RNA–Protein interactions for RNA: ENST00000414419.6

RFFL-204, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 559 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-204ENST00000414419 TMX2Q9Y320 296 aa13.35□□□□□ -0.27
RFFL-204ENST00000414419 RABGAP1Q9Y3P9 1069 aa13.35□□□□□ -0.27
RFFL-204ENST00000414419 HTTP42858 3142 aa13.35□□□□□ -0.27
RFFL-204ENST00000414419 CENPFP49454 3210 aa13.35□□□□□ -0.27
RFFL-204ENST00000414419 RBBP6Q7Z6E9 1792 aaKnown RBP13.35□□□□□ -0.27
RFFL-204ENST00000414419 ROBO3Q96MS0 1386 aa13.34□□□□□ -0.27
RFFL-204ENST00000414419 ADCY3O60266 1144 aa13.34□□□□□ -0.27
RFFL-204ENST00000414419 RASA1P20936 1047 aa13.34□□□□□ -0.27
RFFL-204ENST00000414419 MAPK4P31152 587 aa13.34□□□□□ -0.27
RFFL-204ENST00000414419 MFAP1P55081 439 aaKnown RBP13.34□□□□□ -0.27
RFFL-204ENST00000414419 PPARAQ07869 468 aa13.34□□□□□ -0.27
RFFL-204ENST00000414419 COG2Q14746 738 aa13.34□□□□□ -0.27
RFFL-204ENST00000414419 VCPKMTQ9H867 229 aa13.34□□□□□ -0.27
RFFL-204ENST00000414419 TXNRD2Q9NNW7 524 aa13.34□□□□□ -0.27
RFFL-204ENST00000414419 HIP1O00291 1037 aa13.33□□□□□ -0.28
RFFL-204ENST00000414419 PRDM1O75626 825 aa13.33□□□□□ -0.28
RFFL-204ENST00000414419 TSPY3P0CV98 308 aa13.33□□□□□ -0.28
RFFL-204ENST00000414419 TSPY8P0CW00 308 aa13.33□□□□□ -0.28
RFFL-204ENST00000414419 SDSP20132 328 aa13.33□□□□□ -0.28
RFFL-204ENST00000414419 NMIQ13287 307 aaPredicted RBP13.33□□□□□ -0.28
RFFL-204ENST00000414419 IRF5Q13568 498 aa13.33□□□□□ -0.28
RFFL-204ENST00000414419 Q3C1V9 767 aa13.33□□□□□ -0.28
RFFL-204ENST00000414419 SIAH1Q8IUQ4 282 aa13.33□□□□□ -0.28
RFFL-204ENST00000414419 SPICE1Q8N0Z3 855 aa13.33□□□□□ -0.28
RFFL-204ENST00000414419 PXYLP1Q8TE99 480 aa13.33□□□□□ -0.28
RFFL-204ENST00000414419 FAM227BQ96M60 508 aa13.33□□□□□ -0.28
RFFL-204ENST00000414419 DIAPH3Q9NSV4 1193 aa13.33□□□□□ -0.28
RFFL-204ENST00000414419 GREB1LQ9C091 1923 aaPredicted RBP13.33□□□□□ -0.28
RFFL-204ENST00000414419 A0A0D9SFI3 127 aa13.32□□□□□ -0.28
RFFL-204ENST00000414419 POTEFA5A3E0 1075 aa13.32□□□□□ -0.28
RFFL-204ENST00000414419 SPDYE16A6NNV3 312 aaPredicted RBP13.32□□□□□ -0.28
RFFL-204ENST00000414419 WDR46O15213 610 aaKnown RBP13.32□□□□□ -0.28
RFFL-204ENST00000414419 PEX10O60683 326 aa13.32□□□□□ -0.28
RFFL-204ENST00000414419 FLOT1O75955 427 aa13.32□□□□□ -0.28
RFFL-204ENST00000414419 WDR78Q5VTH9 848 aa13.32□□□□□ -0.28
RFFL-204ENST00000414419 SAMD1Q6SPF0 538 aaPredicted RBP13.32□□□□□ -0.28
RFFL-204ENST00000414419 LBX2Q6XYB7 198 aa13.32□□□□□ -0.28
RFFL-204ENST00000414419 NUDT12Q9BQG2 462 aa13.32□□□□□ -0.28
RFFL-204ENST00000414419 PDE4DIPQ5VU43 2346 aa13.31□□□□□ -0.28
RFFL-204ENST00000414419 ELNP15502 786 aa13.31□□□□□ -0.28
RFFL-204ENST00000414419 CTDSPL2Q05D32 466 aa13.31□□□□□ -0.28
RFFL-204ENST00000414419 VPS53Q5VIR6 699 aa13.31□□□□□ -0.28
RFFL-204ENST00000414419 CWC27Q6UX04 472 aaKnown RBP13.31□□□□□ -0.28
RFFL-204ENST00000414419 PLEKHH3Q7Z736 793 aa13.31□□□□□ -0.28
RFFL-204ENST00000414419 SOCS4Q8WXH5 440 aa13.31□□□□□ -0.28
RFFL-204ENST00000414419 RNF208Q9H0X6 261 aa13.31□□□□□ -0.28
RFFL-204ENST00000414419 NYAP2Q9P242 653 aa13.31□□□□□ -0.28
RFFL-204ENST00000414419 CLIP2Q9UDT6 1046 aa13.31□□□□□ -0.28
RFFL-204ENST00000414419 IVNS1ABPQ9Y6Y0 642 aa13.31□□□□□ -0.28
RFFL-204ENST00000414419 CCDC171Q6TFL3 1326 aa13.31□□□□□ -0.28
RFFL-204ENST00000414419 PARP14Q460N5 1801 aa13.3□□□□□ -0.28
RFFL-204ENST00000414419 TSPY2A6NKD2 308 aa13.3□□□□□ -0.28
RFFL-204ENST00000414419 TTLL1O95922 423 aa13.3□□□□□ -0.28
RFFL-204ENST00000414419 HSPD1P10809 573 aaKnown RBP13.3□□□□□ -0.28
RFFL-204ENST00000414419 CCL5P13501 91 aa13.3□□□□□ -0.28
RFFL-204ENST00000414419 EN2P19622 333 aaPredicted RBP13.3□□□□□ -0.28
RFFL-204ENST00000414419 CYP2B6P20813 491 aa13.3□□□□□ -0.28
RFFL-204ENST00000414419 DSG3P32926 999 aa13.3□□□□□ -0.28
RFFL-204ENST00000414419 TFAP4Q01664 338 aa13.3□□□□□ -0.28
RFFL-204ENST00000414419 PLS1Q14651 629 aa13.3□□□□□ -0.28
RFFL-204ENST00000414419 MTFR1Q15390 333 aa13.3□□□□□ -0.28
RFFL-204ENST00000414419 ALX1Q15699 326 aa13.3□□□□□ -0.28
RFFL-204ENST00000414419 FAM47AQ5JRC9 791 aa13.3□□□□□ -0.28
RFFL-204ENST00000414419 KIAA1755Q5JYT7 1200 aa13.3□□□□□ -0.28
RFFL-204ENST00000414419 PPP4R3BQ5MIZ7 849 aa13.3□□□□□ -0.28
RFFL-204ENST00000414419 GPR142Q7Z601 462 aa13.3□□□□□ -0.28
RFFL-204ENST00000414419 MB21D1Q8N884 522 aa13.3□□□□□ -0.28
RFFL-204ENST00000414419 NEDD1Q8NHV4 660 aa13.3□□□□□ -0.28
RFFL-204ENST00000414419 NKX2-3Q8TAU0 364 aa13.3□□□□□ -0.28
RFFL-204ENST00000414419 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.3□□□□□ -0.28
RFFL-204ENST00000414419 PORCNQ9H237 461 aa13.3□□□□□ -0.28
RFFL-204ENST00000414419 TOMM22Q9NS69 142 aa13.3□□□□□ -0.28
RFFL-204ENST00000414419 BTBD7Q9P203 1132 aa13.3□□□□□ -0.28
RFFL-204ENST00000414419 GJD2Q9UKL4 321 aa13.3□□□□□ -0.28
RFFL-204ENST00000414419 RLFQ13129 1914 aa13.3□□□□□ -0.28
RFFL-204ENST00000414419 PLXNB2O15031 1838 aa13.29□□□□□ -0.28
RFFL-204ENST00000414419 COL11A1P12107 1806 aaPredicted RBP13.29□□□□□ -0.28
RFFL-204ENST00000414419 F5H6K3 240 aa13.29□□□□□ -0.28
RFFL-204ENST00000414419 RANBP6O60518 1105 aaKnown RBP13.29□□□□□ -0.28
RFFL-204ENST00000414419 CNMDO75829 334 aa13.29□□□□□ -0.28
RFFL-204ENST00000414419 FGAP02671 866 aa13.29□□□□□ -0.28
RFFL-204ENST00000414419 INHAP05111 366 aa13.29□□□□□ -0.28
RFFL-204ENST00000414419 RGS2P41220 211 aa13.29□□□□□ -0.28
RFFL-204ENST00000414419 KLRC3Q07444 240 aa13.29□□□□□ -0.28
RFFL-204ENST00000414419 FAM83BQ5T0W9 1011 aa13.29□□□□□ -0.28
RFFL-204ENST00000414419 ZNF589Q86UQ0 364 aaPredicted RBP13.29□□□□□ -0.28
RFFL-204ENST00000414419 TRMT44Q8IYL2 757 aaKnown RBP13.29□□□□□ -0.28
RFFL-204ENST00000414419 CEP95Q96GE4 821 aa13.29□□□□□ -0.28
RFFL-204ENST00000414419 MTMR4Q9NYA4 1195 aa13.29□□□□□ -0.28
RFFL-204ENST00000414419 ANAPC4Q9UJX5 808 aa13.29□□□□□ -0.28
RFFL-204ENST00000414419 ZNFX1Q9P2E3 1918 aaKnown RBP13.29□□□□□ -0.28
RFFL-204ENST00000414419 FOXP2O15409 715 aa13.28□□□□□ -0.28
RFFL-204ENST00000414419 HMGCRP04035 888 aa13.28□□□□□ -0.28
RFFL-204ENST00000414419 PDE4AP27815 886 aa13.28□□□□□ -0.28
RFFL-204ENST00000414419 TTC22Q5TAA0 569 aa13.28□□□□□ -0.28
RFFL-204ENST00000414419 POTEEQ6S8J3 1075 aa13.28□□□□□ -0.28
RFFL-204ENST00000414419 ATG4CQ96DT6 458 aa13.28□□□□□ -0.28
RFFL-204ENST00000414419 SPATC1LQ9H0A9 340 aa13.28□□□□□ -0.28
RFFL-204ENST00000414419 SYNPO2Q9UMS6 1093 aa13.28□□□□□ -0.28
RFFL-204ENST00000414419 IGKV6D-41A0A0C4DH26 115 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms