RNA–Protein interactions for RNA: ENST00000464493.5

SQSTM1-205, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-205ENST00000464493 SMCR8Q8TEV9 937 aaPredicted RBP17.16■□□□□ 0.34
SQSTM1-205ENST00000464493 LPAR1Q92633 364 aa17.16■□□□□ 0.34
SQSTM1-205ENST00000464493 ESR2Q92731 530 aa17.16■□□□□ 0.34
SQSTM1-205ENST00000464493 MKL1Q969V6 931 aa17.16■□□□□ 0.34
SQSTM1-205ENST00000464493 LSG1Q9H089 658 aaKnown RBP17.16■□□□□ 0.34
SQSTM1-205ENST00000464493 ANO2Q9NQ90 1003 aa17.16■□□□□ 0.34
SQSTM1-205ENST00000464493 IL17RBQ9NRM6 502 aa17.16■□□□□ 0.34
SQSTM1-205ENST00000464493 CPA4Q9UI42 421 aa17.16■□□□□ 0.34
SQSTM1-205ENST00000464493 ADGRA2Q96PE1 1338 aa17.16■□□□□ 0.34
SQSTM1-205ENST00000464493 CYP21A2P08686 494 aa17.15■□□□□ 0.34
SQSTM1-205ENST00000464493 NT5C2P49902 561 aa17.15■□□□□ 0.34
SQSTM1-205ENST00000464493 KIAA1755Q5JYT7 1200 aa17.15■□□□□ 0.34
SQSTM1-205ENST00000464493 CATSPERGQ6ZRH7 1159 aa17.15■□□□□ 0.34
SQSTM1-205ENST00000464493 P2RX7Q99572 595 aaKnown RBP17.15■□□□□ 0.34
SQSTM1-205ENST00000464493 RPAP3Q9H6T3 665 aaPredicted RBP17.15■□□□□ 0.34
SQSTM1-205ENST00000464493 GOPCQ9HD26 462 aa17.15■□□□□ 0.34
SQSTM1-205ENST00000464493 RBM8AQ9Y5S9 174 aaKnown RBP17.15■□□□□ 0.34
SQSTM1-205ENST00000464493 NEDD4P46934 1319 aa17.15■□□□□ 0.34
SQSTM1-205ENST00000464493 MYH4Q9Y623 1939 aa17.14■□□□□ 0.33
SQSTM1-205ENST00000464493 RAD21O60216 631 aa17.14■□□□□ 0.33
SQSTM1-205ENST00000464493 NMT2O60551 498 aa17.14■□□□□ 0.33
SQSTM1-205ENST00000464493 COL13A1Q5TAT6 717 aaPredicted RBP17.14■□□□□ 0.33
SQSTM1-205ENST00000464493 SPICE1Q8N0Z3 855 aa17.14■□□□□ 0.33
SQSTM1-205ENST00000464493 KRT23Q9C075 422 aa17.14■□□□□ 0.33
SQSTM1-205ENST00000464493 CNNM2Q9H8M5 875 aa17.14■□□□□ 0.33
SQSTM1-205ENST00000464493 TCP11L1Q9NUJ3 509 aa17.14■□□□□ 0.33
SQSTM1-205ENST00000464493 SYNPO2Q9UMS6 1093 aa17.14■□□□□ 0.33
SQSTM1-205ENST00000464493 STX8Q9UNK0 236 aa17.14■□□□□ 0.33
SQSTM1-205ENST00000464493 B4E1Z4 1266 aa17.13■□□□□ 0.33
SQSTM1-205ENST00000464493 F5H6K3 240 aa17.13■□□□□ 0.33
SQSTM1-205ENST00000464493 BCRP11274 1271 aa17.13■□□□□ 0.33
SQSTM1-205ENST00000464493 GCLCP48506 637 aaPredicted RBP17.13■□□□□ 0.33
SQSTM1-205ENST00000464493 KLRC3Q07444 240 aa17.13■□□□□ 0.33
SQSTM1-205ENST00000464493 NKX2-3Q8TAU0 364 aa17.13■□□□□ 0.33
SQSTM1-205ENST00000464493 ERO1AQ96HE7 468 aa17.13■□□□□ 0.33
SQSTM1-205ENST00000464493 WDR46O15213 610 aaKnown RBP17.12■□□□□ 0.33
SQSTM1-205ENST00000464493 KDM4AO75164 1064 aa17.12■□□□□ 0.33
SQSTM1-205ENST00000464493 NOVP48745 357 aa17.12■□□□□ 0.33
SQSTM1-205ENST00000464493 HERVK_113P62684 666 aa17.12■□□□□ 0.33
SQSTM1-205ENST00000464493 TRDNQ13061 729 aa17.12■□□□□ 0.33
SQSTM1-205ENST00000464493 LRRC47Q8N1G4 583 aaKnown RBP17.12■□□□□ 0.33
SQSTM1-205ENST00000464493 ANKRD13CQ8N6S4 541 aa17.12■□□□□ 0.33
SQSTM1-205ENST00000464493 TANGO6Q9C0B7 1094 aa17.12■□□□□ 0.33
SQSTM1-205ENST00000464493 ZSWIM5Q9P217 1185 aa17.12■□□□□ 0.33
SQSTM1-205ENST00000464493 NDUFB10O96000 172 aa17.11■□□□□ 0.33
SQSTM1-205ENST00000464493 LACTBP83111 547 aaPredicted RBP17.11■□□□□ 0.33
SQSTM1-205ENST00000464493 COG2Q14746 738 aa17.11■□□□□ 0.33
SQSTM1-205ENST00000464493 KIF22Q14807 665 aa17.11■□□□□ 0.33
SQSTM1-205ENST00000464493 NECTIN1Q15223 517 aa17.11■□□□□ 0.33
SQSTM1-205ENST00000464493 IQCA1Q86XH1 822 aa17.11■□□□□ 0.33
SQSTM1-205ENST00000464493 GMCL1P1Q8NEA9 526 aa17.11■□□□□ 0.33
SQSTM1-205ENST00000464493 CD99L2Q8TCZ2 262 aa17.11■□□□□ 0.33
SQSTM1-205ENST00000464493 GTF3C2Q8WUA4 911 aaPredicted RBP17.11■□□□□ 0.33
SQSTM1-205ENST00000464493 TTC14Q96N46 770 aa17.11■□□□□ 0.33
SQSTM1-205ENST00000464493 HOXC10Q9NYD6 342 aa17.11■□□□□ 0.33
SQSTM1-205ENST00000464493 E7EWF7 191 aa17.1■□□□□ 0.33
SQSTM1-205ENST00000464493 ARHGEF6Q15052 776 aa17.1■□□□□ 0.33
SQSTM1-205ENST00000464493 FAM110CQ1W6H9 321 aa17.1■□□□□ 0.33
SQSTM1-205ENST00000464493 CCDC178Q5BJE1 867 aa17.1■□□□□ 0.33
SQSTM1-205ENST00000464493 SLFN13Q68D06 897 aa17.1■□□□□ 0.33
SQSTM1-205ENST00000464493 CTU1Q7Z7A3 348 aaKnown RBP17.1■□□□□ 0.33
SQSTM1-205ENST00000464493 ZKSCAN3Q9BRR0 538 aa17.1■□□□□ 0.33
SQSTM1-205ENST00000464493 TAF6LQ9Y6J9 622 aa17.1■□□□□ 0.33
SQSTM1-205ENST00000464493 SLC27A2O14975 620 aa17.09■□□□□ 0.33
SQSTM1-205ENST00000464493 FLOT1O75955 427 aa17.09■□□□□ 0.33
SQSTM1-205ENST00000464493 TOP1P11387 765 aaKnown RBP17.09■□□□□ 0.33
SQSTM1-205ENST00000464493 FAM83BQ5T0W9 1011 aa17.09■□□□□ 0.33
SQSTM1-205ENST00000464493 CREB3L3Q68CJ9 461 aa17.09■□□□□ 0.33
SQSTM1-205ENST00000464493 NCOA7Q8NI08 942 aa17.09■□□□□ 0.33
SQSTM1-205ENST00000464493 TMEM47Q9BQJ4 181 aa17.09■□□□□ 0.33
SQSTM1-205ENST00000464493 RBPJLQ9UBG7 517 aa17.09■□□□□ 0.33
SQSTM1-205ENST00000464493 SPDYE16A6NNV3 312 aaPredicted RBP17.08■□□□□ 0.32
SQSTM1-205ENST00000464493 REC8O95072 547 aa17.08■□□□□ 0.32
SQSTM1-205ENST00000464493 DSG3P32926 999 aa17.08■□□□□ 0.32
SQSTM1-205ENST00000464493 CAP1Q01518 475 aa17.08■□□□□ 0.32
SQSTM1-205ENST00000464493 RNF20Q5VTR2 975 aa17.08■□□□□ 0.32
SQSTM1-205ENST00000464493 RCSD1Q6JBY9 416 aa17.08■□□□□ 0.32
SQSTM1-205ENST00000464493 POTEEQ6S8J3 1075 aa17.08■□□□□ 0.32
SQSTM1-205ENST00000464493 LBX2Q6XYB7 198 aa17.08■□□□□ 0.32
SQSTM1-205ENST00000464493 STOX1Q6ZVD7 989 aa17.08■□□□□ 0.32
SQSTM1-205ENST00000464493 RALYLQ86SE5 291 aaKnown RBP17.08■□□□□ 0.32
SQSTM1-205ENST00000464493 DGKHQ86XP1 1220 aa17.08■□□□□ 0.32
SQSTM1-205ENST00000464493 GPRC5AQ8NFJ5 357 aa17.08■□□□□ 0.32
SQSTM1-205ENST00000464493 ZSCAN10Q96SZ4 725 aaPredicted RBP17.08■□□□□ 0.32
SQSTM1-205ENST00000464493 NUP88Q99567 741 aaPredicted RBP17.08■□□□□ 0.32
SQSTM1-205ENST00000464493 ARHGAP39Q9C0H5 1083 aa17.08■□□□□ 0.32
SQSTM1-205ENST00000464493 EFCC1Q9HA90 598 aa17.08■□□□□ 0.32
SQSTM1-205ENST00000464493 TXNRD2Q9NNW7 524 aa17.08■□□□□ 0.32
SQSTM1-205ENST00000464493 MORF4L1Q9UBU8 362 aa17.08■□□□□ 0.32
SQSTM1-205ENST00000464493 TRIM17Q9Y577 477 aa17.08■□□□□ 0.32
SQSTM1-205ENST00000464493 MYPNQ86TC9 1320 aa17.07■□□□□ 0.32
SQSTM1-205ENST00000464493 PEX10O60683 326 aa17.07■□□□□ 0.32
SQSTM1-205ENST00000464493 ECM2O94769 699 aaPredicted RBP17.07■□□□□ 0.32
SQSTM1-205ENST00000464493 BMP3P12645 472 aa17.07■□□□□ 0.32
SQSTM1-205ENST00000464493 PSMC4P43686 418 aa17.07■□□□□ 0.32
SQSTM1-205ENST00000464493 CYB5R4Q7L1T6 521 aa17.07■□□□□ 0.32
SQSTM1-205ENST00000464493 OTOP1Q7RTM1 612 aa17.07■□□□□ 0.32
SQSTM1-205ENST00000464493 ANKS1AQ92625 1134 aa17.07■□□□□ 0.32
SQSTM1-205ENST00000464493 UBAC1Q9BSL1 405 aa17.07■□□□□ 0.32
SQSTM1-205ENST00000464493 PAGR1Q9BTK6 254 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms