000466017 NSUN5Q96P11 429 aaKnown RBP6.81□□□□□ -1.32
VPS41-211ENST00000466017 CWC25Q9NXE8 425 aaPredicted RBP6.81□□□□□ -1.32
VPS41-211ENST00000466017 TLR7Q9NYK1 1049 aaKnown RBP6.81□□□□□ -1.32
VPS41-211ENST00000466017 C9orf78Q9NZ63 289 aaPredicted RBP6.81□□□□□ -1.32
VPS41-211ENST00000466017 TMEM63CQ9P1W3 806 aa6.81□□□□□ -1.32
VPS41-211ENST00000466017 CNTN3Q9P232 1028 aa6.81□□□□□ -1.32
VPS41-211ENST00000466017 NARFQ9UHQ1 456 aa6.81□□□□□ -1.32
VPS41-211ENST00000466017 NOP58Q9Y2X3 529 aaKnown RBP6.81□□□□□ -1.32
VPS41-211ENST00000466017 COL5A3P25940 1745 aaPredicted RBP6.81□□□□□ -1.32
VPS41-211ENST00000466017 CDHR2Q9BYE9 1310 aa6.8□□□□□ -1.32
VPS41-211ENST00000466017 NBPF7P0C2Y1 421 aaPredicted RBP6.8□□□□□ -1.32
VPS41-211ENST00000466017 HSP90B1P14625 803 aaKnown RBP6.8□□□□□ -1.32
VPS41-211ENST00000466017 EPB42P16452 691 aa6.8□□□□□ -1.32
VPS41-211ENST00000466017 CHRNA4P43681 627 aa6.8□□□□□ -1.32
VPS41-211ENST00000466017 HLFQ16534 295 aa6.8□□□□□ -1.32
VPS41-211ENST00000466017 TXNRD1Q16881 649 aa6.8□□□□□ -1.32
VPS41-211ENST00000466017 CWF19L2Q2TBE0 894 aaKnown RBP6.8□□□□□ -1.32
VPS41-211ENST00000466017 FAM35AQ86V20 835 aa6.8□□□□□ -1.32
VPS41-211ENST00000466017 FLAD1Q8NFF5 587 aa6.8□□□□□ -1.32
VPS41-211ENST00000466017 ZNF652Q9Y2D9 606 aa6.8□□□□□ -1.32
VPS41-211ENST00000466017 TAF1LQ8IZX4 1826 aa6.79□□□□□ -1.32
VPS41-211ENST00000466017 RNF225M0QZC1 329 aaPredicted RBP6.79□□□□□ -1.32
VPS41-211ENST00000466017 FZD6O60353 706 aa6.79□□□□□ -1.32
VPS41-211ENST00000466017 RAB11FIP3O75154 756 aa6.79□□□□□ -1.32
VPS41-211ENST00000466017 APBA3O96018 575 aa6.79□□□□□ -1.32
VPS41-211ENST00000466017 ABL1P00519 1130 aa6.79□□□□□ -1.32
VPS41-211ENST00000466017 PROCP04070 461 aa6.79□□□□□ -1.32
VPS41-211ENST00000466017 CSF1RP07333 972 aa6.79□□□□□ -1.32
VPS41-211ENST00000466017 PIP4K2AP48426 406 aaPredicted RBP6.79□□□□□ -1.32
VPS41-211ENST00000466017 DNM1Q05193 864 aaKnown RBP6.79□□□□□ -1.32
VPS41-211ENST00000466017 HSP90AB4PQ58FF6 505 aa6.79□□□□□ -1.32
VPS41-211ENST00000466017 SLC10A5Q5PT55 438 aa6.79□□□□□ -1.32
VPS41-211ENST00000466017 TRAPPC3LQ5T215 181 aa6.79□□□□□ -1.32
VPS41-211ENST00000466017 CD163Q86VB7 1156 aa6.79□□□□□ -1.32
VPS41-211ENST00000466017 NLRP10Q86W26 655 aa6.79□□□□□ -1.32
VPS41-211ENST00000466017 ZBTB38Q8NAP3 1195 aaPredicted RBP6.79□□□□□ -1.32
VPS41-211ENST00000466017 KAZALD1Q96I82 304 aa6.79□□□□□ -1.32
VPS41-211ENST00000466017 JPH1Q9HDC5 661 aaPredicted RBP6.79□□□□□ -1.32
VPS41-211ENST00000466017 RGPD3A6NKT7 1758 aaPredicted RBP6.78□□□□□ -1.32
VPS41-211ENST00000466017 RGPD4Q7Z3J3 1758 aa6.78□□□□□ -1.32
VPS41-211ENST00000466017 ARFGEF2Q9Y6D5 1785 aa6.78□□□□□ -1.32
VPS41-211ENST00000466017 C1QTNF9BB2RNN3 333 aa6.78□□□□□ -1.32
VPS41-211ENST00000466017 PDGFAP04085 211 aa6.78□□□□□ -1.32
VPS41-211ENST00000466017 ACPPP15309 386 aa6.78□□□□□ -1.32
VPS41-211ENST00000466017 NPR3P17342 541 aa6.78□□□□□ -1.32
VPS41-211ENST00000466017 NUCB1Q02818 461 aa6.78□□□□□ -1.32
VPS41-211ENST00000466017 GRIK4Q16099 956 aa6.78□□□□□ -1.32
VPS41-211ENST00000466017 NOM1Q5C9Z4 860 aaKnown RBP6.78□□□□□ -1.32
VPS41-211ENST00000466017 PPP1R42Q7Z4L9 355 aa6.78□□□□□ -1.32
VPS41-211ENST00000466017 PIK3R5Q8WYR1 880 aa6.78□□□□□ -1.32
VPS41-211ENST00000466017 SUCLG2Q96I99 432 aa6.78□□□□□ -1.32
VPS41-211ENST00000466017 CAMKK2Q96RR4 588 aa6.78□□□□□ -1.32
VPS41-211ENST00000466017 POLIQ9UNA4 740 aa6.78□□□□□ -1.32
VPS41-211ENST00000466017 LRRFIP2Q9Y608 721 aaKnown RBP6.78□□□□□ -1.32
VPS41-211ENST00000466017 NUP188Q5SRE5 1749 aa6.78□□□□□ -1.32
VPS41-211ENST00000466017 PNMA6EA0A0J9YXQ4 647 aa6.77□□□□□ -1.33
VPS41-211ENST00000466017 PDE8AO60658 829 aa6.77□□□□□ -1.33
VPS41-211ENST00000466017 TRPA1O75762 1119 aa6.77□□□□□ -1.33
VPS41-211ENST00000466017 BAG6P46379 1132 aa6.77□□□□□ -1.33
VPS41-211ENST00000466017 GPLD1P80108 840 aa6.77□□□□□ -1.33
VPS41-211ENST00000466017 FOXO4P98177 505 aa6.77□□□□□ -1.33
VPS41-211ENST00000466017 DMRTC2Q8IXT2 367 aaPredicted RBP6.77□□□□□ -1.33
VPS41-211ENST00000466017 SMG9Q9H0W8 520 aaKnown RBP6.77□□□□□ -1.33
VPS41-211ENST00000466017 COPRSQ9NQ92 184 aa6.77□□□□□ -1.33
VPS41-211ENST00000466017 PRDM6Q9NQX0 595 aa6.77□□□□□ -1.33
VPS41-211ENST00000466017 USTQ9Y2C2 406 aa6.77□□□□□ -1.33
VPS41-211ENST00000466017 NUP98P52948 1817 aa6.77□□□□□ -1.33
VPS41-211ENST00000466017 USP42Q9H9J4 1324 aaKnown RBP6.76□□□□□ -1.33
VPS41-211ENST00000466017 C4BP0C0L5 1744 aa6.76□□□□□ -1.33
VPS41-211ENST00000466017 SRGAP3O43295 1099 aa6.76□□□□□ -1.33
VPS41-211ENST00000466017 TM4SF1P30408 202 aa6.76□□□□□ -1.33
VPS41-211ENST00000466017 RFC4P35249 363 aa6.76□□□□□ -1.33
VPS41-211ENST00000466017 RFX5P48382 616 aaPredicted RBP6.76□□□□□ -1.33
VPS41-211ENST00000466017 ATP11AP98196 1134 aa6.76□□□□□ -1.33
VPS41-211ENST00000466017 SUSD4Q5VX71 490 aa6.76□□□□□ -1.33
VPS41-211ENST00000466017 ERICH6Q7L0X2 663 aa6.76□□□□□ -1.33
VPS41-211ENST00000466017 CHD1LQ86WJ1 897 aa6.76□□□□□ -1.33
VPS41-211ENST00000466017 ERC1Q8IUD2 1116 aa6.76□□□□□ -1.33
VPS41-211ENST00000466017 C1orf127Q8N9H9 656 aa6.76□□□□□ -1.33
VPS41-211ENST00000466017 KIF1BPQ96EK5 621 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms