RNA–Protein interactions for RNA: ENST00000343575.10

CXCL12-201, Transcript of C-X-C motif chemokine ligand 12, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CXCL12, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-201ENST00000343575 CALM1P0DP23 149 aa17.08■□□□□ 0.33
CXCL12-201ENST00000343575 CALM2P0DP24 149 aa17.08■□□□□ 0.33
CXCL12-201ENST00000343575 CALM3P0DP25 149 aa17.08■□□□□ 0.33
CXCL12-201ENST00000343575 PPP2R5BQ15173 497 aa17.08■□□□□ 0.33
CXCL12-201ENST00000343575 SLC35G1Q2M3R5 365 aa17.08■□□□□ 0.33
CXCL12-201ENST00000343575 TMEM179Q6ZVK1 233 aa17.08■□□□□ 0.33
CXCL12-201ENST00000343575 STAG2Q8N3U4 1231 aa17.08■□□□□ 0.33
CXCL12-201ENST00000343575 CHMP4CQ96CF2 233 aa17.08■□□□□ 0.33
CXCL12-201ENST00000343575 MAP3K14Q99558 947 aa17.08■□□□□ 0.33
CXCL12-201ENST00000343575 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.08■□□□□ 0.33
CXCL12-201ENST00000343575 CLIP2Q9UDT6 1046 aa17.08■□□□□ 0.33
CXCL12-201ENST00000343575 MAD2L2Q9UI95 211 aa17.08■□□□□ 0.33
CXCL12-201ENST00000343575 GRM4Q14833 912 aa17.07■□□□□ 0.32
CXCL12-201ENST00000343575 LRRC47Q8N1G4 583 aaKnown RBP17.07■□□□□ 0.32
CXCL12-201ENST00000343575 CCDC82Q8N4S0 544 aa17.07■□□□□ 0.32
CXCL12-201ENST00000343575 SRBD1Q8N5C6 995 aaKnown RBP17.07■□□□□ 0.32
CXCL12-201ENST00000343575 MKL1Q969V6 931 aa17.07■□□□□ 0.32
CXCL12-201ENST00000343575 AIFM3Q96NN9 605 aa17.07■□□□□ 0.32
CXCL12-201ENST00000343575 PPP1R9BQ96SB3 815 aa17.07■□□□□ 0.32
CXCL12-201ENST00000343575 KANSL2Q9H9L4 492 aa17.07■□□□□ 0.32
CXCL12-201ENST00000343575 ORC3Q9UBD5 711 aaPredicted RBP17.07■□□□□ 0.32
CXCL12-201ENST00000343575 PITPNM2Q9BZ72 1349 aa17.07■□□□□ 0.32
CXCL12-201ENST00000343575 SSC5DA1L4H1 1573 aa17.07■□□□□ 0.32
CXCL12-201ENST00000343575 BAZ2BQ9UIF8 2168 aaKnown RBP17.07■□□□□ 0.32
CXCL12-201ENST00000343575 EEF2P13639 858 aaKnown RBP17.07■□□□□ 0.32
CXCL12-201ENST00000343575 EPHX2P34913 555 aa17.07■□□□□ 0.32
CXCL12-201ENST00000343575 FOXD4L5Q5VV16 416 aaPredicted RBP17.07■□□□□ 0.32
CXCL12-201ENST00000343575 TMTC3Q6ZXV5 915 aa17.07■□□□□ 0.32
CXCL12-201ENST00000343575 FOXD4L4Q8WXT5 416 aaPredicted RBP17.07■□□□□ 0.32
CXCL12-201ENST00000343575 CHAMP1Q96JM3 812 aa17.07■□□□□ 0.32
CXCL12-201ENST00000343575 NYAP2Q9P242 653 aa17.07■□□□□ 0.32
CXCL12-201ENST00000343575 MYH4Q9Y623 1939 aa17.07■□□□□ 0.32
CXCL12-201ENST00000343575 CCDC196A0A1B0GTZ2 297 aa17.06■□□□□ 0.32
CXCL12-201ENST00000343575 PALM3A6NDB9 673 aaPredicted RBP17.06■□□□□ 0.32
CXCL12-201ENST00000343575 FMNL1O95466 1100 aaPredicted RBP17.06■□□□□ 0.32
CXCL12-201ENST00000343575 SNHG28P0DPA3 235 aa17.06■□□□□ 0.32
CXCL12-201ENST00000343575 CAP2P40123 477 aa17.06■□□□□ 0.32
CXCL12-201ENST00000343575 HS1BP3Q53T59 392 aa17.06■□□□□ 0.32
CXCL12-201ENST00000343575 CDC37L1Q7L3B6 337 aa17.06■□□□□ 0.32
CXCL12-201ENST00000343575 GJB4Q9NTQ9 266 aa17.06■□□□□ 0.32
CXCL12-201ENST00000343575 SCN4AP35499 1836 aa17.06■□□□□ 0.32
CXCL12-201ENST00000343575 WDR90Q96KV7 1748 aa17.06■□□□□ 0.32
CXCL12-201ENST00000343575 A0A1W2PRG0 241 aa17.05■□□□□ 0.32
CXCL12-201ENST00000343575 PDHBP11177 359 aa17.05■□□□□ 0.32
CXCL12-201ENST00000343575 USP50Q70EL3 339 aaPredicted RBP17.05■□□□□ 0.32
CXCL12-201ENST00000343575 TAF1DQ9H5J8 278 aaPredicted RBP17.05■□□□□ 0.32
CXCL12-201ENST00000343575 RBM28Q9NW13 759 aaKnown RBP17.05■□□□□ 0.32
CXCL12-201ENST00000343575 ZBTB21Q9ULJ3 1066 aa17.05■□□□□ 0.32
CXCL12-201ENST00000343575 FZD1Q9UP38 647 aa17.05■□□□□ 0.32
CXCL12-201ENST00000343575 MTMR7Q9Y216 660 aa17.05■□□□□ 0.32
CXCL12-201ENST00000343575 USP17L5A8MUK1 530 aa17.05■□□□□ 0.32
CXCL12-201ENST00000343575 CDKL5O76039 1030 aa17.05■□□□□ 0.32
CXCL12-201ENST00000343575 ZSCAN22P10073 491 aaPredicted RBP17.05■□□□□ 0.32
CXCL12-201ENST00000343575 ICA1Q05084 483 aa17.05■□□□□ 0.32
CXCL12-201ENST00000343575 USP17L2Q6R6M4 530 aa17.05■□□□□ 0.32
CXCL12-201ENST00000343575 FAM184AQ8NB25 1140 aa17.05■□□□□ 0.32
CXCL12-201ENST00000343575 CTCFLQ8NI51 663 aaPredicted RBP17.05■□□□□ 0.32
CXCL12-201ENST00000343575 SLC26A6Q9BXS9 759 aa17.05■□□□□ 0.32
CXCL12-201ENST00000343575 PPP2R3BQ9Y5P8 575 aa17.05■□□□□ 0.32
CXCL12-201ENST00000343575 CNTNAP5Q8WYK1 1306 aa17.05■□□□□ 0.32
CXCL12-201ENST00000343575 STK36Q9NRP7 1315 aa17.05■□□□□ 0.32
CXCL12-201ENST00000343575 CYTH3O43739 400 aa17.04■□□□□ 0.32
CXCL12-201ENST00000343575 GOLGA8HP0CJ92 632 aa17.04■□□□□ 0.32
CXCL12-201ENST00000343575 PDCP20941 246 aa17.04■□□□□ 0.32
CXCL12-201ENST00000343575 PKN1Q16512 942 aa17.04■□□□□ 0.32
CXCL12-201ENST00000343575 OTUD7BQ6GQQ9 843 aa17.04■□□□□ 0.32
CXCL12-201ENST00000343575 CPLX2Q6PUV4 134 aaKnown RBP17.04■□□□□ 0.32
CXCL12-201ENST00000343575 SHISA4Q96DD7 197 aa17.04■□□□□ 0.32
CXCL12-201ENST00000343575 ZNF112Q9UJU3 913 aa17.04■□□□□ 0.32
CXCL12-201ENST00000343575 WDR33Q9C0J8 1336 aaKnown RBP17.04■□□□□ 0.32
CXCL12-201ENST00000343575 ADM5C9JUS6 153 aa17.03■□□□□ 0.32
CXCL12-201ENST00000343575 VEGFAP15692 232 aaPredicted RBP17.03■□□□□ 0.32
CXCL12-201ENST00000343575 FOSBP53539 338 aa17.03■□□□□ 0.32
CXCL12-201ENST00000343575 SSRP1Q08945 709 aaKnown RBP17.03■□□□□ 0.32
CXCL12-201ENST00000343575 CPVLQ9H3G5 476 aa17.03■□□□□ 0.32
CXCL12-201ENST00000343575 CABP5Q9NP86 173 aa17.03■□□□□ 0.32
CXCL12-201ENST00000343575 hCG_1642624A0A1W2PR95 340 aa17.03■□□□□ 0.32
CXCL12-201ENST00000343575 VPS37CA5D8V6 355 aaPredicted RBP17.03■□□□□ 0.32
CXCL12-201ENST00000343575 INPP5BP32019 993 aa17.03■□□□□ 0.32
CXCL12-201ENST00000343575 ECE1P42892 770 aa17.03■□□□□ 0.32
CXCL12-201ENST00000343575 ATP2B2Q01814 1243 aa17.03■□□□□ 0.32
CXCL12-201ENST00000343575 KLHL40Q2TBA0 621 aa17.03■□□□□ 0.32
CXCL12-201ENST00000343575 CCDC84Q86UT8 332 aaPredicted RBP17.03■□□□□ 0.32
CXCL12-201ENST00000343575 ZC3H15Q8WU90 426 aaKnown RBP17.03■□□□□ 0.32
CXCL12-201ENST00000343575 PKNOX2Q96KN3 472 aa17.03■□□□□ 0.32
CXCL12-201ENST00000343575 RNF26Q9BY78 433 aaPredicted RBP17.03■□□□□ 0.32
CXCL12-201ENST00000343575 V9GY48 417 aaPredicted RBP17.03■□□□□ 0.32
CXCL12-201ENST00000343575 PRPF3O43395 683 aaKnown RBP17.02■□□□□ 0.32
CXCL12-201ENST00000343575 F13A1P00488 732 aa17.02■□□□□ 0.32
CXCL12-201ENST00000343575 POTEIP0CG38 1075 aa17.02■□□□□ 0.32
CXCL12-201ENST00000343575 POTEJP0CG39 1038 aa17.02■□□□□ 0.32
CXCL12-201ENST00000343575 KIF5BP33176 963 aa17.02■□□□□ 0.32
CXCL12-201ENST00000343575 ZSCAN30Q86W11 494 aa17.02■□□□□ 0.32
CXCL12-201ENST00000343575 FBXO18Q8NFZ0 1043 aa17.02■□□□□ 0.32
CXCL12-201ENST00000343575 ACER1Q8TDN7 264 aa17.02■□□□□ 0.32
CXCL12-201ENST00000343575 DCPSQ96C86 337 aaKnown RBP17.02■□□□□ 0.32
CXCL12-201ENST00000343575 ALG1Q9BT22 464 aa17.02■□□□□ 0.32
CXCL12-201ENST00000343575 GLIS2Q9BZE0 524 aaPredicted RBP17.02■□□□□ 0.32
CXCL12-201ENST00000343575 PDCL3Q9H2J4 239 aa17.02■□□□□ 0.32
CXCL12-201ENST00000343575 ATAD5Q96QE3 1844 aa17.02■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms