RNA–Protein interactions for RNA: ENST00000321356.8

CLK1-201, Transcript of CDC like kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK1, Length 1,888 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-201ENST00000321356 TMTC3Q6ZXV5 915 aa9.89□□□□□ -0.83
CLK1-201ENST00000321356 CATIPQ7Z7H3 387 aa9.89□□□□□ -0.83
CLK1-201ENST00000321356 IGSF22Q8N9C0 903 aa9.89□□□□□ -0.83
CLK1-201ENST00000321356 LAMB1P07942 1786 aa9.89□□□□□ -0.83
CLK1-201ENST00000321356 LRRC10BA6NIK2 292 aa9.89□□□□□ -0.83
CLK1-201ENST00000321356 SOWAHDA6NJG2 315 aa9.89□□□□□ -0.83
CLK1-201ENST00000321356 PRDM1O75626 825 aa9.89□□□□□ -0.83
CLK1-201ENST00000321356 DDAH1O94760 285 aa9.89□□□□□ -0.83
CLK1-201ENST00000321356 SEC31AO94979 1220 aaKnown RBP9.89□□□□□ -0.83
CLK1-201ENST00000321356 CYP2C19P33261 490 aa9.89□□□□□ -0.83
CLK1-201ENST00000321356 AFMP43652 599 aa9.89□□□□□ -0.83
CLK1-201ENST00000321356 ATP2C1P98194 919 aaPredicted RBP9.89□□□□□ -0.83
CLK1-201ENST00000321356 KARSQ15046 597 aaKnown RBP9.89□□□□□ -0.83
CLK1-201ENST00000321356 RASGRP2Q7LDG7 609 aa9.89□□□□□ -0.83
CLK1-201ENST00000321356 PPFIBP1Q86W92 1011 aa9.89□□□□□ -0.83
CLK1-201ENST00000321356 CCDC51Q96ER9 411 aa9.89□□□□□ -0.83
CLK1-201ENST00000321356 V9GY48 417 aaPredicted RBP9.89□□□□□ -0.83
CLK1-201ENST00000321356 CNTNAP5Q8WYK1 1306 aa9.89□□□□□ -0.83
CLK1-201ENST00000321356 COL16A1Q07092 1604 aaPredicted RBP9.88□□□□□ -0.83
CLK1-201ENST00000321356 XDHP47989 1333 aa9.88□□□□□ -0.83
CLK1-201ENST00000321356 EXOC5O00471 708 aa9.88□□□□□ -0.83
CLK1-201ENST00000321356 SASH3O75995 380 aa9.88□□□□□ -0.83
CLK1-201ENST00000321356 CASP1P29466 404 aa9.88□□□□□ -0.83
CLK1-201ENST00000321356 CRKLP46109 303 aaKnown RBP9.88□□□□□ -0.83
CLK1-201ENST00000321356 NOM1Q5C9Z4 860 aaKnown RBP9.88□□□□□ -0.83
CLK1-201ENST00000321356 TTC38Q5R3I4 469 aa9.88□□□□□ -0.83
CLK1-201ENST00000321356 IFIT1BQ5T764 474 aaKnown RBP9.88□□□□□ -0.83
CLK1-201ENST00000321356 CNGA4Q8IV77 575 aa9.88□□□□□ -0.83
CLK1-201ENST00000321356 ZNF384Q8TF68 577 aa9.88□□□□□ -0.83
CLK1-201ENST00000321356 CCDC12Q8WUD4 166 aaPredicted RBP9.88□□□□□ -0.83
CLK1-201ENST00000321356 GOLGA1Q92805 767 aa9.88□□□□□ -0.83
CLK1-201ENST00000321356 CDC5LQ99459 802 aaKnown RBP9.88□□□□□ -0.83
CLK1-201ENST00000321356 EPC1Q9H2F5 836 aa9.88□□□□□ -0.83
CLK1-201ENST00000321356 BRMS1Q9HCU9 246 aa9.88□□□□□ -0.83
CLK1-201ENST00000321356 LIMA1Q9UHB6 759 aaKnown RBP9.88□□□□□ -0.83
CLK1-201ENST00000321356 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.88□□□□□ -0.83
CLK1-201ENST00000321356 ROBO1Q9Y6N7 1651 aa9.88□□□□□ -0.83
CLK1-201ENST00000321356 hCG_1642624A0A1W2PR95 340 aa9.87□□□□□ -0.83
CLK1-201ENST00000321356 CCDC66A2RUB6 948 aa9.87□□□□□ -0.83
CLK1-201ENST00000321356 ORC4O43929 436 aa9.87□□□□□ -0.83
CLK1-201ENST00000321356 GYPCP04921 128 aa9.87□□□□□ -0.83
CLK1-201ENST00000321356 TRAPPC10P48553 1259 aa9.87□□□□□ -0.83
CLK1-201ENST00000321356 STX17P56962 302 aa9.87□□□□□ -0.83
CLK1-201ENST00000321356 TUBB2AQ13885 445 aa9.87□□□□□ -0.83
CLK1-201ENST00000321356 UBE4AQ14139 1066 aa9.87□□□□□ -0.83
CLK1-201ENST00000321356 FILIP1LQ4L180 1135 aa9.87□□□□□ -0.83
CLK1-201ENST00000321356 TEX35Q5T0J7 233 aa9.87□□□□□ -0.83
CLK1-201ENST00000321356 JAKMIP3Q5VZ66 844 aa9.87□□□□□ -0.83
CLK1-201ENST00000321356 KLHL10Q6JEL2 608 aa9.87□□□□□ -0.83
CLK1-201ENST00000321356 PDXDC2PQ6P474 469 aa9.87□□□□□ -0.83
CLK1-201ENST00000321356 IQCA1Q86XH1 822 aa9.87□□□□□ -0.83
CLK1-201ENST00000321356 TUBB2BQ9BVA1 445 aa9.87□□□□□ -0.83
CLK1-201ENST00000321356 PARD6BQ9BYG5 372 aa9.87□□□□□ -0.83
CLK1-201ENST00000321356 IRX2Q9BZI1 471 aaPredicted RBP9.87□□□□□ -0.83
CLK1-201ENST00000321356 GNL3LQ9NVN8 582 aaKnown RBP9.87□□□□□ -0.83
CLK1-201ENST00000321356 MYH8P13535 1937 aa9.87□□□□□ -0.83
CLK1-201ENST00000321356 KIAA1551Q9HCM1 1747 aa9.87□□□□□ -0.83
CLK1-201ENST00000321356 CYP2D7A0A087X1C5 515 aa9.87□□□□□ -0.83
CLK1-201ENST00000321356 CCDC151A5D8V7 595 aa9.87□□□□□ -0.83
CLK1-201ENST00000321356 TXLNAP40222 546 aa9.87□□□□□ -0.83
CLK1-201ENST00000321356 GYG1P46976 350 aa9.87□□□□□ -0.83
CLK1-201ENST00000321356 FXR1P51114 621 aaKnown RBP eCLIP9.87□□□□□ -0.83
CLK1-201ENST00000321356 PTGDRQ13258 359 aa9.87□□□□□ -0.83
CLK1-201ENST00000321356 KRT31Q15323 416 aa9.87□□□□□ -0.83
CLK1-201ENST00000321356 ZNF174Q15697 407 aa9.87□□□□□ -0.83
CLK1-201ENST00000321356 CTR9Q6PD62 1173 aa9.87□□□□□ -0.83
CLK1-201ENST00000321356 SRGAP1Q7Z6B7 1085 aa9.87□□□□□ -0.83
CLK1-201ENST00000321356 SMYD4Q8IYR2 804 aaPredicted RBP9.87□□□□□ -0.83
CLK1-201ENST00000321356 IQUBQ8NA54 791 aa9.87□□□□□ -0.83
CLK1-201ENST00000321356 PYM1Q9BRP8 204 aaKnown RBP9.87□□□□□ -0.83
CLK1-201ENST00000321356 FUT8Q9BYC5 575 aa9.87□□□□□ -0.83
CLK1-201ENST00000321356 ARFGAP3Q9NP61 516 aa9.87□□□□□ -0.83
CLK1-201ENST00000321356 ZKSCAN7Q9P0L1 754 aaPredicted RBP9.87□□□□□ -0.83
CLK1-201ENST00000321356 ABCF2Q9UG63 623 aa9.87□□□□□ -0.83
CLK1-201ENST00000321356 CDC23Q9UJX2 597 aa9.87□□□□□ -0.83
CLK1-201ENST00000321356 IQSEC3Q9UPP2 1182 aaPredicted RBP9.87□□□□□ -0.83
CLK1-201ENST00000321356 NIP7Q9Y221 180 aaKnown RBP eCLIP9.87□□□□□ -0.83
CLK1-201ENST00000321356 TAF1P21675 1872 aa9.86□□□□□ -0.83
CLK1-201ENST00000321356 MAST2Q6P0Q8 1798 aa9.86□□□□□ -0.83
CLK1-201ENST00000321356 COL5A3P25940 1745 aaPredicted RBP9.86□□□□□ -0.83
CLK1-201ENST00000321356 ZNF335Q9H4Z2 1342 aaPredicted RBP9.86□□□□□ -0.83
CLK1-201ENST00000321356 A0A0U1RQJ8 604 aa9.86□□□□□ -0.83
CLK1-201ENST00000321356 GTPBP6O43824 516 aaPredicted RBP9.86□□□□□ -0.83
CLK1-201ENST00000321356 KIF5CO60282 957 aa9.86□□□□□ -0.83
CLK1-201ENST00000321356 CASP14P31944 242 aa9.86□□□□□ -0.83
CLK1-201ENST00000321356 DYNLL1P63167 89 aaKnown RBP9.86□□□□□ -0.83
CLK1-201ENST00000321356 BRD3Q15059 726 aa9.86□□□□□ -0.83
CLK1-201ENST00000321356 SRBD1Q8N5C6 995 aaKnown RBP9.86□□□□□ -0.83
CLK1-201ENST00000321356 ATRIPQ8WXE1 791 aa9.86□□□□□ -0.83
CLK1-201ENST00000321356 MTRQ99707 1265 aa9.86□□□□□ -0.83
CLK1-201ENST00000321356 LZTFL1Q9NQ48 299 aa9.86□□□□□ -0.83
CLK1-201ENST00000321356 RWDD2AQ9UIY3 292 aa9.86□□□□□ -0.83
CLK1-201ENST00000321356 TTF2Q9UNY4 1162 aaKnown RBP9.86□□□□□ -0.83
CLK1-201ENST00000321356 CTNND2Q9UQB3 1225 aa9.86□□□□□ -0.83
CLK1-201ENST00000321356 PDS5AQ29RF7 1337 aaKnown RBP9.85□□□□□ -0.83
CLK1-201ENST00000321356 SCG2P13521 617 aa9.85□□□□□ -0.83
CLK1-201ENST00000321356 USP5P45974 858 aa9.85□□□□□ -0.83
CLK1-201ENST00000321356 CHMP4BP1P59074 171 aa9.85□□□□□ -0.83
CLK1-201ENST00000321356 SPAG1Q07617 926 aa9.85□□□□□ -0.83
CLK1-201ENST00000321356 IL17AQ16552 155 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms