RNA–Protein interactions for RNA: ENST00000409225.2

CHMP3-203, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,099 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-203ENST00000409225 FAM47AQ5JRC9 791 aa20.36■□□□□ 0.85
CHMP3-203ENST00000409225 SPATC1LQ9H0A9 340 aa20.36■□□□□ 0.85
CHMP3-203ENST00000409225 GPR108Q9NPR9 543 aa20.36■□□□□ 0.85
CHMP3-203ENST00000409225 ZNF236Q9UL36 1845 aa20.36■□□□□ 0.85
CHMP3-203ENST00000409225 TMEM265A0A087WTH1 108 aa20.35■□□□□ 0.85
CHMP3-203ENST00000409225 SHMT1P34896 483 aa20.35■□□□□ 0.85
CHMP3-203ENST00000409225 RARSP54136 660 aaKnown RBP20.35■□□□□ 0.85
CHMP3-203ENST00000409225 EPHB4P54760 987 aa20.35■□□□□ 0.85
CHMP3-203ENST00000409225 COG2Q14746 738 aa20.35■□□□□ 0.85
CHMP3-203ENST00000409225 SEPT2Q15019 361 aa20.35■□□□□ 0.85
CHMP3-203ENST00000409225 C1orf53Q5VUE5 145 aa20.35■□□□□ 0.85
CHMP3-203ENST00000409225 TTC6Q86TZ1 520 aa20.35■□□□□ 0.85
CHMP3-203ENST00000409225 ARHGAP45Q92619 1136 aa20.35■□□□□ 0.85
CHMP3-203ENST00000409225 TANGO6Q9C0B7 1094 aa20.35■□□□□ 0.85
CHMP3-203ENST00000409225 GUCY1A2P33402 732 aa20.34■□□□□ 0.85
CHMP3-203ENST00000409225 PLS1Q14651 629 aa20.34■□□□□ 0.85
CHMP3-203ENST00000409225 GRIN2CQ14957 1233 aa20.34■□□□□ 0.85
CHMP3-203ENST00000409225 TJAP1Q5JTD0 557 aa20.34■□□□□ 0.85
CHMP3-203ENST00000409225 MAGEB6Q8N7X4 407 aa20.34■□□□□ 0.85
CHMP3-203ENST00000409225 USP38Q8NB14 1042 aa20.34■□□□□ 0.85
CHMP3-203ENST00000409225 SHCBP1Q8NEM2 672 aa20.34■□□□□ 0.85
CHMP3-203ENST00000409225 SLC5A4Q9NY91 659 aa20.34■□□□□ 0.85
CHMP3-203ENST00000409225 HOXC10Q9NYD6 342 aa20.34■□□□□ 0.85
CHMP3-203ENST00000409225 IGSF3O75054 1194 aa20.33■□□□□ 0.85
CHMP3-203ENST00000409225 CLTBP09497 229 aa20.33■□□□□ 0.85
CHMP3-203ENST00000409225 COL9A1P20849 921 aa20.33■□□□□ 0.85
CHMP3-203ENST00000409225 PLCD1P51178 756 aa20.33■□□□□ 0.85
CHMP3-203ENST00000409225 NCAPG2Q86XI2 1143 aa20.33■□□□□ 0.85
CHMP3-203ENST00000409225 ZNF512BQ96KM6 892 aaPredicted RBP20.33■□□□□ 0.85
CHMP3-203ENST00000409225 TNNQ9UQP3 1299 aa20.33■□□□□ 0.85
CHMP3-203ENST00000409225 TACC3Q9Y6A5 838 aa20.33■□□□□ 0.85
CHMP3-203ENST00000409225 TNFRSF10AO00220 468 aa20.32■□□□□ 0.84
CHMP3-203ENST00000409225 MPHOSPH10O00566 681 aaKnown RBP20.32■□□□□ 0.84
CHMP3-203ENST00000409225 RAG1P15918 1043 aa20.32■□□□□ 0.84
CHMP3-203ENST00000409225 CERS3Q8IU89 383 aa20.32■□□□□ 0.84
CHMP3-203ENST00000409225 MAML3Q96JK9 1138 aa20.32■□□□□ 0.84
CHMP3-203ENST00000409225 XPNPEP3Q9NQH7 507 aa20.32■□□□□ 0.84
CHMP3-203ENST00000409225 TLR7Q9NYK1 1049 aaKnown RBP20.32■□□□□ 0.84
CHMP3-203ENST00000409225 PHF24Q9UPV7 400 aa20.32■□□□□ 0.84
CHMP3-203ENST00000409225 A0A1W2PRG0 241 aa20.31■□□□□ 0.84
CHMP3-203ENST00000409225 PQBP1O60828 265 aaKnown RBP20.31■□□□□ 0.84
CHMP3-203ENST00000409225 POLR3DP05423 398 aaPredicted RBP20.31■□□□□ 0.84
CHMP3-203ENST00000409225 FPGSQ05932 587 aa20.31■□□□□ 0.84
CHMP3-203ENST00000409225 KIAA0355O15063 1070 aa20.3■□□□□ 0.84
CHMP3-203ENST00000409225 RARBP10826 455 aa20.3■□□□□ 0.84
CHMP3-203ENST00000409225 TRIM27P14373 513 aa20.3■□□□□ 0.84
CHMP3-203ENST00000409225 DNAJB2P25686 324 aa20.3■□□□□ 0.84
CHMP3-203ENST00000409225 SAMD1Q6SPF0 538 aaPredicted RBP20.3■□□□□ 0.84
CHMP3-203ENST00000409225 MB21D1Q8N884 522 aa20.3■□□□□ 0.84
CHMP3-203ENST00000409225 CCDC8Q9H0W5 538 aaPredicted RBP20.3■□□□□ 0.84
CHMP3-203ENST00000409225 MROH8Q9H579 483 aa20.3■□□□□ 0.84
CHMP3-203ENST00000409225 DBNLQ9UJU6 430 aaKnown RBP20.3■□□□□ 0.84
CHMP3-203ENST00000409225 A0A0G2JMZ2 1700 aa20.3■□□□□ 0.84
CHMP3-203ENST00000409225 SURF6O75683 361 aaKnown RBP20.29■□□□□ 0.84
CHMP3-203ENST00000409225 PGK1P00558 417 aa20.29■□□□□ 0.84
CHMP3-203ENST00000409225 DSG3P32926 999 aa20.29■□□□□ 0.84
CHMP3-203ENST00000409225 POLA2Q14181 598 aa20.29■□□□□ 0.84
CHMP3-203ENST00000409225 KIAA1755Q5JYT7 1200 aa20.29■□□□□ 0.84
CHMP3-203ENST00000409225 RNF180Q86T96 592 aa20.29■□□□□ 0.84
CHMP3-203ENST00000409225 ABRAQ8N0Z2 381 aa20.29■□□□□ 0.84
CHMP3-203ENST00000409225 ATG4CQ96DT6 458 aa20.29■□□□□ 0.84
CHMP3-203ENST00000409225 TMEM39AQ9NV64 488 aa20.29■□□□□ 0.84
CHMP3-203ENST00000409225 RAPGEFL1Q9UHV5 662 aa20.29■□□□□ 0.84
CHMP3-203ENST00000409225 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.28■□□□□ 0.84
CHMP3-203ENST00000409225 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.28■□□□□ 0.84
CHMP3-203ENST00000409225 A0A1W2PQ45 241 aaPredicted RBP20.28■□□□□ 0.84
CHMP3-203ENST00000409225 A0A1W2PQY0 241 aa20.28■□□□□ 0.84
CHMP3-203ENST00000409225 FLOT1O75955 427 aa20.28■□□□□ 0.84
CHMP3-203ENST00000409225 FCER1AP12319 257 aa20.28■□□□□ 0.84
CHMP3-203ENST00000409225 EVX2Q03828 476 aa20.28■□□□□ 0.84
CHMP3-203ENST00000409225 PPM1EQ8WY54 764 aa20.28■□□□□ 0.84
CHMP3-203ENST00000409225 CLUAP1Q96AJ1 413 aa20.28■□□□□ 0.84
CHMP3-203ENST00000409225 ZNF576Q9H609 170 aa20.28■□□□□ 0.84
CHMP3-203ENST00000409225 ANTXR1Q9H6X2 564 aa20.28■□□□□ 0.84
CHMP3-203ENST00000409225 ZNF316A6NFI3 1004 aaPredicted RBP20.27■□□□□ 0.84
CHMP3-203ENST00000409225 IPO8O15397 1037 aaKnown RBP20.27■□□□□ 0.84
CHMP3-203ENST00000409225 BCAR3O75815 825 aa20.27■□□□□ 0.84
CHMP3-203ENST00000409225 GABPAQ06546 454 aa20.27■□□□□ 0.84
CHMP3-203ENST00000409225 MAP3K12Q12852 859 aa20.27■□□□□ 0.84
CHMP3-203ENST00000409225 FRAT1Q92837 279 aaPredicted RBP20.27■□□□□ 0.84
CHMP3-203ENST00000409225 TIFAQ96CG3 184 aa20.27■□□□□ 0.84
CHMP3-203ENST00000409225 SMCHD1A6NHR9 2005 aa20.26■□□□□ 0.83
CHMP3-203ENST00000409225 PGK2P07205 417 aa20.26■□□□□ 0.83
CHMP3-203ENST00000409225 TAL1P17542 331 aaPredicted RBP20.26■□□□□ 0.83
CHMP3-203ENST00000409225 SPICE1Q8N0Z3 855 aa20.26■□□□□ 0.83
CHMP3-203ENST00000409225 SSH3Q8TE77 659 aa20.26■□□□□ 0.83
CHMP3-203ENST00000409225 LENG1Q96BZ8 264 aaPredicted RBP20.26■□□□□ 0.83
CHMP3-203ENST00000409225 RIOK1Q9BRS2 568 aaKnown RBP20.26■□□□□ 0.83
CHMP3-203ENST00000409225 NRBP1Q9UHY1 535 aa20.26■□□□□ 0.83
CHMP3-203ENST00000409225 NAV1Q8NEY1 1877 aa20.26■□□□□ 0.83
CHMP3-203ENST00000409225 ATP8B2P98198 1209 aa20.25■□□□□ 0.83
CHMP3-203ENST00000409225 FAAP100Q0VG06 881 aa20.25■□□□□ 0.83
CHMP3-203ENST00000409225 CLEC10AQ8IUN9 316 aa20.25■□□□□ 0.83
CHMP3-203ENST00000409225 EAF2Q96CJ1 260 aaPredicted RBP20.25■□□□□ 0.83
CHMP3-203ENST00000409225 MMP19Q99542 508 aa20.25■□□□□ 0.83
CHMP3-203ENST00000409225 MCM9Q9NXL9 1143 aa20.25■□□□□ 0.83
CHMP3-203ENST00000409225 MUC3AQ02505 3323 aa20.25■□□□□ 0.83
CHMP3-203ENST00000409225 MAGEB6P1A0A0J9YX57 407 aa20.24■□□□□ 0.83
CHMP3-203ENST00000409225 DCDC2CA8MYV0 355 aa20.24■□□□□ 0.83
CHMP3-203ENST00000409225 TMEM132BQ14DG7 1078 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms