RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 FTOQ9C0B1 505 aaKnown RBP eCLIP26.2■■□□□ 1.79
CDX1-201ENST00000231656 PGAP2Q9UHJ9 254 aa26.2■■□□□ 1.79
CDX1-201ENST00000231656 FMNL1O95466 1100 aaPredicted RBP26.2■■□□□ 1.78
CDX1-201ENST00000231656 HIRAP54198 1017 aaPredicted RBP26.2■■□□□ 1.78
CDX1-201ENST00000231656 RCSD1Q6JBY9 416 aa26.2■■□□□ 1.78
CDX1-201ENST00000231656 CDAN1Q8IWY9 1227 aa26.2■■□□□ 1.78
CDX1-201ENST00000231656 TRIM34Q9BYJ4 488 aa26.2■■□□□ 1.78
CDX1-201ENST00000231656 GOLGA6L4A6NEF3 574 aa26.19■■□□□ 1.78
CDX1-201ENST00000231656 KIF23Q02241 960 aaPredicted RBP26.19■■□□□ 1.78
CDX1-201ENST00000231656 CCDC178Q5BJE1 867 aa26.19■■□□□ 1.78
CDX1-201ENST00000231656 TATDN1Q6P1N9 297 aa26.19■■□□□ 1.78
CDX1-201ENST00000231656 BRAPQ7Z569 592 aa26.19■■□□□ 1.78
CDX1-201ENST00000231656 L3MBTL3Q96JM7 780 aaPredicted RBP26.19■■□□□ 1.78
CDX1-201ENST00000231656 PLIN4Q96Q06 1357 aa26.18■■□□□ 1.78
CDX1-201ENST00000231656 AKR1B1P15121 316 aa26.18■■□□□ 1.78
CDX1-201ENST00000231656 CEBPZQ03701 1054 aaKnown RBP26.18■■□□□ 1.78
CDX1-201ENST00000231656 ADARB2Q9NS39 739 aaKnown RBP26.18■■□□□ 1.78
CDX1-201ENST00000231656 HERC5Q9UII4 1024 aaKnown RBP26.18■■□□□ 1.78
CDX1-201ENST00000231656 KIF28PB7ZC32 967 aa26.18■■□□□ 1.78
CDX1-201ENST00000231656 SSRP1Q08945 709 aaKnown RBP26.18■■□□□ 1.78
CDX1-201ENST00000231656 DGKHQ86XP1 1220 aa26.18■■□□□ 1.78
CDX1-201ENST00000231656 GNL3Q9BVP2 549 aaKnown RBP eCLIP26.18■■□□□ 1.78
CDX1-201ENST00000231656 GLTPD2A6NH11 291 aa26.17■■□□□ 1.78
CDX1-201ENST00000231656 ANGEL2Q5VTE6 544 aaKnown RBP26.17■■□□□ 1.78
CDX1-201ENST00000231656 FANCBQ8NB91 859 aa26.17■■□□□ 1.78
CDX1-201ENST00000231656 ANKS1AQ92625 1134 aa26.17■■□□□ 1.78
CDX1-201ENST00000231656 CCDC17Q96LX7 622 aa26.17■■□□□ 1.78
CDX1-201ENST00000231656 SLC26A6Q9BXS9 759 aa26.17■■□□□ 1.78
CDX1-201ENST00000231656 POLR2AP24928 1970 aaKnown RBP26.17■■□□□ 1.78
CDX1-201ENST00000231656 MYH6P13533 1939 aa26.17■■□□□ 1.78
CDX1-201ENST00000231656 GREB1LQ9C091 1923 aaPredicted RBP26.17■■□□□ 1.78
CDX1-201ENST00000231656 KRT40Q6A162 431 aa26.16■■□□□ 1.78
CDX1-201ENST00000231656 NBPF11Q86T75 865 aa26.16■■□□□ 1.78
CDX1-201ENST00000231656 RTEL1Q9NZ71 1219 aa26.16■■□□□ 1.78
CDX1-201ENST00000231656 CCDC196A0A1B0GTZ2 297 aa26.15■■□□□ 1.78
CDX1-201ENST00000231656 CERKLQ49MI3 558 aaPredicted RBP26.15■■□□□ 1.78
CDX1-201ENST00000231656 APOBEC3FQ8IUX4 373 aaKnown RBP26.15■■□□□ 1.78
CDX1-201ENST00000231656 CEP95Q96GE4 821 aa26.15■■□□□ 1.78
CDX1-201ENST00000231656 TEPSINQ96N21 525 aa26.15■■□□□ 1.78
CDX1-201ENST00000231656 FUCA2Q9BTY2 467 aa26.15■■□□□ 1.78
CDX1-201ENST00000231656 DEFB129Q9H1M3 183 aa26.15■■□□□ 1.78
CDX1-201ENST00000231656 XPO5Q9HAV4 1204 aaKnown RBP eCLIP26.15■■□□□ 1.78
CDX1-201ENST00000231656 GGA3Q9NZ52 723 aa26.15■■□□□ 1.78
CDX1-201ENST00000231656 PPP2R5BQ15173 497 aa26.15■■□□□ 1.78
CDX1-201ENST00000231656 MYSM1Q5VVJ2 828 aa26.15■■□□□ 1.78
CDX1-201ENST00000231656 UBE2Q2LH0YL09 131 aa26.14■■□□□ 1.78
CDX1-201ENST00000231656 TBC1D12O60347 775 aa26.14■■□□□ 1.78
CDX1-201ENST00000231656 CATIPQ7Z7H3 387 aa26.14■■□□□ 1.78
CDX1-201ENST00000231656 BICD2Q8TD16 824 aa26.14■■□□□ 1.78
CDX1-201ENST00000231656 NUP133Q8WUM0 1156 aa26.14■■□□□ 1.78
CDX1-201ENST00000231656 WASF1Q92558 559 aa26.14■■□□□ 1.78
CDX1-201ENST00000231656 PPP1R9BQ96SB3 815 aa26.14■■□□□ 1.78
CDX1-201ENST00000231656 DDX19AQ9NUU7 478 aaKnown RBP26.14■■□□□ 1.78
CDX1-201ENST00000231656 DACT1Q9NYF0 836 aa26.14■■□□□ 1.78
CDX1-201ENST00000231656 STX8Q9UNK0 236 aa26.14■■□□□ 1.78
CDX1-201ENST00000231656 IGKV6D-41A0A0C4DH26 115 aa26.13■■□□□ 1.77
CDX1-201ENST00000231656 NOVP48745 357 aa26.13■■□□□ 1.77
CDX1-201ENST00000231656 NUP62CLQ9H1M0 184 aa26.13■■□□□ 1.77
CDX1-201ENST00000231656 MPHOSPH10O00566 681 aaKnown RBP26.12■■□□□ 1.77
CDX1-201ENST00000231656 CCDC173Q0VFZ6 552 aa26.12■■□□□ 1.77
CDX1-201ENST00000231656 TROAPQ12815 778 aa26.12■■□□□ 1.77
CDX1-201ENST00000231656 KAT14Q9H8E8 782 aa26.12■■□□□ 1.77
CDX1-201ENST00000231656 POLR3EQ9NVU0 708 aa26.12■■□□□ 1.77
CDX1-201ENST00000231656 MTMR4Q9NYA4 1195 aa26.12■■□□□ 1.77
CDX1-201ENST00000231656 DDAH1O94760 285 aa26.12■■□□□ 1.77
CDX1-201ENST00000231656 GUCY1A2P33402 732 aa26.12■■□□□ 1.77
CDX1-201ENST00000231656 MAP3K10Q02779 954 aa26.12■■□□□ 1.77
CDX1-201ENST00000231656 MIGA2Q7L4E1 593 aa26.12■■□□□ 1.77
CDX1-201ENST00000231656 TRIM22Q8IYM9 498 aa26.12■■□□□ 1.77
CDX1-201ENST00000231656 TMEM47Q9BQJ4 181 aa26.12■■□□□ 1.77
CDX1-201ENST00000231656 SCN4AP35499 1836 aa26.12■■□□□ 1.77
CDX1-201ENST00000231656 NR1I2O75469 434 aa26.11■■□□□ 1.77
CDX1-201ENST00000231656 RRP1BQ14684 758 aaKnown RBP26.11■■□□□ 1.77
CDX1-201ENST00000231656 RNF214Q8ND24 703 aa26.11■■□□□ 1.77
CDX1-201ENST00000231656 PNMA1Q8ND90 353 aa26.11■■□□□ 1.77
CDX1-201ENST00000231656 CLSTN2Q9H4D0 955 aa26.11■■□□□ 1.77
CDX1-201ENST00000231656 CLIC4Q9Y696 253 aa26.11■■□□□ 1.77
CDX1-201ENST00000231656 YEATS4O95619 227 aa26.1■■□□□ 1.77
CDX1-201ENST00000231656 TRIM29Q14134 588 aa26.1■■□□□ 1.77
CDX1-201ENST00000231656 SHROOM1Q2M3G4 852 aaPredicted RBP26.1■■□□□ 1.77
CDX1-201ENST00000231656 LINC00301Q8NCQ3 95 aa26.1■■□□□ 1.77
CDX1-201ENST00000231656 ANP32BQ92688 251 aaKnown RBP26.1■■□□□ 1.77
CDX1-201ENST00000231656 PITPNM2Q9BZ72 1349 aa26.1■■□□□ 1.77
CDX1-201ENST00000231656 GDF11O95390 407 aa26.1■■□□□ 1.77
CDX1-201ENST00000231656 DEXIO95424 95 aa26.1■■□□□ 1.77
CDX1-201ENST00000231656 CALM1P0DP23 149 aa26.1■■□□□ 1.77
CDX1-201ENST00000231656 CALM2P0DP24 149 aa26.1■■□□□ 1.77
CDX1-201ENST00000231656 CALM3P0DP25 149 aa26.1■■□□□ 1.77
CDX1-201ENST00000231656 U2AF2P26368 475 aaKnown RBP eCLIP26.1■■□□□ 1.77
CDX1-201ENST00000231656 ABCB5Q2M3G0 1257 aa26.1■■□□□ 1.77
CDX1-201ENST00000231656 CLEC10AQ8IUN9 316 aa26.1■■□□□ 1.77
CDX1-201ENST00000231656 MYH4Q9Y623 1939 aa26.09■■□□□ 1.77
CDX1-201ENST00000231656 EPHX2P34913 555 aa26.09■■□□□ 1.77
CDX1-201ENST00000231656 FUT2Q10981 343 aa26.09■■□□□ 1.77
CDX1-201ENST00000231656 MAP3K11Q16584 847 aa26.09■■□□□ 1.77
CDX1-201ENST00000231656 RBM43Q6ZSC3 357 aaKnown RBP26.09■■□□□ 1.77
CDX1-201ENST00000231656 CMTR1Q8N1G2 835 aaKnown RBP26.09■■□□□ 1.77
CDX1-201ENST00000231656 TOP1P11387 765 aaKnown RBP26.08■■□□□ 1.77
CDX1-201ENST00000231656 NBPF12Q5TAG4 269 aaPredicted RBP26.08■■□□□ 1.77
CDX1-201ENST00000231656 TMEM179Q6ZVK1 233 aa26.08■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms