RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 KDM3AQ9Y4C1 1321 aa10.2□□□□□ -0.78
VPS13A-203ENST00000360280 MRPL44Q9H9J2 332 aaKnown RBP10.2□□□□□ -0.78
VPS13A-203ENST00000360280 SYNJ1O43426 1573 aa10.2□□□□□ -0.78
VPS13A-203ENST00000360280 MAGEA1P43355 309 aa10.2□□□□□ -0.78
VPS13A-203ENST00000360280 TTI1O43156 1089 aa10.2□□□□□ -0.78
VPS13A-203ENST00000360280 RINT1Q6NUQ1 792 aa10.2□□□□□ -0.78
VPS13A-203ENST00000360280 ANKRD44Q8N8A2 993 aa10.2□□□□□ -0.78
VPS13A-203ENST00000360280 HDAC11Q96DB2 347 aa10.2□□□□□ -0.78
VPS13A-203ENST00000360280 ARHGEF18Q6ZSZ5 1173 aa10.2□□□□□ -0.78
VPS13A-203ENST00000360280 TRIML1Q8N9V2 468 aa10.2□□□□□ -0.78
VPS13A-203ENST00000360280 PALMDQ9NP74 551 aa10.2□□□□□ -0.78
VPS13A-203ENST00000360280 MAP3K1Q13233 1512 aa10.2□□□□□ -0.78
VPS13A-203ENST00000360280 XRCC5P13010 732 aaKnown RBP10.2□□□□□ -0.78
VPS13A-203ENST00000360280 CASP2P42575 452 aa10.2□□□□□ -0.78
VPS13A-203ENST00000360280 C2CD5Q86YS7 1000 aa10.2□□□□□ -0.78
VPS13A-203ENST00000360280 HYOU1Q9Y4L1 999 aa10.2□□□□□ -0.78
VPS13A-203ENST00000360280 ZFXP17010 805 aaPredicted RBP10.2□□□□□ -0.78
VPS13A-203ENST00000360280 POSTNQ15063 836 aa10.2□□□□□ -0.78
VPS13A-203ENST00000360280 CWF19L2Q2TBE0 894 aaKnown RBP10.2□□□□□ -0.78
VPS13A-203ENST00000360280 RAB44Q7Z6P3 723 aaPredicted RBP10.2□□□□□ -0.78
VPS13A-203ENST00000360280 IL1RL1Q01638 556 aa10.2□□□□□ -0.78
VPS13A-203ENST00000360280 CUTAO60888 179 aa10.19□□□□□ -0.78
VPS13A-203ENST00000360280 SERPINI2O75830 405 aa10.19□□□□□ -0.78
VPS13A-203ENST00000360280 ARAP1Q96P48 1450 aa10.19□□□□□ -0.78
VPS13A-203ENST00000360280 HARSP12081 509 aaKnown RBP10.19□□□□□ -0.78
VPS13A-203ENST00000360280 NUDCD3Q8IVD9 361 aa10.19□□□□□ -0.78
VPS13A-203ENST00000360280 OSCARQ8IYS5 282 aa10.19□□□□□ -0.78
VPS13A-203ENST00000360280 STX1BP61266 288 aa10.19□□□□□ -0.78
VPS13A-203ENST00000360280 TCEANC2Q96MN5 208 aa10.19□□□□□ -0.78
VPS13A-203ENST00000360280 CCDC92Q53HC0 331 aaPredicted RBP10.19□□□□□ -0.78
VPS13A-203ENST00000360280 NCOA1Q15788 1441 aa10.19□□□□□ -0.78
VPS13A-203ENST00000360280 BSPRYQ5W0U4 402 aa10.19□□□□□ -0.78
VPS13A-203ENST00000360280 ZNF202O95125 648 aa10.19□□□□□ -0.78
VPS13A-203ENST00000360280 TRPC6Q9Y210 931 aa10.19□□□□□ -0.78
VPS13A-203ENST00000360280 IBTKQ9P2D0 1353 aaPredicted RBP10.19□□□□□ -0.78
VPS13A-203ENST00000360280 MAP7D3Q8IWC1 876 aa10.19□□□□□ -0.78
VPS13A-203ENST00000360280 KCNK3O14649 394 aa10.19□□□□□ -0.78
VPS13A-203ENST00000360280 RAB20Q9NX57 234 aa10.19□□□□□ -0.78
VPS13A-203ENST00000360280 HADHQ16836 314 aaKnown RBP10.19□□□□□ -0.78
VPS13A-203ENST00000360280 HACE1Q8IYU2 909 aa10.19□□□□□ -0.78
VPS13A-203ENST00000360280 TSC22D3Q99576 134 aa10.19□□□□□ -0.78
VPS13A-203ENST00000360280 ANAPC5Q9UJX4 755 aa10.19□□□□□ -0.78
VPS13A-203ENST00000360280 SCYL1Q96KG9 808 aa10.19□□□□□ -0.78
VPS13A-203ENST00000360280 LZTS2Q9BRK4 669 aa10.19□□□□□ -0.78
VPS13A-203ENST00000360280 HELLSQ9NRZ9 838 aa10.19□□□□□ -0.78
VPS13A-203ENST00000360280 INTS9Q9NV88 658 aaKnown RBP10.19□□□□□ -0.78
VPS13A-203ENST00000360280 STAT1P42224 750 aa10.19□□□□□ -0.78
VPS13A-203ENST00000360280 ECE1P42892 770 aa10.19□□□□□ -0.78
VPS13A-203ENST00000360280 ZNF449Q6P9G9 518 aa10.19□□□□□ -0.78
VPS13A-203ENST00000360280 TMCO5AQ8N6Q1 288 aa10.19□□□□□ -0.78
VPS13A-203ENST00000360280 ZBTB24O43167 697 aaPredicted RBP10.18□□□□□ -0.78
VPS13A-203ENST00000360280 MCF2P10911 925 aa10.18□□□□□ -0.78
VPS13A-203ENST00000360280 GFAPP14136 432 aa10.18□□□□□ -0.78
VPS13A-203ENST00000360280 IFNL2Q8IZJ0 200 aa10.18□□□□□ -0.78
VPS13A-203ENST00000360280 ARHGEF10LQ9HCE6 1279 aa10.18□□□□□ -0.78
VPS13A-203ENST00000360280 IFNB1P01574 187 aa10.18□□□□□ -0.78
VPS13A-203ENST00000360280 INHBAP08476 426 aa10.18□□□□□ -0.78
VPS13A-203ENST00000360280 ANO1Q5XXA6 986 aa10.18□□□□□ -0.78
VPS13A-203ENST00000360280 CNOT10Q9H9A5 744 aaKnown RBP10.18□□□□□ -0.78
VPS13A-203ENST00000360280 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.18□□□□□ -0.78
VPS13A-203ENST00000360280 TPCN1Q9ULQ1 816 aa10.18□□□□□ -0.78
VPS13A-203ENST00000360280 PRPF6O94906 941 aaKnown RBP10.18□□□□□ -0.78
VPS13A-203ENST00000360280 OCA2Q04671 838 aa10.18□□□□□ -0.78
VPS13A-203ENST00000360280 DMTNQ08495 405 aa10.18□□□□□ -0.78
VPS13A-203ENST00000360280 ZNF622Q969S3 477 aaKnown RBP eCLIP10.18□□□□□ -0.782e-6■■□□□ 14.3
VPS13A-203ENST00000360280 SETDB2Q96T68 719 aa10.18□□□□□ -0.78
VPS13A-203ENST00000360280 FGFR1OP2Q9NVK5 253 aa10.18□□□□□ -0.78
VPS13A-203ENST00000360280 LONP1P36776 959 aaKnown RBP10.18□□□□□ -0.78
VPS13A-203ENST00000360280 NELFBQ8WX92 580 aa10.18□□□□□ -0.78
VPS13A-203ENST00000360280 NT5C3AQ9H0P0 336 aa10.18□□□□□ -0.78
VPS13A-203ENST00000360280 CALCRLQ16602 461 aa10.18□□□□□ -0.78
VPS13A-203ENST00000360280 TYW1BQ6NUM6 668 aa10.18□□□□□ -0.78
VPS13A-203ENST00000360280 MAGEB6Q8N7X4 407 aa10.18□□□□□ -0.78
VPS13A-203ENST00000360280 PLIN2Q99541 437 aa10.18□□□□□ -0.78
VPS13A-203ENST00000360280 CCPG1Q9ULG6 757 aa10.18□□□□□ -0.78
VPS13A-203ENST00000360280 N4BP1O75113 896 aaKnown RBP10.18□□□□□ -0.78
VPS13A-203ENST00000360280 MBIPQ9NS73 344 aa10.18□□□□□ -0.78
VPS13A-203ENST00000360280 GSTA4O15217 222 aa10.18□□□□□ -0.78
VPS13A-203ENST00000360280 EFCAB14O75071 495 aa10.18□□□□□ -0.78
VPS13A-203ENST00000360280 ATF2P15336 505 aa10.18□□□□□ -0.78
VPS13A-203ENST00000360280 NME8Q8N427 588 aa10.18□□□□□ -0.78
VPS13A-203ENST00000360280 MRFAP1Q9Y605 127 aa10.18□□□□□ -0.78
VPS13A-203ENST00000360280 EEF1GP26641 437 aaKnown RBP10.18□□□□□ -0.78
VPS13A-203ENST00000360280 ZNF445P59923 1031 aa10.18□□□□□ -0.78
VPS13A-203ENST00000360280 IFT122Q9HBG6 1241 aa10.18□□□□□ -0.78
VPS13A-203ENST00000360280 PRPSAP1Q14558 356 aa10.18□□□□□ -0.78
VPS13A-203ENST00000360280 FAM186BQ8IYM0 893 aa10.18□□□□□ -0.78
VPS13A-203ENST00000360280 CHPF2Q9P2E5 772 aa10.18□□□□□ -0.78
VPS13A-203ENST00000360280 CREB3O43889 395 aa10.18□□□□□ -0.78
VPS13A-203ENST00000360280 EXOC3O60645 756 aa10.18□□□□□ -0.78
VPS13A-203ENST00000360280 ATF7P17544 494 aaPredicted RBP10.18□□□□□ -0.78
VPS13A-203ENST00000360280 PIP4K2CQ8TBX8 421 aa10.18□□□□□ -0.78
VPS13A-203ENST00000360280 TCP1P17987 556 aaKnown RBP10.17□□□□□ -0.78
VPS13A-203ENST00000360280 PPP2R5BQ15173 497 aa10.17□□□□□ -0.78
VPS13A-203ENST00000360280 ANLNQ9NQW6 1124 aa10.17□□□□□ -0.78
VPS13A-203ENST00000360280 ATP5J2-PTCD1G3V325 749 aa10.17□□□□□ -0.78
VPS13A-203ENST00000360280 IGHDP01880 384 aa10.17□□□□□ -0.78
VPS13A-203ENST00000360280 RPSAP08865 295 aaKnown RBP10.17□□□□□ -0.78
VPS13A-203ENST00000360280 ARHGDIAP52565 204 aa10.17□□□□□ -0.78
VPS13A-203ENST00000360280 TMEM87BQ96K49 555 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 88.7 ms