RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 STK36Q9NRP7 1315 aa31.16■■■□□ 2.58
MSX1-201ENST00000382723 STAG2Q8N3U4 1231 aa31.16■■■□□ 2.58
MSX1-201ENST00000382723 SRBD1Q8N5C6 995 aaKnown RBP31.16■■■□□ 2.58
MSX1-201ENST00000382723 KANSL2Q9H9L4 492 aa31.16■■■□□ 2.58
MSX1-201ENST00000382723 GJB4Q9NTQ9 266 aa31.16■■■□□ 2.58
MSX1-201ENST00000382723 GUCY1A2P33402 732 aa31.15■■■□□ 2.58
MSX1-201ENST00000382723 MCM4P33991 863 aa31.15■■■□□ 2.58
MSX1-201ENST00000382723 FUT2Q10981 343 aa31.15■■■□□ 2.58
MSX1-201ENST00000382723 OTUD7BQ6GQQ9 843 aa31.15■■■□□ 2.58
MSX1-201ENST00000382723 MAD2L2Q9UI95 211 aa31.15■■■□□ 2.58
MSX1-201ENST00000382723 PPP4R3BQ5MIZ7 849 aa31.14■■■□□ 2.58
MSX1-201ENST00000382723 EEF2P13639 858 aaKnown RBP31.14■■■□□ 2.57
MSX1-201ENST00000382723 ICA1Q05084 483 aa31.14■■■□□ 2.57
MSX1-201ENST00000382723 CLEC17AQ6ZS10 378 aa31.14■■■□□ 2.57
MSX1-201ENST00000382723 hCG_1642624A0A1W2PR95 340 aa31.13■■■□□ 2.57
MSX1-201ENST00000382723 GOLGA8HP0CJ92 632 aa31.13■■■□□ 2.57
MSX1-201ENST00000382723 AKAP17AQ02040 695 aaKnown RBP31.13■■■□□ 2.57
MSX1-201ENST00000382723 USP17L5A8MUK1 530 aa31.12■■■□□ 2.57
MSX1-201ENST00000382723 NBPF12Q5TAG4 269 aaPredicted RBP31.12■■■□□ 2.57
MSX1-201ENST00000382723 PRAMEF18Q5VWM3 479 aa31.12■■■□□ 2.57
MSX1-201ENST00000382723 USP17L2Q6R6M4 530 aa31.12■■■□□ 2.57
MSX1-201ENST00000382723 RNF26Q9BY78 433 aaPredicted RBP31.12■■■□□ 2.57
MSX1-201ENST00000382723 V9GY48 417 aaPredicted RBP31.12■■■□□ 2.57
MSX1-201ENST00000382723 GREB1LQ9C091 1923 aaPredicted RBP31.12■■■□□ 2.57
MSX1-201ENST00000382723 DEXIO95424 95 aa31.12■■■□□ 2.57
MSX1-201ENST00000382723 PARP1P09874 1014 aaKnown RBP31.12■■■□□ 2.57
MSX1-201ENST00000382723 MCTP1Q6DN14 999 aa31.12■■■□□ 2.57
MSX1-201ENST00000382723 WASF1Q92558 559 aa31.12■■■□□ 2.57
MSX1-201ENST00000382723 MAP3K10Q02779 954 aa31.11■■■□□ 2.57
MSX1-201ENST00000382723 FBXO18Q8NFZ0 1043 aa31.11■■■□□ 2.57
MSX1-201ENST00000382723 PIBF1Q8WXW3 757 aa31.11■■■□□ 2.57
MSX1-201ENST00000382723 NYAP2Q9P242 653 aa31.11■■■□□ 2.57
MSX1-201ENST00000382723 CNTNAP5Q8WYK1 1306 aa31.11■■■□□ 2.57
MSX1-201ENST00000382723 PALM3A6NDB9 673 aaPredicted RBP31.1■■■□□ 2.57
MSX1-201ENST00000382723 GNAQP50148 359 aa31.1■■■□□ 2.57
MSX1-201ENST00000382723 PRPF3O43395 683 aaKnown RBP31.1■■■□□ 2.57
MSX1-201ENST00000382723 PDHBP11177 359 aa31.1■■■□□ 2.57
MSX1-201ENST00000382723 SIAH1Q8IUQ4 282 aa31.1■■■□□ 2.57
MSX1-201ENST00000382723 L3MBTL3Q96JM7 780 aaPredicted RBP31.1■■■□□ 2.57
MSX1-201ENST00000382723 ATP6V1DQ9Y5K8 247 aa31.1■■■□□ 2.57
MSX1-201ENST00000382723 GLTPD2A6NH11 291 aa31.09■■■□□ 2.57
MSX1-201ENST00000382723 RAD21O60216 631 aa31.09■■■□□ 2.57
MSX1-201ENST00000382723 ZBTB21Q9ULJ3 1066 aa31.09■■■□□ 2.57
MSX1-201ENST00000382723 ZC3H4Q9UPT8 1303 aaKnown RBP31.09■■■□□ 2.57
MSX1-201ENST00000382723 KLRF2D3W0D1 207 aa31.08■■■□□ 2.57
MSX1-201ENST00000382723 CAP2P40123 477 aa31.08■■■□□ 2.57
MSX1-201ENST00000382723 FRMPD2Q68DX3 1309 aaPredicted RBP31.08■■■□□ 2.57
MSX1-201ENST00000382723 RESTQ13127 1097 aa31.08■■■□□ 2.57
MSX1-201ENST00000382723 TRIM29Q14134 588 aa31.08■■■□□ 2.57
MSX1-201ENST00000382723 MKL1Q969V6 931 aa31.08■■■□□ 2.57
MSX1-201ENST00000382723 FRMD4AQ9P2Q2 1039 aaPredicted RBP31.08■■■□□ 2.57
MSX1-201ENST00000382723 FAM173BQ6P4H8 233 aa31.07■■■□□ 2.56
MSX1-201ENST00000382723 CPVLQ9H3G5 476 aa31.07■■■□□ 2.56
MSX1-201ENST00000382723 PKN1Q16512 942 aa31.06■■■□□ 2.56
MSX1-201ENST00000382723 KRT40Q6A162 431 aa31.06■■■□□ 2.56
MSX1-201ENST00000382723 PHF20L1A8MW92 1017 aa31.06■■■□□ 2.56
MSX1-201ENST00000382723 LZTS2Q9BRK4 669 aa31.06■■■□□ 2.56
MSX1-201ENST00000382723 GOLGA6L22H0YM25 854 aa31.05■■■□□ 2.56
MSX1-201ENST00000382723 SNHG28P0DPA3 235 aa31.05■■■□□ 2.56
MSX1-201ENST00000382723 EPHX2P34913 555 aa31.05■■■□□ 2.56
MSX1-201ENST00000382723 SLC35G1Q2M3R5 365 aa31.05■■■□□ 2.56
MSX1-201ENST00000382723 DCPSQ96C86 337 aaKnown RBP31.05■■■□□ 2.56
MSX1-201ENST00000382723 ZSCAN16Q9H4T2 348 aaPredicted RBP31.05■■■□□ 2.56
MSX1-201ENST00000382723 GPCPD1Q9NPB8 672 aa31.05■■■□□ 2.56
MSX1-201ENST00000382723 PITPNM2Q9BZ72 1349 aa31.05■■■□□ 2.56
MSX1-201ENST00000382723 DDX11L8A8MPP1 907 aa31.04■■■□□ 2.56
MSX1-201ENST00000382723 DNM1Q05193 864 aaKnown RBP31.04■■■□□ 2.56
MSX1-201ENST00000382723 PPP2R3BQ9Y5P8 575 aa31.04■■■□□ 2.56
MSX1-201ENST00000382723 NCLP19338 710 aaKnown RBP31.04■■■□□ 2.56
MSX1-201ENST00000382723 CCDC96Q2M329 555 aa31.04■■■□□ 2.56
MSX1-201ENST00000382723 ASPRV1Q53RT3 343 aa31.04■■■□□ 2.56
MSX1-201ENST00000382723 ISY1Q9ULR0 285 aaKnown RBP31.04■■■□□ 2.56
MSX1-201ENST00000382723 CYTH3O43739 400 aa31.03■■■□□ 2.56
MSX1-201ENST00000382723 DCAF15Q66K64 600 aa31.03■■■□□ 2.56
MSX1-201ENST00000382723 UBA5Q9GZZ9 404 aa31.03■■■□□ 2.56
MSX1-201ENST00000382723 A0A1W2PRG0 241 aa31.02■■■□□ 2.56
MSX1-201ENST00000382723 SLFN13Q68D06 897 aa31.02■■■□□ 2.56
MSX1-201ENST00000382723 HOOK2Q96ED9 719 aa31.02■■■□□ 2.56
MSX1-201ENST00000382723 ARHGEF10LQ9HCE6 1279 aa31.02■■■□□ 2.56
MSX1-201ENST00000382723 KCNJ14Q9UNX9 436 aa31.02■■■□□ 2.56
MSX1-201ENST00000382723 CNPY2Q9Y2B0 182 aa31.02■■■□□ 2.56
MSX1-201ENST00000382723 ZNF543Q08ER8 600 aa31.02■■■□□ 2.56
MSX1-201ENST00000382723 USP50Q70EL3 339 aaPredicted RBP31.02■■■□□ 2.56
MSX1-201ENST00000382723 KCTD1Q719H9 257 aa31.02■■■□□ 2.56
MSX1-201ENST00000382723 VPS54Q9P1Q0 977 aa31.02■■■□□ 2.56
MSX1-201ENST00000382723 FZD1Q9UP38 647 aa31.02■■■□□ 2.56
MSX1-201ENST00000382723 ASNSP08243 561 aa31.01■■■□□ 2.55
MSX1-201ENST00000382723 ECE1P42892 770 aa31.01■■■□□ 2.55
MSX1-201ENST00000382723 DLK2Q6UY11 383 aa31.01■■■□□ 2.55
MSX1-201ENST00000382723 CCDC84Q86UT8 332 aaPredicted RBP31.01■■■□□ 2.55
MSX1-201ENST00000382723 SULF1Q8IWU6 871 aa31.01■■■□□ 2.55
MSX1-201ENST00000382723 ACER1Q8TDN7 264 aa31.01■■■□□ 2.55
MSX1-201ENST00000382723 ZNF341Q9BYN7 854 aa31.01■■■□□ 2.55
MSX1-201ENST00000382723 GDPD2Q9HCC8 539 aa31.01■■■□□ 2.55
MSX1-201ENST00000382723 VAT1LQ9HCJ6 419 aa31.01■■■□□ 2.55
MSX1-201ENST00000382723 MYH4Q9Y623 1939 aa31.01■■■□□ 2.55
MSX1-201ENST00000382723 F5H6K3 240 aa31■■■□□ 2.55
MSX1-201ENST00000382723 KLRC3Q07444 240 aa31■■■□□ 2.55
MSX1-201ENST00000382723 SPZ1Q9BXG8 430 aa31■■■□□ 2.55
MSX1-201ENST00000382723 ADM5C9JUS6 153 aa31■■■□□ 2.55
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms