RNA–Protein interactions for RNA: ENST00000457373.5

RFX3-210, Transcript of regulatory factor X3, humanhuman

TSL 5

Gene RFX3, Length 822 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-210ENST00000457373 USP17L2Q6R6M4 530 aa11.98□□□□□ -0.49
RFX3-210ENST00000457373 DDX27Q96GQ7 796 aaKnown RBP11.98□□□□□ -0.49
RFX3-210ENST00000457373 ZCCHC17Q9NP64 241 aaKnown RBP11.98□□□□□ -0.49
RFX3-210ENST00000457373 TOMM22Q9NS69 142 aa11.98□□□□□ -0.49
RFX3-210ENST00000457373 EMILIN3Q9NT22 766 aa11.98□□□□□ -0.49
RFX3-210ENST00000457373 CPA4Q9UI42 421 aa11.98□□□□□ -0.49
RFX3-210ENST00000457373 AGTPBP1Q9UPW5 1226 aa11.98□□□□□ -0.49
RFX3-210ENST00000457373 A0A1W2PRG0 241 aa11.97□□□□□ -0.49
RFX3-210ENST00000457373 TLR2O60603 784 aa11.97□□□□□ -0.49
RFX3-210ENST00000457373 OSBPP22059 807 aa11.97□□□□□ -0.49
RFX3-210ENST00000457373 USP14P54578 494 aa11.97□□□□□ -0.49
RFX3-210ENST00000457373 ICA1Q05084 483 aa11.97□□□□□ -0.49
RFX3-210ENST00000457373 PABPC4Q13310 644 aaKnown RBP eCLIP11.97□□□□□ -0.49
RFX3-210ENST00000457373 FAM47AQ5JRC9 791 aa11.97□□□□□ -0.49
RFX3-210ENST00000457373 RRP12Q5JTH9 1297 aaKnown RBP11.97□□□□□ -0.49
RFX3-210ENST00000457373 ARHGEF10LQ9HCE6 1279 aa11.97□□□□□ -0.49
RFX3-210ENST00000457373 TACC3Q9Y6A5 838 aa11.97□□□□□ -0.49
RFX3-210ENST00000457373 RAD50Q92878 1312 aa11.96□□□□□ -0.49
RFX3-210ENST00000457373 ZNF213O14771 459 aa11.96□□□□□ -0.49
RFX3-210ENST00000457373 TSPY3P0CV98 308 aa11.96□□□□□ -0.49
RFX3-210ENST00000457373 TSPY8P0CW00 308 aa11.96□□□□□ -0.49
RFX3-210ENST00000457373 EEF2P13639 858 aaKnown RBP11.96□□□□□ -0.49
RFX3-210ENST00000457373 TFAP4Q01664 338 aa11.96□□□□□ -0.49
RFX3-210ENST00000457373 SP3Q02447 781 aa11.96□□□□□ -0.49
RFX3-210ENST00000457373 BMP2KLQ5H9B9 411 aa11.96□□□□□ -0.49
RFX3-210ENST00000457373 SIAH1Q8IUQ4 282 aa11.96□□□□□ -0.49
RFX3-210ENST00000457373 PARK7Q99497 189 aaKnown RBP11.96□□□□□ -0.49
RFX3-210ENST00000457373 DSCC1Q9BVC3 393 aa11.96□□□□□ -0.49
RFX3-210ENST00000457373 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.96□□□□□ -0.49
RFX3-210ENST00000457373 KIAA1683Q9H0B3 1180 aa11.96□□□□□ -0.49
RFX3-210ENST00000457373 KANSL2Q9H9L4 492 aa11.96□□□□□ -0.49
RFX3-210ENST00000457373 DAXXQ9UER7 740 aaPredicted RBP11.96□□□□□ -0.49
RFX3-210ENST00000457373 ANAPC4Q9UJX5 808 aa11.96□□□□□ -0.49
RFX3-210ENST00000457373 PNMA3Q9UL41 463 aa11.96□□□□□ -0.49
RFX3-210ENST00000457373 SLC45A1Q9Y2W3 748 aa11.96□□□□□ -0.49
RFX3-210ENST00000457373 GREB1LQ9C091 1923 aaPredicted RBP11.96□□□□□ -0.5
RFX3-210ENST00000457373 MYH4Q9Y623 1939 aa11.96□□□□□ -0.5
RFX3-210ENST00000457373 ZMYM6O95789 1325 aa11.95□□□□□ -0.5
RFX3-210ENST00000457373 TSPY2A6NKD2 308 aa11.95□□□□□ -0.5
RFX3-210ENST00000457373 SGSM2O43147 1006 aa11.95□□□□□ -0.5
RFX3-210ENST00000457373 RAD21O60216 631 aa11.95□□□□□ -0.5
RFX3-210ENST00000457373 RANBP6O60518 1105 aaKnown RBP11.95□□□□□ -0.5
RFX3-210ENST00000457373 IRX3P78415 501 aaPredicted RBP11.95□□□□□ -0.5
RFX3-210ENST00000457373 PTH1RQ03431 593 aa11.95□□□□□ -0.5
RFX3-210ENST00000457373 NOM1Q5C9Z4 860 aaKnown RBP11.95□□□□□ -0.5
RFX3-210ENST00000457373 C17orf99Q6UX52 265 aa11.95□□□□□ -0.5
RFX3-210ENST00000457373 NEDD1Q8NHV4 660 aa11.95□□□□□ -0.5
RFX3-210ENST00000457373 CD99L2Q8TCZ2 262 aa11.95□□□□□ -0.5
RFX3-210ENST00000457373 SMCR8Q8TEV9 937 aaPredicted RBP11.95□□□□□ -0.5
RFX3-210ENST00000457373 CLIP2Q9UDT6 1046 aa11.95□□□□□ -0.5
RFX3-210ENST00000457373 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.95□□□□□ -0.5
RFX3-210ENST00000457373 TMX2Q9Y320 296 aa11.95□□□□□ -0.5
RFX3-210ENST00000457373 IMMTQ16891 758 aaKnown RBP11.94□□□□□ -0.5
RFX3-210ENST00000457373 AKNAD1Q5T1N1 836 aa11.94□□□□□ -0.5
RFX3-210ENST00000457373 MFSD6Q6ZSS7 791 aa11.94□□□□□ -0.5
RFX3-210ENST00000457373 TNS4Q8IZW8 715 aa11.94□□□□□ -0.5
RFX3-210ENST00000457373 ERO1AQ96HE7 468 aa11.94□□□□□ -0.5
RFX3-210ENST00000457373 C12orf42Q96LP6 360 aa11.94□□□□□ -0.5
RFX3-210ENST00000457373 P2RX7Q99572 595 aaKnown RBP11.94□□□□□ -0.5
RFX3-210ENST00000457373 ASCC2Q9H1I8 757 aaPredicted RBP11.94□□□□□ -0.5
RFX3-210ENST00000457373 SH2D4AQ9H788 454 aa11.94□□□□□ -0.5
RFX3-210ENST00000457373 CTNNA3Q9UI47 895 aa11.94□□□□□ -0.5
RFX3-210ENST00000457373 LAMA4Q16363 1823 aa11.93□□□□□ -0.5
RFX3-210ENST00000457373 ADGRA2Q96PE1 1338 aa11.93□□□□□ -0.5
RFX3-210ENST00000457373 IGKV6D-41A0A0C4DH26 115 aa11.93□□□□□ -0.5
RFX3-210ENST00000457373 USP17L15C9J2P7 530 aa11.93□□□□□ -0.5
RFX3-210ENST00000457373 USP17L13C9JLJ4 530 aa11.93□□□□□ -0.5
RFX3-210ENST00000457373 USP17L11C9JVI0 530 aa11.93□□□□□ -0.5
RFX3-210ENST00000457373 USP17L18D6R9N7 530 aa11.93□□□□□ -0.5
RFX3-210ENST00000457373 USP17L22D6RA61 530 aa11.93□□□□□ -0.5
RFX3-210ENST00000457373 USP17L17D6RBQ6 530 aa11.93□□□□□ -0.5
RFX3-210ENST00000457373 USP17L19D6RCP7 530 aa11.93□□□□□ -0.5
RFX3-210ENST00000457373 USP17L20D6RJB6 530 aa11.93□□□□□ -0.5
RFX3-210ENST00000457373 ORC4O43929 436 aa11.93□□□□□ -0.5
RFX3-210ENST00000457373 VCAM1P19320 739 aa11.93□□□□□ -0.5
RFX3-210ENST00000457373 HOXA7P31268 230 aaPredicted RBP11.93□□□□□ -0.5
RFX3-210ENST00000457373 USP17L24Q0WX57 530 aa11.93□□□□□ -0.5
RFX3-210ENST00000457373 KIAA1755Q5JYT7 1200 aa11.93□□□□□ -0.5
RFX3-210ENST00000457373 CATSPERGQ6ZRH7 1159 aa11.93□□□□□ -0.5
RFX3-210ENST00000457373 KIAA1211Q6ZU35 1233 aa11.93□□□□□ -0.5
RFX3-210ENST00000457373 TBC1D10CQ8IV04 446 aa11.93□□□□□ -0.5
RFX3-210ENST00000457373 SPICE1Q8N0Z3 855 aa11.93□□□□□ -0.5
RFX3-210ENST00000457373 ANKRD13CQ8N6S4 541 aa11.93□□□□□ -0.5
RFX3-210ENST00000457373 CEP95Q96GE4 821 aa11.93□□□□□ -0.5
RFX3-210ENST00000457373 ESYT1Q9BSJ8 1104 aa11.93□□□□□ -0.5
RFX3-210ENST00000457373 NBPF3Q9H094 633 aa11.93□□□□□ -0.5
RFX3-210ENST00000457373 RNF41Q9H4P4 317 aaPredicted RBP11.93□□□□□ -0.5
RFX3-210ENST00000457373 RPAP3Q9H6T3 665 aaPredicted RBP11.93□□□□□ -0.5
RFX3-210ENST00000457373 VCPKMTQ9H867 229 aa11.93□□□□□ -0.5
RFX3-210ENST00000457373 NYAP2Q9P242 653 aa11.93□□□□□ -0.5
RFX3-210ENST00000457373 TRIM17Q9Y577 477 aa11.93□□□□□ -0.5
RFX3-210ENST00000457373 ZSWIM8A7E2V4 1837 aa11.93□□□□□ -0.5
RFX3-210ENST00000457373 CDC45O75419 566 aa11.92□□□□□ -0.5
RFX3-210ENST00000457373 FGRP09769 529 aa11.92□□□□□ -0.5
RFX3-210ENST00000457373 BCRP11274 1271 aa11.92□□□□□ -0.5
RFX3-210ENST00000457373 KIF22Q14807 665 aa11.92□□□□□ -0.5
RFX3-210ENST00000457373 CASC1Q6TDU7 716 aa11.92□□□□□ -0.5
RFX3-210ENST00000457373 CTU1Q7Z7A3 348 aaKnown RBP11.92□□□□□ -0.5
RFX3-210ENST00000457373 STAG1Q8WVM7 1258 aa11.92□□□□□ -0.5
RFX3-210ENST00000457373 CHMP4CQ96CF2 233 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms