RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 VEPH1Q14D04 833 aa10.31□□□□□ -0.76
LIMCH1-202ENST00000381753 TTC22Q5TAA0 569 aa10.31□□□□□ -0.76
LIMCH1-202ENST00000381753 COL23A1Q86Y22 540 aaPredicted RBP10.31□□□□□ -0.76
LIMCH1-202ENST00000381753 ROBO2Q9HCK4 1378 aa10.31□□□□□ -0.76
LIMCH1-202ENST00000381753 KRT9P35527 623 aa10.31□□□□□ -0.76
LIMCH1-202ENST00000381753 CCDC65Q8IXS2 484 aa10.31□□□□□ -0.76
LIMCH1-202ENST00000381753 WDR33Q9C0J8 1336 aaKnown RBP10.31□□□□□ -0.76
LIMCH1-202ENST00000381753 PZPP20742 1482 aa10.31□□□□□ -0.76
LIMCH1-202ENST00000381753 PSMD14O00487 310 aa10.31□□□□□ -0.76
LIMCH1-202ENST00000381753 YWHAEP62258 255 aaKnown RBP10.31□□□□□ -0.76
LIMCH1-202ENST00000381753 TBC1D8BQ0IIM8 1120 aa10.31□□□□□ -0.76
LIMCH1-202ENST00000381753 ZNF467Q7Z7K2 595 aaPredicted RBP10.31□□□□□ -0.76
LIMCH1-202ENST00000381753 THEM5Q8N1Q8 247 aa10.31□□□□□ -0.76
LIMCH1-202ENST00000381753 ENGASEQ8NFI3 743 aa10.31□□□□□ -0.76
LIMCH1-202ENST00000381753 UPF1Q92900 1129 aaKnown RBP eCLIP10.31□□□□□ -0.76
LIMCH1-202ENST00000381753 PHKBQ93100 1093 aa10.31□□□□□ -0.76
LIMCH1-202ENST00000381753 STARD7Q9NQZ5 370 aa10.31□□□□□ -0.76
LIMCH1-202ENST00000381753 NEMP1O14524 444 aa10.3□□□□□ -0.76
LIMCH1-202ENST00000381753 NNMTP40261 264 aa10.3□□□□□ -0.76
LIMCH1-202ENST00000381753 HMGCS2P54868 508 aa10.3□□□□□ -0.76
LIMCH1-202ENST00000381753 RRAGBQ5VZM2 374 aa10.3□□□□□ -0.76
LIMCH1-202ENST00000381753 CCDC91Q7Z6B0 441 aa10.3□□□□□ -0.76
LIMCH1-202ENST00000381753 SLC7A3Q8WY07 619 aa10.3□□□□□ -0.76
LIMCH1-202ENST00000381753 RMND1Q9NWS8 449 aa10.3□□□□□ -0.76
LIMCH1-202ENST00000381753 PQBP1O60828 265 aaKnown RBP10.3□□□□□ -0.76
LIMCH1-202ENST00000381753 GPSM2P81274 684 aa10.3□□□□□ -0.76
LIMCH1-202ENST00000381753 PLCB4Q15147 1175 aa10.3□□□□□ -0.76
LIMCH1-202ENST00000381753 DAAM2Q86T65 1068 aa10.3□□□□□ -0.76
LIMCH1-202ENST00000381753 C8orf58Q8NAV2 365 aa10.3□□□□□ -0.76
LIMCH1-202ENST00000381753 LRRC2Q9BYS8 371 aa10.3□□□□□ -0.76
LIMCH1-202ENST00000381753 SERPINB13Q9UIV8 391 aa10.3□□□□□ -0.76
LIMCH1-202ENST00000381753 ZNF532Q9HCE3 1301 aa10.3□□□□□ -0.76
LIMCH1-202ENST00000381753 USP17L12C9JPN9 530 aa10.3□□□□□ -0.76
LIMCH1-202ENST00000381753 USP17L21D6R901 530 aa10.3□□□□□ -0.76
LIMCH1-202ENST00000381753 RECQLP46063 649 aaPredicted RBP10.3□□□□□ -0.76
LIMCH1-202ENST00000381753 PPP2R5DQ14738 602 aa10.3□□□□□ -0.76
LIMCH1-202ENST00000381753 MCTP2Q6DN12 878 aa10.3□□□□□ -0.76
LIMCH1-202ENST00000381753 DTHD1Q6ZMT9 781 aa10.3□□□□□ -0.76
LIMCH1-202ENST00000381753 FERMT3Q86UX7 667 aa10.3□□□□□ -0.76
LIMCH1-202ENST00000381753 PLA2G4DQ86XP0 818 aa10.3□□□□□ -0.76
LIMCH1-202ENST00000381753 SLF1Q9BQI6 1058 aa10.3□□□□□ -0.76
LIMCH1-202ENST00000381753 MYOZ2Q9NPC6 264 aa10.3□□□□□ -0.76
LIMCH1-202ENST00000381753 SLC12A6Q9UHW9 1150 aa10.3□□□□□ -0.76
LIMCH1-202ENST00000381753 CPA4Q9UI42 421 aa10.3□□□□□ -0.76
LIMCH1-202ENST00000381753 STAMBPO95630 424 aa10.3□□□□□ -0.76
LIMCH1-202ENST00000381753 TNNI1P19237 187 aa10.3□□□□□ -0.76
LIMCH1-202ENST00000381753 RNF207Q6ZRF8 634 aa10.3□□□□□ -0.76
LIMCH1-202ENST00000381753 ATP6V0A1Q93050 837 aa10.3□□□□□ -0.76
LIMCH1-202ENST00000381753 SYT17Q9BSW7 474 aa10.3□□□□□ -0.76
LIMCH1-202ENST00000381753 PSTPIP2Q9H939 334 aa10.3□□□□□ -0.76
LIMCH1-202ENST00000381753 COPRSQ9NQ92 184 aa10.3□□□□□ -0.76
LIMCH1-202ENST00000381753 IBTKQ9P2D0 1353 aaPredicted RBP10.3□□□□□ -0.76
LIMCH1-202ENST00000381753 MAST1Q9Y2H9 1570 aa10.3□□□□□ -0.76
LIMCH1-202ENST00000381753 BFSP2Q13515 415 aa10.3□□□□□ -0.76
LIMCH1-202ENST00000381753 RPUSD2Q8IZ73 545 aaKnown RBP10.3□□□□□ -0.76
LIMCH1-202ENST00000381753 SNX25Q9H3E2 840 aa10.3□□□□□ -0.76
LIMCH1-202ENST00000381753 ARGLU1Q9NWB6 273 aaPredicted RBP10.3□□□□□ -0.76
LIMCH1-202ENST00000381753 MAP3K4Q9Y6R4 1608 aa10.3□□□□□ -0.76
LIMCH1-202ENST00000381753 H0YCG3 227 aa10.29□□□□□ -0.76
LIMCH1-202ENST00000381753 DYNC1LI2O43237 492 aaPredicted RBP10.29□□□□□ -0.76
LIMCH1-202ENST00000381753 USO1O60763 962 aaKnown RBP10.29□□□□□ -0.76
LIMCH1-202ENST00000381753 LETM1O95202 739 aaPredicted RBP10.29□□□□□ -0.76
LIMCH1-202ENST00000381753 RPL13P26373 211 aaKnown RBP10.29□□□□□ -0.76
LIMCH1-202ENST00000381753 PRPF4BQ13523 1007 aaKnown RBP10.29□□□□□ -0.76
LIMCH1-202ENST00000381753 TSTA3Q13630 321 aaPredicted RBP10.29□□□□□ -0.76
LIMCH1-202ENST00000381753 STXBP2Q15833 593 aa10.29□□□□□ -0.76
LIMCH1-202ENST00000381753 GNASQ5JWF2 1037 aa10.29□□□□□ -0.76
LIMCH1-202ENST00000381753 TSHZ3Q63HK5 1081 aa10.29□□□□□ -0.76
LIMCH1-202ENST00000381753 UBE2OQ9C0C9 1292 aaKnown RBP10.29□□□□□ -0.76
LIMCH1-202ENST00000381753 CLSTN2Q9H4D0 955 aa10.29□□□□□ -0.76
LIMCH1-202ENST00000381753 CA12O43570 354 aa10.29□□□□□ -0.76
LIMCH1-202ENST00000381753 ITKQ08881 620 aa10.29□□□□□ -0.76
LIMCH1-202ENST00000381753 CUL4BQ13620 913 aa10.29□□□□□ -0.76
LIMCH1-202ENST00000381753 HSP90B2PQ58FF3 399 aa10.29□□□□□ -0.76
LIMCH1-202ENST00000381753 MYCT1Q8N699 235 aa10.29□□□□□ -0.76
LIMCH1-202ENST00000381753 ATG3Q9NT62 314 aa10.29□□□□□ -0.76
LIMCH1-202ENST00000381753 DNM3Q9UQ16 869 aa10.29□□□□□ -0.76
LIMCH1-202ENST00000381753 ZCCHC11Q5TAX3 1644 aaKnown RBP10.29□□□□□ -0.76
LIMCH1-202ENST00000381753 DNA2P51530 1060 aa10.29□□□□□ -0.76
LIMCH1-202ENST00000381753 SUSD4Q5VX71 490 aa10.29□□□□□ -0.76
LIMCH1-202ENST00000381753 RSBN1LQ6PCB5 846 aaPredicted RBP10.29□□□□□ -0.76
LIMCH1-202ENST00000381753 USP50Q70EL3 339 aaPredicted RBP10.29□□□□□ -0.76
LIMCH1-202ENST00000381753 NECAB2Q7Z6G3 386 aa10.29□□□□□ -0.76
LIMCH1-202ENST00000381753 KLHDC4Q8TBB5 520 aa10.29□□□□□ -0.76
LIMCH1-202ENST00000381753 MEIS3Q99687 375 aa10.29□□□□□ -0.76
LIMCH1-202ENST00000381753 MAP3K20Q9NYL2 800 aaKnown RBP10.29□□□□□ -0.76
LIMCH1-202ENST00000381753 ANKFY1Q9P2R3 1169 aa10.29□□□□□ -0.76
LIMCH1-202ENST00000381753 PALD1Q9ULE6 856 aa10.29□□□□□ -0.76
LIMCH1-202ENST00000381753 RIPOR2Q9Y4F9 1068 aa10.29□□□□□ -0.76
LIMCH1-202ENST00000381753 TMCO5BA8MYB1 307 aa10.29□□□□□ -0.76
LIMCH1-202ENST00000381753 CTDSPL2Q05D32 466 aa10.29□□□□□ -0.76
LIMCH1-202ENST00000381753 TNNI3KQ59H18 835 aa10.29□□□□□ -0.76
LIMCH1-202ENST00000381753 CEP135Q66GS9 1140 aa10.29□□□□□ -0.76
LIMCH1-202ENST00000381753 PLIN2Q99541 437 aa10.29□□□□□ -0.76
LIMCH1-202ENST00000381753 PCDHB7Q9Y5E2 793 aa10.29□□□□□ -0.76
LIMCH1-202ENST00000381753 SMTNL1A8MU46 457 aa10.28□□□□□ -0.76
LIMCH1-202ENST00000381753 B4E1Z4 1266 aa10.28□□□□□ -0.76
LIMCH1-202ENST00000381753 STAG3L1P0CL83 205 aa10.28□□□□□ -0.76
LIMCH1-202ENST00000381753 RXRAP19793 462 aa10.28□□□□□ -0.76
LIMCH1-202ENST00000381753 NFKBIAP25963 317 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms