RNA–Protein interactions for RNA: ENST00000462613.1

SF3B1-206, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 3

Gene SF3B1, Length 141 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-206ENST00000462613 USP17L18D6R9N7 530 aa7.49□□□□□ -1.21
SF3B1-206ENST00000462613 USP17L22D6RA61 530 aa7.49□□□□□ -1.21
SF3B1-206ENST00000462613 USP17L17D6RBQ6 530 aa7.49□□□□□ -1.21
SF3B1-206ENST00000462613 USP17L19D6RCP7 530 aa7.49□□□□□ -1.21
SF3B1-206ENST00000462613 USP17L20D6RJB6 530 aa7.49□□□□□ -1.21
SF3B1-206ENST00000462613 SMIM22K7EJ46 135 aa7.49□□□□□ -1.21
SF3B1-206ENST00000462613 IFIT3O14879 490 aaKnown RBP7.49□□□□□ -1.21
SF3B1-206ENST00000462613 TRPA1O75762 1119 aa7.49□□□□□ -1.21
SF3B1-206ENST00000462613 TOP1P11387 765 aaKnown RBP7.49□□□□□ -1.21
SF3B1-206ENST00000462613 GUCY1A2P33402 732 aa7.49□□□□□ -1.21
SF3B1-206ENST00000462613 HSPA4P34932 840 aa7.49□□□□□ -1.21
SF3B1-206ENST00000462613 GCLCP48506 637 aaPredicted RBP7.49□□□□□ -1.21
SF3B1-206ENST00000462613 CTCFP49711 727 aaPredicted RBP7.49□□□□□ -1.21
SF3B1-206ENST00000462613 USP17L24Q0WX57 530 aa7.49□□□□□ -1.21
SF3B1-206ENST00000462613 IKQ13123 557 aaPredicted RBP7.49□□□□□ -1.21
SF3B1-206ENST00000462613 KIF22Q14807 665 aa7.49□□□□□ -1.21
SF3B1-206ENST00000462613 WTAPQ15007 396 aa7.49□□□□□ -1.21
SF3B1-206ENST00000462613 IFIT1BQ5T764 474 aaKnown RBP7.49□□□□□ -1.21
SF3B1-206ENST00000462613 SYNE3Q6ZMZ3 975 aa7.49□□□□□ -1.21
SF3B1-206ENST00000462613 CCAR1Q8IX12 1150 aaKnown RBP7.49□□□□□ -1.21
SF3B1-206ENST00000462613 TMTC2Q8N394 836 aa7.49□□□□□ -1.21
SF3B1-206ENST00000462613 BRI3BPQ8WY22 251 aa7.49□□□□□ -1.21
SF3B1-206ENST00000462613 TMEM87BQ96K49 555 aa7.49□□□□□ -1.21
SF3B1-206ENST00000462613 NEK1Q96PY6 1258 aa7.49□□□□□ -1.21
SF3B1-206ENST00000462613 ZSCAN10Q96SZ4 725 aaPredicted RBP7.49□□□□□ -1.21
SF3B1-206ENST00000462613 MTA3Q9BTC8 594 aa7.49□□□□□ -1.21
SF3B1-206ENST00000462613 WBP1LQ9NX94 342 aa7.49□□□□□ -1.21
SF3B1-206ENST00000462613 ZSWIM5Q9P217 1185 aa7.49□□□□□ -1.21
SF3B1-206ENST00000462613 TNKSO95271 1327 aa7.49□□□□□ -1.21
SF3B1-206ENST00000462613 ZNFX1Q9P2E3 1918 aaKnown RBP7.48□□□□□ -1.21
SF3B1-206ENST00000462613 IGKV6D-41A0A0C4DH26 115 aa7.48□□□□□ -1.21
SF3B1-206ENST00000462613 CCDC69A6NI79 296 aa7.48□□□□□ -1.21
SF3B1-206ENST00000462613 F5H6K3 240 aa7.48□□□□□ -1.21
SF3B1-206ENST00000462613 HSPA1AP0DMV8 641 aaKnown RBP7.48□□□□□ -1.21
SF3B1-206ENST00000462613 HSPA1BP0DMV9 641 aaKnown RBP7.48□□□□□ -1.21
SF3B1-206ENST00000462613 VCAM1P19320 739 aa7.48□□□□□ -1.21
SF3B1-206ENST00000462613 HOXA7P31268 230 aaPredicted RBP7.48□□□□□ -1.21
SF3B1-206ENST00000462613 SLC1A4P43007 532 aa7.48□□□□□ -1.21
SF3B1-206ENST00000462613 JAG1P78504 1218 aa7.48□□□□□ -1.21
SF3B1-206ENST00000462613 KLRC3Q07444 240 aa7.48□□□□□ -1.21
SF3B1-206ENST00000462613 CCDC96Q2M329 555 aa7.48□□□□□ -1.21
SF3B1-206ENST00000462613 SHROOM1Q2M3G4 852 aaPredicted RBP7.48□□□□□ -1.21
SF3B1-206ENST00000462613 TSGA10IPQ3SY00 556 aa7.48□□□□□ -1.21
SF3B1-206ENST00000462613 TMEM67Q5HYA8 995 aa7.48□□□□□ -1.21
SF3B1-206ENST00000462613 BLOC1S2Q6QNY1 142 aa7.48□□□□□ -1.21
SF3B1-206ENST00000462613 NFXL1Q6ZNB6 911 aa7.48□□□□□ -1.21
SF3B1-206ENST00000462613 CLEC10AQ8IUN9 316 aa7.48□□□□□ -1.21
SF3B1-206ENST00000462613 LRRC47Q8N1G4 583 aaKnown RBP7.48□□□□□ -1.21
SF3B1-206ENST00000462613 FAM43AQ8N2R8 423 aa7.48□□□□□ -1.21
SF3B1-206ENST00000462613 GMCL1P1Q8NEA9 526 aa7.48□□□□□ -1.21
SF3B1-206ENST00000462613 ACER1Q8TDN7 264 aa7.48□□□□□ -1.21
SF3B1-206ENST00000462613 CHURC1Q8WUH1 139 aa7.48□□□□□ -1.21
SF3B1-206ENST00000462613 MKL1Q969V6 931 aa7.48□□□□□ -1.21
SF3B1-206ENST00000462613 JAKMIP1Q96N16 626 aaKnown RBP7.48□□□□□ -1.21
SF3B1-206ENST00000462613 ZIC5Q96T25 663 aa7.48□□□□□ -1.21
SF3B1-206ENST00000462613 ZKSCAN3Q9BRR0 538 aa7.48□□□□□ -1.21
SF3B1-206ENST00000462613 USP26Q9BXU7 913 aa7.48□□□□□ -1.21
SF3B1-206ENST00000462613 NBPF3Q9H094 633 aa7.48□□□□□ -1.21
SF3B1-206ENST00000462613 RPAP3Q9H6T3 665 aaPredicted RBP7.48□□□□□ -1.21
SF3B1-206ENST00000462613 CWC22Q9HCG8 908 aaKnown RBP7.48□□□□□ -1.21
SF3B1-206ENST00000462613 INCENPQ9NQS7 918 aa7.48□□□□□ -1.21
SF3B1-206ENST00000462613 RNF186Q9NXI6 227 aa7.48□□□□□ -1.21
SF3B1-206ENST00000462613 HOXC10Q9NYD6 342 aa7.48□□□□□ -1.21
SF3B1-206ENST00000462613 MYPNQ86TC9 1320 aa7.48□□□□□ -1.21
SF3B1-206ENST00000462613 WDR19Q8NEZ3 1342 aa7.48□□□□□ -1.21
SF3B1-206ENST00000462613 A0A1W2PRG0 241 aa7.47□□□□□ -1.21
SF3B1-206ENST00000462613 IGF2BP3O00425 579 aaKnown RBP eCLIP7.47□□□□□ -1.21
SF3B1-206ENST00000462613 PRC1O43663 620 aa7.47□□□□□ -1.21
SF3B1-206ENST00000462613 NMT2O60551 498 aa7.47□□□□□ -1.21
SF3B1-206ENST00000462613 TLR2O60603 784 aa7.47□□□□□ -1.21
SF3B1-206ENST00000462613 FLOT1O75955 427 aa7.47□□□□□ -1.21
SF3B1-206ENST00000462613 CALM1P0DP23 149 aa7.47□□□□□ -1.21
SF3B1-206ENST00000462613 CALM2P0DP24 149 aa7.47□□□□□ -1.21
SF3B1-206ENST00000462613 CALM3P0DP25 149 aa7.47□□□□□ -1.21
SF3B1-206ENST00000462613 FDX1P10109 184 aa7.47□□□□□ -1.21
SF3B1-206ENST00000462613 BMP3P12645 472 aa7.47□□□□□ -1.21
SF3B1-206ENST00000462613 STAT2P52630 851 aa7.47□□□□□ -1.21
SF3B1-206ENST00000462613 ANAPC15P60006 121 aa7.47□□□□□ -1.21
SF3B1-206ENST00000462613 CCNA1P78396 465 aa7.47□□□□□ -1.21
SF3B1-206ENST00000462613 CRHR2Q13324 411 aa7.47□□□□□ -1.21
SF3B1-206ENST00000462613 COG2Q14746 738 aa7.47□□□□□ -1.21
SF3B1-206ENST00000462613 NOM1Q5C9Z4 860 aaKnown RBP7.47□□□□□ -1.21
SF3B1-206ENST00000462613 GPATCH4Q5T3I0 446 aaKnown RBP7.47□□□□□ -1.21
SF3B1-206ENST00000462613 SLFN13Q68D06 897 aa7.47□□□□□ -1.21
SF3B1-206ENST00000462613 RCSD1Q6JBY9 416 aa7.47□□□□□ -1.21
SF3B1-206ENST00000462613 SAMD1Q6SPF0 538 aaPredicted RBP7.47□□□□□ -1.21
SF3B1-206ENST00000462613 DHX32Q7L7V1 743 aaKnown RBP7.47□□□□□ -1.21
SF3B1-206ENST00000462613 CATIPQ7Z7H3 387 aa7.47□□□□□ -1.21
SF3B1-206ENST00000462613 FAM160B2Q86V87 743 aa7.47□□□□□ -1.21
SF3B1-206ENST00000462613 SPICE1Q8N0Z3 855 aa7.47□□□□□ -1.21
SF3B1-206ENST00000462613 PNMA1Q8ND90 353 aa7.47□□□□□ -1.21
SF3B1-206ENST00000462613 DCAF4Q8WV16 495 aa7.47□□□□□ -1.21
SF3B1-206ENST00000462613 TMEM47Q9BQJ4 181 aa7.47□□□□□ -1.21
SF3B1-206ENST00000462613 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.47□□□□□ -1.21
SF3B1-206ENST00000462613 CFHR5Q9BXR6 569 aa7.47□□□□□ -1.21
SF3B1-206ENST00000462613 ASCC2Q9H1I8 757 aaPredicted RBP7.47□□□□□ -1.21
SF3B1-206ENST00000462613 IL17RBQ9NRM6 502 aa7.47□□□□□ -1.21
SF3B1-206ENST00000462613 EMILIN3Q9NT22 766 aa7.47□□□□□ -1.21
SF3B1-206ENST00000462613 MTMR7Q9Y216 660 aa7.47□□□□□ -1.21
SF3B1-206ENST00000462613 CYP46A1Q9Y6A2 500 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms