RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 SPATA24Q86W54 205 aa19.18■□□□□ 0.66
SHANK1-201ENST00000293441 GPBP1Q86WP2 473 aa19.18■□□□□ 0.66
SHANK1-201ENST00000293441 CCDC125Q86Z20 511 aa19.18■□□□□ 0.66
SHANK1-201ENST00000293441 PCDHB13Q9Y5F0 798 aa19.18■□□□□ 0.66
SHANK1-201ENST00000293441 PNOCQ13519 176 aa19.17■□□□□ 0.66
SHANK1-201ENST00000293441 MED10Q9BTT4 135 aa19.17■□□□□ 0.66
SHANK1-201ENST00000293441 NT5C3AQ9H0P0 336 aa19.17■□□□□ 0.66
SHANK1-201ENST00000293441 GREM2Q9H772 168 aa19.17■□□□□ 0.66
SHANK1-201ENST00000293441 ITIH3Q06033 890 aa19.17■□□□□ 0.66
SHANK1-201ENST00000293441 TRMT44Q8IYL2 757 aaKnown RBP19.17■□□□□ 0.66
SHANK1-201ENST00000293441 ANKRD35Q8N283 1001 aa19.17■□□□□ 0.66
SHANK1-201ENST00000293441 MRPL11Q9Y3B7 192 aaKnown RBP19.17■□□□□ 0.66
SHANK1-201ENST00000293441 NPC1L1Q9UHC9 1359 aa19.17■□□□□ 0.66
SHANK1-201ENST00000293441 NSMCE1Q8WV22 266 aa19.17■□□□□ 0.66
SHANK1-201ENST00000293441 CBX8Q9HC52 389 aa19.17■□□□□ 0.66
SHANK1-201ENST00000293441 KIAA0232Q92628 1395 aa19.17■□□□□ 0.66
SHANK1-201ENST00000293441 PDE6AP16499 860 aa19.17■□□□□ 0.66
SHANK1-201ENST00000293441 C8orf74Q6P047 294 aa19.17■□□□□ 0.66
SHANK1-201ENST00000293441 SECISBP2LQ93073 1101 aaKnown RBP19.17■□□□□ 0.66
SHANK1-201ENST00000293441 CNKSR1Q969H4 720 aa19.17■□□□□ 0.66
SHANK1-201ENST00000293441 RIOK1Q9BRS2 568 aaKnown RBP19.17■□□□□ 0.66
SHANK1-201ENST00000293441 NKIRAS1Q9NYS0 192 aa19.17■□□□□ 0.66
SHANK1-201ENST00000293441 TRPC5Q9UL62 973 aaPredicted RBP19.17■□□□□ 0.66
SHANK1-201ENST00000293441 PCCAP05165 728 aaPredicted RBP19.16■□□□□ 0.66
SHANK1-201ENST00000293441 SERTAD1Q9UHV2 236 aa19.16■□□□□ 0.66
SHANK1-201ENST00000293441 A0A0D9SFI3 127 aa19.16■□□□□ 0.66
SHANK1-201ENST00000293441 P4HA1P13674 534 aa19.16■□□□□ 0.66
SHANK1-201ENST00000293441 TPD52P55327 224 aaPredicted RBP19.16■□□□□ 0.66
SHANK1-201ENST00000293441 ICA1Q05084 483 aa19.16■□□□□ 0.66
SHANK1-201ENST00000293441 KLHL30Q0D2K2 578 aa19.16■□□□□ 0.66
SHANK1-201ENST00000293441 PPP2R5CQ13362 524 aa19.16■□□□□ 0.66
SHANK1-201ENST00000293441 FBXO11Q86XK2 927 aa19.16■□□□□ 0.66
SHANK1-201ENST00000293441 ASAP1Q9ULH1 1129 aa19.16■□□□□ 0.66
SHANK1-201ENST00000293441 EP400NLQ6ZTU2 488 aa19.16■□□□□ 0.66
SHANK1-201ENST00000293441 BLIDQ8IZY5 108 aa19.16■□□□□ 0.66
SHANK1-201ENST00000293441 PNMA1Q8ND90 353 aa19.16■□□□□ 0.66
SHANK1-201ENST00000293441 CLUL1Q15846 466 aa19.16■□□□□ 0.66
SHANK1-201ENST00000293441 SAMD15Q9P1V8 674 aa19.16■□□□□ 0.66
SHANK1-201ENST00000293441 ZNF804BA4D1E1 1349 aa19.16■□□□□ 0.66
SHANK1-201ENST00000293441 FAM182BQ5T319 152 aa19.16■□□□□ 0.66
SHANK1-201ENST00000293441 GPKOWQ92917 476 aaPredicted RBP eCLIP19.16■□□□□ 0.66
SHANK1-201ENST00000293441 CLRN2A0PK11 232 aa19.15■□□□□ 0.66
SHANK1-201ENST00000293441 FLOT1O75955 427 aa19.15■□□□□ 0.66
SHANK1-201ENST00000293441 IVLP07476 585 aa19.15■□□□□ 0.66
SHANK1-201ENST00000293441 SFMBT2Q5VUG0 894 aa19.15■□□□□ 0.66
SHANK1-201ENST00000293441 IPO4Q8TEX9 1081 aaKnown RBP19.15■□□□□ 0.66
SHANK1-201ENST00000293441 PFDN4Q9NQP4 134 aa19.15■□□□□ 0.66
SHANK1-201ENST00000293441 NFE2L3Q9Y4A8 694 aa19.15■□□□□ 0.66
SHANK1-201ENST00000293441 ACTN4O43707 911 aaKnown RBP19.15■□□□□ 0.66
SHANK1-201ENST00000293441 ATP5DP30049 168 aa19.15■□□□□ 0.66
SHANK1-201ENST00000293441 EVCP57679 992 aa19.15■□□□□ 0.66
SHANK1-201ENST00000293441 ME3Q16798 604 aa19.15■□□□□ 0.66
SHANK1-201ENST00000293441 KDM2BQ8NHM5 1336 aa19.15■□□□□ 0.66
SHANK1-201ENST00000293441 GADD45BO75293 160 aaPredicted RBP19.15■□□□□ 0.66
SHANK1-201ENST00000293441 YARSP54577 528 aaKnown RBP19.15■□□□□ 0.66
SHANK1-201ENST00000293441 PKNOX2Q96KN3 472 aa19.15■□□□□ 0.66
SHANK1-201ENST00000293441 THRAP3Q9Y2W1 955 aaKnown RBP19.15■□□□□ 0.66
SHANK1-201ENST00000293441 MYO5CQ9NQX4 1742 aa19.15■□□□□ 0.66
SHANK1-201ENST00000293441 XKR9Q5GH70 373 aa19.15■□□□□ 0.66
SHANK1-201ENST00000293441 TBC1D31Q96DN5 1066 aa19.15■□□□□ 0.66
SHANK1-201ENST00000293441 PSMB7Q99436 277 aa19.15■□□□□ 0.66
SHANK1-201ENST00000293441 USP44Q9H0E7 712 aa19.15■□□□□ 0.66
SHANK1-201ENST00000293441 RBSNQ9H1K0 784 aa19.15■□□□□ 0.66
SHANK1-201ENST00000293441 PABPC4Q13310 644 aaKnown RBP eCLIP19.15■□□□□ 0.66
SHANK1-201ENST00000293441 HPDP32754 393 aaPredicted RBP19.15■□□□□ 0.66
SHANK1-201ENST00000293441 CEP128Q6ZU80 1094 aa19.15■□□□□ 0.66
SHANK1-201ENST00000293441 ARHGAP30Q7Z6I6 1101 aaPredicted RBP19.15■□□□□ 0.66
SHANK1-201ENST00000293441 ASIC3Q9UHC3 531 aa19.15■□□□□ 0.66
SHANK1-201ENST00000293441 MNAT1P51948 309 aa19.14■□□□□ 0.66
SHANK1-201ENST00000293441 KLRF2D3W0D1 207 aa19.14■□□□□ 0.65
SHANK1-201ENST00000293441 LIG4P49917 911 aa19.14■□□□□ 0.65
SHANK1-201ENST00000293441 SETDB1Q15047 1291 aa19.14■□□□□ 0.65
SHANK1-201ENST00000293441 CASC4Q6P4E1 433 aa19.14■□□□□ 0.65
SHANK1-201ENST00000293441 ST7Q9NRC1 585 aa19.14■□□□□ 0.65
SHANK1-201ENST00000293441 PCDHA12Q9UN75 941 aa19.14■□□□□ 0.65
SHANK1-201ENST00000293441 CEP104O60308 925 aa19.14■□□□□ 0.65
SHANK1-201ENST00000293441 ABL1P00519 1130 aa19.14■□□□□ 0.65
SHANK1-201ENST00000293441 VIMP08670 466 aaKnown RBP19.14■□□□□ 0.65
SHANK1-201ENST00000293441 PTH1RQ03431 593 aa19.14■□□□□ 0.65
SHANK1-201ENST00000293441 LSM14BQ9BX40 385 aaKnown RBP19.14■□□□□ 0.65
SHANK1-201ENST00000293441 DDX25Q9UHL0 483 aaKnown RBP19.14■□□□□ 0.65
SHANK1-201ENST00000293441 POLA2Q14181 598 aa19.14■□□□□ 0.65
SHANK1-201ENST00000293441 HDXQ7Z353 690 aa19.14■□□□□ 0.65
SHANK1-201ENST00000293441 NLGN1Q8N2Q7 840 aa19.14■□□□□ 0.65
SHANK1-201ENST00000293441 TIGD1Q96MW7 591 aa19.14■□□□□ 0.65
SHANK1-201ENST00000293441 TMEM94Q12767 1356 aa19.14■□□□□ 0.65
SHANK1-201ENST00000293441 BIRC2Q13490 618 aa19.14■□□□□ 0.65
SHANK1-201ENST00000293441 ABCB5Q2M3G0 1257 aa19.14■□□□□ 0.65
SHANK1-201ENST00000293441 FAM76AQ8TAV0 307 aa19.14■□□□□ 0.65
SHANK1-201ENST00000293441 FAM207AQ9NSI2 230 aaPredicted RBP19.14■□□□□ 0.65
SHANK1-201ENST00000293441 TNKSO95271 1327 aa19.13■□□□□ 0.65
SHANK1-201ENST00000293441 CCDC160A6NGH7 325 aa19.13■□□□□ 0.65
SHANK1-201ENST00000293441 GMNNO75496 209 aa19.13■□□□□ 0.65
SHANK1-201ENST00000293441 NBPF11Q86T75 865 aa19.13■□□□□ 0.65
SHANK1-201ENST00000293441 GTF3C6Q969F1 213 aa19.13■□□□□ 0.65
SHANK1-201ENST00000293441 IGBP1P78318 339 aa19.13■□□□□ 0.65
SHANK1-201ENST00000293441 DAAM2Q86T65 1068 aa19.13■□□□□ 0.65
SHANK1-201ENST00000293441 ZBTB8OSQ8IWT0 167 aa19.13■□□□□ 0.65
SHANK1-201ENST00000293441 NLRC4Q9NPP4 1024 aa19.13■□□□□ 0.65
SHANK1-201ENST00000293441 CCPG1Q9ULG6 757 aa19.13■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms