RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 GADD45BO75293 160 aaPredicted RBP21.02■□□□□ 0.96
CCDC88C-203ENST00000389856 AKR1B1P15121 316 aa21.02■□□□□ 0.96
CCDC88C-203ENST00000389856 CERKLQ49MI3 558 aaPredicted RBP21.02■□□□□ 0.96
CCDC88C-203ENST00000389856 KRT40Q6A162 431 aa21.02■□□□□ 0.96
CCDC88C-203ENST00000389856 ZFPM1Q8IX07 1006 aa21.02■□□□□ 0.96
CCDC88C-203ENST00000389856 ZBED3Q96IU2 234 aaPredicted RBP21.02■□□□□ 0.96
CCDC88C-203ENST00000389856 CSRNP1Q96S65 589 aa21.02■□□□□ 0.96
CCDC88C-203ENST00000389856 IGKV6D-41A0A0C4DH26 115 aa21.01■□□□□ 0.95
CCDC88C-203ENST00000389856 GUCY1B3Q02153 619 aa21.01■□□□□ 0.95
CCDC88C-203ENST00000389856 TATDN1Q6P1N9 297 aa21.01■□□□□ 0.95
CCDC88C-203ENST00000389856 VEZTQ9HBM0 779 aa21.01■□□□□ 0.95
CCDC88C-203ENST00000389856 SIPA1L1O43166 1804 aa21.01■□□□□ 0.95
CCDC88C-203ENST00000389856 GREB1LQ9C091 1923 aaPredicted RBP21.01■□□□□ 0.95
CCDC88C-203ENST00000389856 CLRN2A0PK11 232 aa21■□□□□ 0.95
CCDC88C-203ENST00000389856 TCP10L2B9ZVM9 353 aa21■□□□□ 0.95
CCDC88C-203ENST00000389856 PARP1P09874 1014 aaKnown RBP21■□□□□ 0.95
CCDC88C-203ENST00000389856 SMARCA1P28370 1054 aa21■□□□□ 0.95
CCDC88C-203ENST00000389856 FAM177A1Q8N128 213 aaPredicted RBP21■□□□□ 0.95
CCDC88C-203ENST00000389856 KANSL2Q9H9L4 492 aa21■□□□□ 0.95
CCDC88C-203ENST00000389856 BRMS1Q9HCU9 246 aa21■□□□□ 0.95
CCDC88C-203ENST00000389856 CABP5Q9NP86 173 aa21■□□□□ 0.95
CCDC88C-203ENST00000389856 RRAGDQ9NQL2 400 aaPredicted RBP21■□□□□ 0.95
CCDC88C-203ENST00000389856 GJA3Q9Y6H8 435 aa21■□□□□ 0.95
CCDC88C-203ENST00000389856 CNTNAP5Q8WYK1 1306 aa21■□□□□ 0.95
CCDC88C-203ENST00000389856 GMPSP49915 693 aaPredicted RBP21■□□□□ 0.95
CCDC88C-203ENST00000389856 TMEM179Q6ZVK1 233 aa21■□□□□ 0.95
CCDC88C-203ENST00000389856 SH3BP5LQ7L8J4 393 aa21■□□□□ 0.95
CCDC88C-203ENST00000389856 CCDC82Q8N4S0 544 aa21■□□□□ 0.95
CCDC88C-203ENST00000389856 SPATA32Q96LK8 384 aa21■□□□□ 0.95
CCDC88C-203ENST00000389856 GDPD2Q9HCC8 539 aa21■□□□□ 0.95
CCDC88C-203ENST00000389856 GOLGA6L4A6NEF3 574 aa20.99■□□□□ 0.95
CCDC88C-203ENST00000389856 H7C1D1 291 aa20.99■□□□□ 0.95
CCDC88C-203ENST00000389856 PLEKHA8P1O95397 391 aa20.99■□□□□ 0.95
CCDC88C-203ENST00000389856 KIF23Q02241 960 aaPredicted RBP20.99■□□□□ 0.95
CCDC88C-203ENST00000389856 FUT2Q10981 343 aa20.99■□□□□ 0.95
CCDC88C-203ENST00000389856 WNT10BO00744 389 aa20.98■□□□□ 0.95
CCDC88C-203ENST00000389856 ABCB5Q2M3G0 1257 aa20.98■□□□□ 0.95
CCDC88C-203ENST00000389856 ASPRV1Q53RT3 343 aa20.98■□□□□ 0.95
CCDC88C-203ENST00000389856 RBM26Q5T8P6 1007 aaKnown RBP20.98■□□□□ 0.95
CCDC88C-203ENST00000389856 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.98■□□□□ 0.95
CCDC88C-203ENST00000389856 V9GY48 417 aaPredicted RBP20.98■□□□□ 0.95
CCDC88C-203ENST00000389856 PALM3A6NDB9 673 aaPredicted RBP20.97■□□□□ 0.95
CCDC88C-203ENST00000389856 TBC1D12O60347 775 aa20.97■□□□□ 0.95
CCDC88C-203ENST00000389856 MMP1P03956 469 aa20.97■□□□□ 0.95
CCDC88C-203ENST00000389856 MICALL2Q8IY33 904 aa20.97■□□□□ 0.95
CCDC88C-203ENST00000389856 SRBD1Q8N5C6 995 aaKnown RBP20.97■□□□□ 0.95
CCDC88C-203ENST00000389856 SYT17Q9BSW7 474 aa20.97■□□□□ 0.95
CCDC88C-203ENST00000389856 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.97■□□□□ 0.95
CCDC88C-203ENST00000389856 MAD2L2Q9UI95 211 aa20.97■□□□□ 0.95
CCDC88C-203ENST00000389856 CNOT7Q9UIV1 285 aaKnown RBP20.97■□□□□ 0.95
CCDC88C-203ENST00000389856 SYNPO2Q9UMS6 1093 aa20.97■□□□□ 0.95
CCDC88C-203ENST00000389856 OTUD7BQ6GQQ9 843 aa20.96■□□□□ 0.95
CCDC88C-203ENST00000389856 GPC2Q8N158 579 aa20.96■□□□□ 0.95
CCDC88C-203ENST00000389856 CMTR1Q8N1G2 835 aaKnown RBP20.96■□□□□ 0.95
CCDC88C-203ENST00000389856 SPZ1Q9BXG8 430 aa20.96■□□□□ 0.95
CCDC88C-203ENST00000389856 FOXP1Q9H334 677 aaPredicted RBP20.96■□□□□ 0.95
CCDC88C-203ENST00000389856 DNAJC18Q9H819 358 aa20.96■□□□□ 0.95
CCDC88C-203ENST00000389856 NYAP2Q9P242 653 aa20.96■□□□□ 0.95
CCDC88C-203ENST00000389856 CLIP2Q9UDT6 1046 aa20.96■□□□□ 0.95
CCDC88C-203ENST00000389856 SCG2P13521 617 aa20.96■□□□□ 0.95
CCDC88C-203ENST00000389856 PFKFB3Q16875 520 aaPredicted RBP20.96■□□□□ 0.95
CCDC88C-203ENST00000389856 AIFM3Q96NN9 605 aa20.96■□□□□ 0.95
CCDC88C-203ENST00000389856 SH3GLB2Q9NR46 395 aa20.96■□□□□ 0.95
CCDC88C-203ENST00000389856 CNTNAP1P78357 1384 aa20.95■□□□□ 0.94
CCDC88C-203ENST00000389856 MYH4Q9Y623 1939 aa20.95■□□□□ 0.94
CCDC88C-203ENST00000389856 KLRF2D3W0D1 207 aa20.95■□□□□ 0.94
CCDC88C-203ENST00000389856 U2AF2P26368 475 aaKnown RBP eCLIP20.95■□□□□ 0.94
CCDC88C-203ENST00000389856 CALML3P27482 149 aa20.95■□□□□ 0.94
CCDC88C-203ENST00000389856 LEO1Q8WVC0 666 aaPredicted RBP20.95■□□□□ 0.94
CCDC88C-203ENST00000389856 MKL1Q969V6 931 aa20.95■□□□□ 0.94
CCDC88C-203ENST00000389856 HOOK2Q96ED9 719 aa20.95■□□□□ 0.94
CCDC88C-203ENST00000389856 KIF4BQ2VIQ3 1234 aa20.94■□□□□ 0.94
CCDC88C-203ENST00000389856 NBPF9Q3BBW0 867 aa20.94■□□□□ 0.94
CCDC88C-203ENST00000389856 GPATCH4Q5T3I0 446 aaKnown RBP20.94■□□□□ 0.94
CCDC88C-203ENST00000389856 MYSM1Q5VVJ2 828 aa20.94■□□□□ 0.94
CCDC88C-203ENST00000389856 FAM173BQ6P4H8 233 aa20.94■□□□□ 0.94
CCDC88C-203ENST00000389856 ZSCAN30Q86W11 494 aa20.94■□□□□ 0.94
CCDC88C-203ENST00000389856 CCDC148Q8NFR7 591 aa20.94■□□□□ 0.94
CCDC88C-203ENST00000389856 CCDC12Q8WUD4 166 aaPredicted RBP20.94■□□□□ 0.94
CCDC88C-203ENST00000389856 SEC63Q9UGP8 760 aaKnown RBP20.94■□□□□ 0.94
CCDC88C-203ENST00000389856 GUCY1A2P33402 732 aa20.93■□□□□ 0.94
CCDC88C-203ENST00000389856 ATP2B2Q01814 1243 aa20.93■□□□□ 0.94
CCDC88C-203ENST00000389856 ICA1Q05084 483 aa20.93■□□□□ 0.94
CCDC88C-203ENST00000389856 PKN1Q16512 942 aa20.93■□□□□ 0.94
CCDC88C-203ENST00000389856 DIS3L2Q8IYB7 885 aaKnown RBP20.93■□□□□ 0.94
CCDC88C-203ENST00000389856 RRP36Q96EU6 259 aaKnown RBP20.93■□□□□ 0.94
CCDC88C-203ENST00000389856 RTEL1Q9NZ71 1219 aa20.93■□□□□ 0.94
CCDC88C-203ENST00000389856 TFIP11Q9UBB9 837 aaKnown RBP20.93■□□□□ 0.94
CCDC88C-203ENST00000389856 MTMR7Q9Y216 660 aa20.93■□□□□ 0.94
CCDC88C-203ENST00000389856 SBF1O95248 1867 aa20.93■□□□□ 0.94
CCDC88C-203ENST00000389856 ZNF541Q9H0D2 1346 aa20.93■□□□□ 0.94
CCDC88C-203ENST00000389856 hCG_1984214I3L0E3 225 aa20.93■□□□□ 0.94
CCDC88C-203ENST00000389856 YEATS4O95619 227 aa20.93■□□□□ 0.94
CCDC88C-203ENST00000389856 PDHBP11177 359 aa20.93■□□□□ 0.94
CCDC88C-203ENST00000389856 KRT2P35908 639 aa20.93■□□□□ 0.94
CCDC88C-203ENST00000389856 PRELPP51888 382 aa20.93■□□□□ 0.94
CCDC88C-203ENST00000389856 GALNT17Q6IS24 598 aa20.93■□□□□ 0.94
CCDC88C-203ENST00000389856 APOBEC3FQ8IUX4 373 aaKnown RBP20.93■□□□□ 0.94
CCDC88C-203ENST00000389856 NOSTRINQ8IVI9 506 aa20.93■□□□□ 0.94
CCDC88C-203ENST00000389856 ZNF713Q8N859 430 aaPredicted RBP20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms