RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 CNTNAP5Q8WYK1 1306 aa21.67■■□□□ 1.06
CLN3-204ENST00000357857 PRPF3O43395 683 aaKnown RBP21.67■■□□□ 1.06
CLN3-204ENST00000357857 GRIN3BO60391 1043 aa21.67■■□□□ 1.06
CLN3-204ENST00000357857 LMOD1P29536 600 aaPredicted RBP21.67■■□□□ 1.06
CLN3-204ENST00000357857 RESTQ13127 1097 aa21.67■■□□□ 1.06
CLN3-204ENST00000357857 SHROOM1Q2M3G4 852 aaPredicted RBP21.67■■□□□ 1.06
CLN3-204ENST00000357857 LRRC47Q8N1G4 583 aaKnown RBP21.67■■□□□ 1.06
CLN3-204ENST00000357857 ZSCAN16Q9H4T2 348 aaPredicted RBP21.67■■□□□ 1.06
CLN3-204ENST00000357857 CABP5Q9NP86 173 aa21.67■■□□□ 1.06
CLN3-204ENST00000357857 SCAF8Q9UPN6 1271 aaKnown RBP21.67■■□□□ 1.06
CLN3-204ENST00000357857 BAZ2BQ9UIF8 2168 aaKnown RBP21.67■■□□□ 1.06
CLN3-204ENST00000357857 PTMSP20962 102 aa21.66■■□□□ 1.06
CLN3-204ENST00000357857 RRP1BQ14684 758 aaKnown RBP21.66■■□□□ 1.06
CLN3-204ENST00000357857 OTUD7BQ6GQQ9 843 aa21.66■■□□□ 1.06
CLN3-204ENST00000357857 APOBEC3FQ8IUX4 373 aaKnown RBP21.66■■□□□ 1.06
CLN3-204ENST00000357857 PALM3A6NDB9 673 aaPredicted RBP21.66■■□□□ 1.06
CLN3-204ENST00000357857 UBE2Q2LH0YL09 131 aa21.66■■□□□ 1.06
CLN3-204ENST00000357857 PARP1P09874 1014 aaKnown RBP21.66■■□□□ 1.06
CLN3-204ENST00000357857 GUCY1A2P33402 732 aa21.66■■□□□ 1.06
CLN3-204ENST00000357857 ATP2B2Q01814 1243 aa21.66■■□□□ 1.06
CLN3-204ENST00000357857 MAP3K10Q02779 954 aa21.66■■□□□ 1.06
CLN3-204ENST00000357857 SEPT2Q15019 361 aa21.66■■□□□ 1.06
CLN3-204ENST00000357857 ANGEL2Q5VTE6 544 aaKnown RBP21.66■■□□□ 1.06
CLN3-204ENST00000357857 STAG2Q8N3U4 1231 aa21.66■■□□□ 1.06
CLN3-204ENST00000357857 TEPSINQ96N21 525 aa21.66■■□□□ 1.06
CLN3-204ENST00000357857 NYAP2Q9P242 653 aa21.66■■□□□ 1.06
CLN3-204ENST00000357857 ATAD5Q96QE3 1844 aa21.65■■□□□ 1.06
CLN3-204ENST00000357857 GH2P01242 217 aa21.65■■□□□ 1.06
CLN3-204ENST00000357857 TRIM29Q14134 588 aa21.65■■□□□ 1.06
CLN3-204ENST00000357857 MIGA2Q7L4E1 593 aa21.65■■□□□ 1.06
CLN3-204ENST00000357857 LZTS2Q9BRK4 669 aa21.65■■□□□ 1.06
CLN3-204ENST00000357857 DEFB129Q9H1M3 183 aa21.65■■□□□ 1.06
CLN3-204ENST00000357857 GJB4Q9NTQ9 266 aa21.65■■□□□ 1.06
CLN3-204ENST00000357857 V9GY48 417 aaPredicted RBP21.65■■□□□ 1.06
CLN3-204ENST00000357857 POLR2AP24928 1970 aaKnown RBP21.65■■□□□ 1.06
CLN3-204ENST00000357857 EEF2P13639 858 aaKnown RBP21.64■■□□□ 1.06
CLN3-204ENST00000357857 ICA1Q05084 483 aa21.64■■□□□ 1.06
CLN3-204ENST00000357857 KRT40Q6A162 431 aa21.64■■□□□ 1.06
CLN3-204ENST00000357857 DPY19L2Q6NUT2 758 aa21.64■■□□□ 1.06
CLN3-204ENST00000357857 ADARB2Q9NS39 739 aaKnown RBP21.64■■□□□ 1.06
CLN3-204ENST00000357857 PDHBP11177 359 aa21.63■■□□□ 1.05
CLN3-204ENST00000357857 HIRAP54198 1017 aaPredicted RBP21.63■■□□□ 1.05
CLN3-204ENST00000357857 JAG1P78504 1218 aa21.63■■□□□ 1.05
CLN3-204ENST00000357857 USP17L2Q6R6M4 530 aa21.63■■□□□ 1.05
CLN3-204ENST00000357857 RASGRP2Q7LDG7 609 aa21.63■■□□□ 1.05
CLN3-204ENST00000357857 MKL1Q969V6 931 aa21.63■■□□□ 1.05
CLN3-204ENST00000357857 ANP32EQ9BTT0 268 aa21.63■■□□□ 1.05
CLN3-204ENST00000357857 ZC3H4Q9UPT8 1303 aaKnown RBP21.63■■□□□ 1.05
CLN3-204ENST00000357857 USP17L5A8MUK1 530 aa21.63■■□□□ 1.05
CLN3-204ENST00000357857 DNM1Q05193 864 aaKnown RBP21.63■■□□□ 1.05
CLN3-204ENST00000357857 PKN1Q16512 942 aa21.63■■□□□ 1.05
CLN3-204ENST00000357857 GGA3Q9NZ52 723 aa21.63■■□□□ 1.05
CLN3-204ENST00000357857 RBM27Q9P2N5 1060 aaKnown RBP21.63■■□□□ 1.05
CLN3-204ENST00000357857 KLRF2D3W0D1 207 aa21.62■■□□□ 1.05
CLN3-204ENST00000357857 GOLGA8HP0CJ92 632 aa21.62■■□□□ 1.05
CLN3-204ENST00000357857 SNHG28P0DPA3 235 aa21.62■■□□□ 1.05
CLN3-204ENST00000357857 ASPRV1Q53RT3 343 aa21.62■■□□□ 1.05
CLN3-204ENST00000357857 CNPY2Q9Y2B0 182 aa21.62■■□□□ 1.05
CLN3-204ENST00000357857 hCG_1642624A0A1W2PR95 340 aa21.61■■□□□ 1.05
CLN3-204ENST00000357857 DCAF8L1A6NGE4 600 aa21.61■■□□□ 1.05
CLN3-204ENST00000357857 NCLP19338 710 aaKnown RBP21.61■■□□□ 1.05
CLN3-204ENST00000357857 FAM173BQ6P4H8 233 aa21.61■■□□□ 1.05
CLN3-204ENST00000357857 SIAH1Q8IUQ4 282 aa21.61■■□□□ 1.05
CLN3-204ENST00000357857 ZBTB21Q9ULJ3 1066 aa21.61■■□□□ 1.05
CLN3-204ENST00000357857 XBP1P17861 261 aa21.6■■□□□ 1.05
CLN3-204ENST00000357857 CAP2P40123 477 aa21.6■■□□□ 1.05
CLN3-204ENST00000357857 SPZ1Q9BXG8 430 aa21.6■■□□□ 1.05
CLN3-204ENST00000357857 SMARCA1P28370 1054 aa21.6■■□□□ 1.05
CLN3-204ENST00000357857 KRT85P78386 507 aa21.6■■□□□ 1.05
CLN3-204ENST00000357857 KIF23Q02241 960 aaPredicted RBP21.6■■□□□ 1.05
CLN3-204ENST00000357857 L3MBTL3Q96JM7 780 aaPredicted RBP21.6■■□□□ 1.05
CLN3-204ENST00000357857 LMBRD1Q9NUN5 540 aa21.6■■□□□ 1.05
CLN3-204ENST00000357857 PPP2R3BQ9Y5P8 575 aa21.6■■□□□ 1.05
CLN3-204ENST00000357857 FRMPD2Q68DX3 1309 aaPredicted RBP21.59■■□□□ 1.05
CLN3-204ENST00000357857 PITPNM2Q9BZ72 1349 aa21.59■■□□□ 1.05
CLN3-204ENST00000357857 PRPF40AO75400 957 aaKnown RBP21.59■■□□□ 1.05
CLN3-204ENST00000357857 SCG2P13521 617 aa21.59■■□□□ 1.05
CLN3-204ENST00000357857 ZNF543Q08ER8 600 aa21.59■■□□□ 1.05
CLN3-204ENST00000357857 PFKFB3Q16875 520 aaPredicted RBP21.59■■□□□ 1.05
CLN3-204ENST00000357857 SLC35G1Q2M3R5 365 aa21.59■■□□□ 1.05
CLN3-204ENST00000357857 NBPF12Q5TAG4 269 aaPredicted RBP21.59■■□□□ 1.05
CLN3-204ENST00000357857 HOOK2Q96ED9 719 aa21.59■■□□□ 1.05
CLN3-204ENST00000357857 CYTH3O43739 400 aa21.58■■□□□ 1.05
CLN3-204ENST00000357857 MMP1P03956 469 aa21.58■■□□□ 1.05
CLN3-204ENST00000357857 SAFBQ15424 915 aaKnown RBP eCLIP21.58■■□□□ 1.05
CLN3-204ENST00000357857 DCAF15Q66K64 600 aa21.58■■□□□ 1.05
CLN3-204ENST00000357857 BRAPQ7Z569 592 aa21.58■■□□□ 1.05
CLN3-204ENST00000357857 PIBF1Q8WXW3 757 aa21.58■■□□□ 1.05
CLN3-204ENST00000357857 GDPD2Q9HCC8 539 aa21.58■■□□□ 1.05
CLN3-204ENST00000357857 ARHGEF10LQ9HCE6 1279 aa21.58■■□□□ 1.05
CLN3-204ENST00000357857 SYNPO2Q9UMS6 1093 aa21.58■■□□□ 1.05
CLN3-204ENST00000357857 PHF20L1A8MW92 1017 aa21.58■■□□□ 1.04
CLN3-204ENST00000357857 KIF28PB7ZC32 967 aa21.58■■□□□ 1.04
CLN3-204ENST00000357857 FIBPO43427 364 aa21.58■■□□□ 1.04
CLN3-204ENST00000357857 CSPP1Q1MSJ5 1256 aa21.58■■□□□ 1.04
CLN3-204ENST00000357857 CCDC96Q2M329 555 aa21.58■■□□□ 1.04
CLN3-204ENST00000357857 GPATCH4Q5T3I0 446 aaKnown RBP21.58■■□□□ 1.04
CLN3-204ENST00000357857 TMEM87AQ8NBN3 555 aa21.58■■□□□ 1.04
CLN3-204ENST00000357857 DCAF4Q8WV16 495 aa21.58■■□□□ 1.04
CLN3-204ENST00000357857 VPS54Q9P1Q0 977 aa21.58■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms