RNA–Protein interactions for RNA: ENST00000463988.1

SNRNP40-203, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-203ENST00000463988 OGDHLQ9ULD0 1010 aa17.27■□□□□ 0.36
SNRNP40-203ENST00000463988 TMX2Q9Y320 296 aa17.27■□□□□ 0.36
SNRNP40-203ENST00000463988 AKR1B1P15121 316 aa17.26■□□□□ 0.35
SNRNP40-203ENST00000463988 PTPREP23469 700 aa17.26■□□□□ 0.35
SNRNP40-203ENST00000463988 ICA1Q05084 483 aa17.26■□□□□ 0.35
SNRNP40-203ENST00000463988 CACNB2Q08289 660 aaPredicted RBP17.26■□□□□ 0.35
SNRNP40-203ENST00000463988 GIMAP6Q6P9H5 292 aa17.26■□□□□ 0.35
SNRNP40-203ENST00000463988 CTR9Q6PD62 1173 aa17.26■□□□□ 0.35
SNRNP40-203ENST00000463988 SIAH1Q8IUQ4 282 aa17.26■□□□□ 0.35
SNRNP40-203ENST00000463988 MB21D1Q8N884 522 aa17.26■□□□□ 0.35
SNRNP40-203ENST00000463988 STRBPQ96SI9 672 aaKnown RBP17.26■□□□□ 0.35
SNRNP40-203ENST00000463988 BAZ2AQ9UIF9 1905 aaKnown RBP17.25■□□□□ 0.35
SNRNP40-203ENST00000463988 CYP2D7A0A087X1C5 515 aa17.25■□□□□ 0.35
SNRNP40-203ENST00000463988 EVI5O60447 810 aa17.25■□□□□ 0.35
SNRNP40-203ENST00000463988 ZFYP08048 801 aaPredicted RBP17.25■□□□□ 0.35
SNRNP40-203ENST00000463988 HOXC6P09630 235 aa17.25■□□□□ 0.35
SNRNP40-203ENST00000463988 FXR1P51114 621 aaKnown RBP eCLIP17.25■□□□□ 0.35
SNRNP40-203ENST00000463988 GRB14Q14449 540 aa17.25■□□□□ 0.35
SNRNP40-203ENST00000463988 SBK1Q52WX2 424 aa17.25■□□□□ 0.35
SNRNP40-203ENST00000463988 TANGO6Q9C0B7 1094 aa17.25■□□□□ 0.35
SNRNP40-203ENST00000463988 NBPF3Q9H094 633 aa17.25■□□□□ 0.35
SNRNP40-203ENST00000463988 VCPKMTQ9H867 229 aa17.25■□□□□ 0.35
SNRNP40-203ENST00000463988 ARPP21Q9UBL0 812 aaPredicted RBP17.25■□□□□ 0.35
SNRNP40-203ENST00000463988 IVNS1ABPQ9Y6Y0 642 aa17.25■□□□□ 0.35
SNRNP40-203ENST00000463988 MYH8P13535 1937 aa17.24■□□□□ 0.35
SNRNP40-203ENST00000463988 RNF113AO15541 343 aaKnown RBP17.24■□□□□ 0.35
SNRNP40-203ENST00000463988 MNX1P50219 401 aaPredicted RBP17.24■□□□□ 0.35
SNRNP40-203ENST00000463988 CCL14Q16627 93 aa17.24■□□□□ 0.35
SNRNP40-203ENST00000463988 KIAA1755Q5JYT7 1200 aa17.24■□□□□ 0.35
SNRNP40-203ENST00000463988 CHRDL2Q6WN34 429 aa17.24■□□□□ 0.35
SNRNP40-203ENST00000463988 SHCBP1Q8NEM2 672 aa17.24■□□□□ 0.35
SNRNP40-203ENST00000463988 DIS3LQ8TF46 1054 aaKnown RBP17.24■□□□□ 0.35
SNRNP40-203ENST00000463988 APPBP2Q92624 585 aa17.24■□□□□ 0.35
SNRNP40-203ENST00000463988 KANSL2Q9H9L4 492 aa17.24■□□□□ 0.35
SNRNP40-203ENST00000463988 RANBP2P49792 3224 aaKnown RBP17.24■□□□□ 0.35
SNRNP40-203ENST00000463988 TTC41PQ6P2S7 1318 aa17.23■□□□□ 0.35
SNRNP40-203ENST00000463988 SMIM22K7EJ46 135 aa17.23■□□□□ 0.35
SNRNP40-203ENST00000463988 STRNO43815 780 aa17.23■□□□□ 0.35
SNRNP40-203ENST00000463988 DSG3P32926 999 aa17.23■□□□□ 0.35
SNRNP40-203ENST00000463988 LRRFIP1Q32MZ4 808 aaKnown RBP17.23■□□□□ 0.35
SNRNP40-203ENST00000463988 WDR78Q5VTH9 848 aa17.23■□□□□ 0.35
SNRNP40-203ENST00000463988 MFSD14CQ5VZR4 134 aa17.23■□□□□ 0.35
SNRNP40-203ENST00000463988 SPATC1LQ9H0A9 340 aa17.23■□□□□ 0.35
SNRNP40-203ENST00000463988 PRO3102Q9H379 93 aa17.23■□□□□ 0.35
SNRNP40-203ENST00000463988 PCDHB15Q9Y5E8 787 aa17.23■□□□□ 0.35
SNRNP40-203ENST00000463988 RLFQ13129 1914 aa17.22■□□□□ 0.35
SNRNP40-203ENST00000463988 GSG1L2A8MUP6 293 aa17.22■□□□□ 0.35
SNRNP40-203ENST00000463988 WDR46O15213 610 aaKnown RBP17.22■□□□□ 0.35
SNRNP40-203ENST00000463988 GNAT2P19087 354 aa17.22■□□□□ 0.35
SNRNP40-203ENST00000463988 LHX8Q68G74 356 aa17.22■□□□□ 0.35
SNRNP40-203ENST00000463988 OSBP2Q969R2 916 aa17.22■□□□□ 0.35
SNRNP40-203ENST00000463988 MOV10L1Q9BXT6 1211 aaKnown RBP17.22■□□□□ 0.35
SNRNP40-203ENST00000463988 C11orf49Q9H6J7 331 aa17.22■□□□□ 0.35
SNRNP40-203ENST00000463988 ERC2O15083 957 aa17.21■□□□□ 0.35
SNRNP40-203ENST00000463988 FLOT1O75955 427 aa17.21■□□□□ 0.35
SNRNP40-203ENST00000463988 IGHA2P01877 340 aa17.21■□□□□ 0.35
SNRNP40-203ENST00000463988 EEF2P13639 858 aaKnown RBP17.21■□□□□ 0.35
SNRNP40-203ENST00000463988 ATP2B2Q01814 1243 aa17.21■□□□□ 0.35
SNRNP40-203ENST00000463988 CLEC10AQ8IUN9 316 aa17.21■□□□□ 0.35
SNRNP40-203ENST00000463988 SPICE1Q8N0Z3 855 aa17.21■□□□□ 0.35
SNRNP40-203ENST00000463988 MROH8Q9H579 483 aa17.21■□□□□ 0.35
SNRNP40-203ENST00000463988 RBM27Q9P2N5 1060 aaKnown RBP17.21■□□□□ 0.35
SNRNP40-203ENST00000463988 ROBO3Q96MS0 1386 aa17.2■□□□□ 0.34
SNRNP40-203ENST00000463988 CCND3P30281 292 aaPredicted RBP17.2■□□□□ 0.34
SNRNP40-203ENST00000463988 TSHZ3Q63HK5 1081 aa17.2■□□□□ 0.34
SNRNP40-203ENST00000463988 ABRAQ8N0Z2 381 aa17.2■□□□□ 0.34
SNRNP40-203ENST00000463988 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.2■□□□□ 0.34
SNRNP40-203ENST00000463988 GOPCQ9HD26 462 aa17.2■□□□□ 0.34
SNRNP40-203ENST00000463988 FLRT1Q9NZU1 646 aa17.2■□□□□ 0.34
SNRNP40-203ENST00000463988 ADAMTS5Q9UNA0 930 aa17.2■□□□□ 0.34
SNRNP40-203ENST00000463988 A0A0G2JMZ2 1700 aa17.2■□□□□ 0.34
SNRNP40-203ENST00000463988 ZNF236Q9UL36 1845 aa17.19■□□□□ 0.34
SNRNP40-203ENST00000463988 A0A1W2PPC1 479 aa17.19■□□□□ 0.34
SNRNP40-203ENST00000463988 GPAA1O43292 621 aa17.19■□□□□ 0.34
SNRNP40-203ENST00000463988 MSCO60682 206 aa17.19■□□□□ 0.34
SNRNP40-203ENST00000463988 COL6A1P12109 1028 aa17.19■□□□□ 0.34
SNRNP40-203ENST00000463988 ERCC3P19447 782 aa17.19■□□□□ 0.34
SNRNP40-203ENST00000463988 RASA1P20936 1047 aa17.19■□□□□ 0.34
SNRNP40-203ENST00000463988 RRP1P56182 461 aaKnown RBP17.19■□□□□ 0.34
SNRNP40-203ENST00000463988 OLFML2BQ68BL8 750 aa17.19■□□□□ 0.34
SNRNP40-203ENST00000463988 DPP9Q86TI2 863 aa17.19■□□□□ 0.34
SNRNP40-203ENST00000463988 NPLOC4Q8TAT6 608 aa17.19■□□□□ 0.34
SNRNP40-203ENST00000463988 PI4K2BQ8TCG2 481 aa17.19■□□□□ 0.34
SNRNP40-203ENST00000463988 ATG4CQ96DT6 458 aa17.19■□□□□ 0.34
SNRNP40-203ENST00000463988 ZNF287Q9HBT7 754 aa17.19■□□□□ 0.34
SNRNP40-203ENST00000463988 SLC5A4Q9NY91 659 aa17.19■□□□□ 0.34
SNRNP40-203ENST00000463988 PATL2C9JE40 543 aaKnown RBP17.18■□□□□ 0.34
SNRNP40-203ENST00000463988 SLC25A27O95847 323 aa17.18■□□□□ 0.34
SNRNP40-203ENST00000463988 ADORA2AP29274 412 aa17.18■□□□□ 0.34
SNRNP40-203ENST00000463988 MKNK2Q9HBH9 465 aa17.18■□□□□ 0.34
SNRNP40-203ENST00000463988 NYAP2Q9P242 653 aa17.18■□□□□ 0.34
SNRNP40-203ENST00000463988 ALPK3Q96L96 1907 aa17.17■□□□□ 0.34
SNRNP40-203ENST00000463988 MINDY4BA8MYZ0 360 aa17.17■□□□□ 0.34
SNRNP40-203ENST00000463988 EPB41L4AQ9HCS5 686 aaPredicted RBP17.17■□□□□ 0.34
SNRNP40-203ENST00000463988 DDX20Q9UHI6 824 aaKnown RBP17.17■□□□□ 0.34
SNRNP40-203ENST00000463988 GREB1LQ9C091 1923 aaPredicted RBP17.17■□□□□ 0.34
SNRNP40-203ENST00000463988 PFASO15067 1338 aa17.17■□□□□ 0.34
SNRNP40-203ENST00000463988 M0R2C6 588 aa17.16■□□□□ 0.34
SNRNP40-203ENST00000463988 MX1P20591 662 aa17.16■□□□□ 0.34
SNRNP40-203ENST00000463988 CYP2C19P33261 490 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms