RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 RBM28Q9NW13 759 aaKnown RBP24.94■■□□□ 1.58
SHMT1-201ENST00000316694 ADAMTS2O95450 1211 aa24.94■■□□□ 1.58
SHMT1-201ENST00000316694 BMP15O95972 392 aa24.94■■□□□ 1.58
SHMT1-201ENST00000316694 CASP14P31944 242 aa24.94■■□□□ 1.58
SHMT1-201ENST00000316694 CCT6AP40227 531 aaKnown RBP24.94■■□□□ 1.58
SHMT1-201ENST00000316694 TROAPQ12815 778 aa24.94■■□□□ 1.58
SHMT1-201ENST00000316694 GOLGA1Q92805 767 aa24.94■■□□□ 1.58
SHMT1-201ENST00000316694 NAA15Q9BXJ9 866 aaKnown RBP24.93■■□□□ 1.58
SHMT1-201ENST00000316694 PARD6BQ9BYG5 372 aa24.93■■□□□ 1.58
SHMT1-201ENST00000316694 COL4A1P02462 1669 aa24.93■■□□□ 1.58
SHMT1-201ENST00000316694 SASH3O75995 380 aa24.93■■□□□ 1.58
SHMT1-201ENST00000316694 TBC1D8O95759 1140 aa24.93■■□□□ 1.58
SHMT1-201ENST00000316694 CICQ96RK0 1608 aaPredicted RBP24.93■■□□□ 1.58
SHMT1-201ENST00000316694 MFAP3LO75121 409 aa24.92■■□□□ 1.58
SHMT1-201ENST00000316694 PBX1P40424 430 aa24.92■■□□□ 1.58
SHMT1-201ENST00000316694 RABGGTAQ92696 567 aa24.92■■□□□ 1.58
SHMT1-201ENST00000316694 COL16A1Q07092 1604 aaPredicted RBP24.92■■□□□ 1.58
SHMT1-201ENST00000316694 DUOX1Q9NRD9 1551 aa24.92■■□□□ 1.58
SHMT1-201ENST00000316694 KIF5CO60282 957 aa24.92■■□□□ 1.58
SHMT1-201ENST00000316694 NPY5RQ15761 445 aa24.92■■□□□ 1.58
SHMT1-201ENST00000316694 TMTC3Q6ZXV5 915 aa24.92■■□□□ 1.58
SHMT1-201ENST00000316694 CREBRFQ8IUR6 639 aa24.92■■□□□ 1.58
SHMT1-201ENST00000316694 ZNF804BA4D1E1 1349 aa24.91■■□□□ 1.58
SHMT1-201ENST00000316694 MARCH10Q8NA82 808 aaPredicted RBP24.91■■□□□ 1.58
SHMT1-201ENST00000316694 TNFRSF25Q93038 417 aa24.91■■□□□ 1.58
SHMT1-201ENST00000316694 CDC5LQ99459 802 aaKnown RBP24.91■■□□□ 1.58
SHMT1-201ENST00000316694 ARFGAP3Q9NP61 516 aa24.91■■□□□ 1.58
SHMT1-201ENST00000316694 COL1A1P02452 1464 aaPredicted RBP24.91■■□□□ 1.58
SHMT1-201ENST00000316694 BCL9LQ86UU0 1499 aa24.91■■□□□ 1.58
SHMT1-201ENST00000316694 XDHP47989 1333 aa24.91■■□□□ 1.58
SHMT1-201ENST00000316694 NMT2O60551 498 aa24.91■■□□□ 1.58
SHMT1-201ENST00000316694 GYPCP04921 128 aa24.91■■□□□ 1.58
SHMT1-201ENST00000316694 CALM1P0DP23 149 aa24.91■■□□□ 1.58
SHMT1-201ENST00000316694 CALM2P0DP24 149 aa24.91■■□□□ 1.58
SHMT1-201ENST00000316694 CALM3P0DP25 149 aa24.91■■□□□ 1.58
SHMT1-201ENST00000316694 EVX2Q03828 476 aa24.91■■□□□ 1.58
SHMT1-201ENST00000316694 TAF3Q5VWG9 929 aa24.91■■□□□ 1.58
SHMT1-201ENST00000316694 RRAGBQ5VZM2 374 aa24.91■■□□□ 1.58
SHMT1-201ENST00000316694 PIK3AP1Q6ZUJ8 805 aa24.91■■□□□ 1.58
SHMT1-201ENST00000316694 CCDC66A2RUB6 948 aa24.9■■□□□ 1.58
SHMT1-201ENST00000316694 FXR1P51114 621 aaKnown RBP eCLIP24.9■■□□□ 1.58
SHMT1-201ENST00000316694 ATP2C1P98194 919 aaPredicted RBP24.9■■□□□ 1.58
SHMT1-201ENST00000316694 BRIP1Q9BX63 1249 aa24.9■■□□□ 1.58
SHMT1-201ENST00000316694 PHLPP1O60346 1717 aa24.9■■□□□ 1.58
SHMT1-201ENST00000316694 USP17L12C9JPN9 530 aa24.9■■□□□ 1.58
SHMT1-201ENST00000316694 USP17L21D6R901 530 aa24.9■■□□□ 1.58
SHMT1-201ENST00000316694 ATP8B1O43520 1251 aa24.9■■□□□ 1.58
SHMT1-201ENST00000316694 MCM7P33993 719 aa24.9■■□□□ 1.58
SHMT1-201ENST00000316694 CTR9Q6PD62 1173 aa24.9■■□□□ 1.58
SHMT1-201ENST00000316694 SRBD1Q8N5C6 995 aaKnown RBP24.9■■□□□ 1.58
SHMT1-201ENST00000316694 IQUBQ8NA54 791 aa24.9■■□□□ 1.58
SHMT1-201ENST00000316694 PUF60Q9UHX1 559 aaKnown RBP24.9■■□□□ 1.58
SHMT1-201ENST00000316694 FAM193AP78312 1265 aa24.89■■□□□ 1.58
SHMT1-201ENST00000316694 ZNF569Q5MCW4 686 aa24.89■■□□□ 1.58
SHMT1-201ENST00000316694 CNGA4Q8IV77 575 aa24.89■■□□□ 1.58
SHMT1-201ENST00000316694 CTCFLQ8NI51 663 aaPredicted RBP24.89■■□□□ 1.58
SHMT1-201ENST00000316694 CNTNAP5Q8WYK1 1306 aa24.89■■□□□ 1.57
SHMT1-201ENST00000316694 TAF1P21675 1872 aa24.89■■□□□ 1.57
SHMT1-201ENST00000316694 SEMA3EO15041 775 aa24.89■■□□□ 1.57
SHMT1-201ENST00000316694 N4BP3O15049 544 aa24.89■■□□□ 1.57
SHMT1-201ENST00000316694 TXLNAP40222 546 aa24.89■■□□□ 1.57
SHMT1-201ENST00000316694 NLRP5P59047 1200 aa24.89■■□□□ 1.57
SHMT1-201ENST00000316694 CHMP4BP1P59074 171 aa24.89■■□□□ 1.57
SHMT1-201ENST00000316694 CAVIN4Q5BKX8 364 aa24.89■■□□□ 1.57
SHMT1-201ENST00000316694 C3orf67Q6ZVT6 689 aa24.89■■□□□ 1.57
SHMT1-201ENST00000316694 DDAH1O94760 285 aa24.88■■□□□ 1.57
SHMT1-201ENST00000316694 KRT31Q15323 416 aa24.88■■□□□ 1.57
SHMT1-201ENST00000316694 ANKRD18AQ8IVF6 992 aa24.88■■□□□ 1.57
SHMT1-201ENST00000316694 ZNF384Q8TF68 577 aa24.88■■□□□ 1.57
SHMT1-201ENST00000316694 VPS16Q9H269 839 aa24.88■■□□□ 1.57
SHMT1-201ENST00000316694 CACNA1SQ13698 1873 aa24.88■■□□□ 1.57
SHMT1-201ENST00000316694 MYH8P13535 1937 aa24.88■■□□□ 1.57
SHMT1-201ENST00000316694 E2F4Q16254 413 aa24.88■■□□□ 1.57
SHMT1-201ENST00000316694 FAM47AQ5JRC9 791 aa24.88■■□□□ 1.57
SHMT1-201ENST00000316694 RASGRP2Q7LDG7 609 aa24.88■■□□□ 1.57
SHMT1-201ENST00000316694 SPATA31A1Q5TZJ5 1347 aa24.87■■□□□ 1.57
SHMT1-201ENST00000316694 WNK3Q9BYP7 1800 aa24.87■■□□□ 1.57
SHMT1-201ENST00000316694 CYP2C19P33261 490 aa24.87■■□□□ 1.57
SHMT1-201ENST00000316694 ACRBPQ8NEB7 543 aa24.87■■□□□ 1.57
SHMT1-201ENST00000316694 ZCCHC17Q9NP64 241 aaKnown RBP24.87■■□□□ 1.57
SHMT1-201ENST00000316694 OAS2P29728 719 aaKnown RBP24.87■■□□□ 1.57
SHMT1-201ENST00000316694 SRGAP1Q7Z6B7 1085 aa24.87■■□□□ 1.57
SHMT1-201ENST00000316694 KCNQ2O43526 872 aa24.86■■□□□ 1.57
SHMT1-201ENST00000316694 CDC25AP30304 524 aa24.86■■□□□ 1.57
SHMT1-201ENST00000316694 SMC1AQ14683 1233 aaKnown RBP24.86■■□□□ 1.57
SHMT1-201ENST00000316694 KIF4BQ2VIQ3 1234 aa24.86■■□□□ 1.57
SHMT1-201ENST00000316694 ADAMTS3O15072 1205 aa24.86■■□□□ 1.57
SHMT1-201ENST00000316694 SCG2P13521 617 aa24.86■■□□□ 1.57
SHMT1-201ENST00000316694 VEGFAP15692 232 aaPredicted RBP24.86■■□□□ 1.57
SHMT1-201ENST00000316694 IL17AQ16552 155 aa24.86■■□□□ 1.57
SHMT1-201ENST00000316694 PDXDC2PQ6P474 469 aa24.86■■□□□ 1.57
SHMT1-201ENST00000316694 NUP88Q99567 741 aaPredicted RBP24.86■■□□□ 1.57
SHMT1-201ENST00000316694 MTRQ99707 1265 aa24.86■■□□□ 1.57
SHMT1-201ENST00000316694 TAB2Q9NYJ8 693 aa24.86■■□□□ 1.57
SHMT1-201ENST00000316694 MAPK8IP1Q9UQF2 711 aa24.86■■□□□ 1.57
SHMT1-201ENST00000316694 ERFEQ4G0M1 354 aa24.85■■□□□ 1.57
SHMT1-201ENST00000316694 CDC23Q9UJX2 597 aa24.85■■□□□ 1.57
SHMT1-201ENST00000316694 KCNQ4P56696 695 aa24.85■■□□□ 1.57
SHMT1-201ENST00000316694 PAK1Q13153 545 aa24.85■■□□□ 1.57
SHMT1-201ENST00000316694 UBE4AQ14139 1066 aa24.85■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms