RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 NUTM2AQ8IVF1 878 aaPredicted RBP23.09■■□□□ 1.29
SHKBP1-225ENST00000600733 ZNF384Q8TF68 577 aa23.09■■□□□ 1.29
SHKBP1-225ENST00000600733 DUOX1Q9NRD9 1551 aa23.09■■□□□ 1.29
SHKBP1-225ENST00000600733 XBP1P17861 261 aa23.08■■□□□ 1.29
SHKBP1-225ENST00000600733 EVX2Q03828 476 aa23.08■■□□□ 1.29
SHKBP1-225ENST00000600733 DDB1Q16531 1140 aa23.08■■□□□ 1.29
SHKBP1-225ENST00000600733 FCHSD1Q86WN1 690 aa23.08■■□□□ 1.29
SHKBP1-225ENST00000600733 AATFQ9NY61 560 aaKnown RBP eCLIP23.08■■□□□ 1.29
SHKBP1-225ENST00000600733 ZSCAN12O43309 604 aa23.08■■□□□ 1.29
SHKBP1-225ENST00000600733 URI1O94763 535 aaPredicted RBP23.08■■□□□ 1.29
SHKBP1-225ENST00000600733 PLCD1P51178 756 aa23.08■■□□□ 1.29
SHKBP1-225ENST00000600733 CATIPQ7Z7H3 387 aa23.08■■□□□ 1.29
SHKBP1-225ENST00000600733 GNL3LQ9NVN8 582 aaKnown RBP23.08■■□□□ 1.29
SHKBP1-225ENST00000600733 H2AFXP16104 143 aaPredicted RBP23.07■■□□□ 1.28
SHKBP1-225ENST00000600733 PPP2R5BQ15173 497 aa23.07■■□□□ 1.28
SHKBP1-225ENST00000600733 ERFEQ4G0M1 354 aa23.07■■□□□ 1.28
SHKBP1-225ENST00000600733 TOGARAM2Q6ZUX3 1019 aa23.07■■□□□ 1.28
SHKBP1-225ENST00000600733 SYMPKQ92797 1274 aaKnown RBP23.07■■□□□ 1.28
SHKBP1-225ENST00000600733 BAZ2BQ9UIF8 2168 aaKnown RBP23.07■■□□□ 1.28
SHKBP1-225ENST00000600733 PRPF3O43395 683 aaKnown RBP23.07■■□□□ 1.28
SHKBP1-225ENST00000600733 TROAPQ12815 778 aa23.07■■□□□ 1.28
SHKBP1-225ENST00000600733 ARHGAP29Q52LW3 1261 aa23.07■■□□□ 1.28
SHKBP1-225ENST00000600733 KLHL10Q6JEL2 608 aa23.07■■□□□ 1.28
SHKBP1-225ENST00000600733 ANKRD18AQ8IVF6 992 aa23.07■■□□□ 1.28
SHKBP1-225ENST00000600733 KRT222Q8N1A0 295 aa23.06■■□□□ 1.28
SHKBP1-225ENST00000600733 PARP3Q9Y6F1 533 aa23.06■■□□□ 1.28
SHKBP1-225ENST00000600733 STX10O60499 249 aa23.06■■□□□ 1.28
SHKBP1-225ENST00000600733 CD44P16070 742 aaKnown RBP23.06■■□□□ 1.28
SHKBP1-225ENST00000600733 IQCA1Q86XH1 822 aa23.06■■□□□ 1.28
SHKBP1-225ENST00000600733 MARCH10Q8NA82 808 aaPredicted RBP23.06■■□□□ 1.28
SHKBP1-225ENST00000600733 ERCC5P28715 1186 aaPredicted RBP23.05■■□□□ 1.28
SHKBP1-225ENST00000600733 STX17P56962 302 aa23.05■■□□□ 1.28
SHKBP1-225ENST00000600733 NR1I3Q14994 352 aa23.05■■□□□ 1.28
SHKBP1-225ENST00000600733 ZNF174Q15697 407 aa23.05■■□□□ 1.28
SHKBP1-225ENST00000600733 CTR9Q6PD62 1173 aa23.05■■□□□ 1.28
SHKBP1-225ENST00000600733 PAGE5Q96GU1 130 aa23.05■■□□□ 1.28
SHKBP1-225ENST00000600733 NOL10Q9BSC4 688 aaKnown RBP23.05■■□□□ 1.28
SHKBP1-225ENST00000600733 BRIP1Q9BX63 1249 aa23.05■■□□□ 1.28
SHKBP1-225ENST00000600733 A0A1B0GUL6 1792 aa23.05■■□□□ 1.28
SHKBP1-225ENST00000600733 SLFN14P0C7P3 912 aa23.05■■□□□ 1.28
SHKBP1-225ENST00000600733 UBE4AQ14139 1066 aa23.05■■□□□ 1.28
SHKBP1-225ENST00000600733 NPY5RQ15761 445 aa23.05■■□□□ 1.28
SHKBP1-225ENST00000600733 SMYD4Q8IYR2 804 aaPredicted RBP23.05■■□□□ 1.28
SHKBP1-225ENST00000600733 WDR24Q96S15 920 aa23.05■■□□□ 1.28
SHKBP1-225ENST00000600733 RREB1Q92766 1687 aa23.05■■□□□ 1.28
SHKBP1-225ENST00000600733 USP17L12C9JPN9 530 aa23.04■■□□□ 1.28
SHKBP1-225ENST00000600733 USP17L21D6R901 530 aa23.04■■□□□ 1.28
SHKBP1-225ENST00000600733 TEX33O43247 280 aa23.04■■□□□ 1.28
SHKBP1-225ENST00000600733 NMT2O60551 498 aa23.04■■□□□ 1.28
SHKBP1-225ENST00000600733 CAVIN4Q5BKX8 364 aa23.04■■□□□ 1.28
SHKBP1-225ENST00000600733 FAM84BQ96KN1 310 aaPredicted RBP23.04■■□□□ 1.28
SHKBP1-225ENST00000600733 DESI2Q9BSY9 194 aa23.04■■□□□ 1.28
SHKBP1-225ENST00000600733 FAM53CQ9NYF3 392 aa23.04■■□□□ 1.28
SHKBP1-225ENST00000600733 MINPP1Q9UNW1 487 aa23.04■■□□□ 1.28
SHKBP1-225ENST00000600733 A0A1B0GTH6 734 aa23.03■■□□□ 1.28
SHKBP1-225ENST00000600733 CLCN6P51797 869 aa23.03■■□□□ 1.28
SHKBP1-225ENST00000600733 CARD6Q9BX69 1037 aa23.03■■□□□ 1.28
SHKBP1-225ENST00000600733 RBM28Q9NW13 759 aaKnown RBP23.03■■□□□ 1.28
SHKBP1-225ENST00000600733 KLRK1P26718 216 aa23.03■■□□□ 1.28
SHKBP1-225ENST00000600733 APTXQ7Z2E3 356 aaKnown RBP23.03■■□□□ 1.28
SHKBP1-225ENST00000600733 SH3RF1Q7Z6J0 888 aa23.03■■□□□ 1.28
SHKBP1-225ENST00000600733 MNS1Q8NEH6 495 aa23.03■■□□□ 1.28
SHKBP1-225ENST00000600733 UBXN4Q92575 508 aa23.03■■□□□ 1.28
SHKBP1-225ENST00000600733 TNFRSF25Q93038 417 aa23.03■■□□□ 1.28
SHKBP1-225ENST00000600733 BSDC1Q9NW68 430 aaPredicted RBP23.03■■□□□ 1.28
SHKBP1-225ENST00000600733 ZNF652Q9Y2D9 606 aa23.03■■□□□ 1.28
SHKBP1-225ENST00000600733 GNG11P61952 73 aa23.02■■□□□ 1.28
SHKBP1-225ENST00000600733 TMTC3Q6ZXV5 915 aa23.02■■□□□ 1.28
SHKBP1-225ENST00000600733 STAMQ92783 540 aa23.02■■□□□ 1.28
SHKBP1-225ENST00000600733 SYNRGQ9UMZ2 1314 aa23.02■■□□□ 1.28
SHKBP1-225ENST00000600733 MYH13Q9UKX3 1938 aa23.02■■□□□ 1.28
SHKBP1-225ENST00000600733 ADAMTS2O95450 1211 aa23.02■■□□□ 1.28
SHKBP1-225ENST00000600733 FGRP09769 529 aa23.02■■□□□ 1.28
SHKBP1-225ENST00000600733 CUL4BQ13620 913 aa23.02■■□□□ 1.28
SHKBP1-225ENST00000600733 MTF1Q14872 753 aa23.02■■□□□ 1.28
SHKBP1-225ENST00000600733 SRBD1Q8N5C6 995 aaKnown RBP23.02■■□□□ 1.28
SHKBP1-225ENST00000600733 CELF1Q92879 486 aaKnown RBP23.02■■□□□ 1.28
SHKBP1-225ENST00000600733 FERMT2Q96AC1 680 aa23.02■■□□□ 1.28
SHKBP1-225ENST00000600733 SPATA31A1Q5TZJ5 1347 aa23.02■■□□□ 1.28
SHKBP1-225ENST00000600733 TADA3O75528 432 aa23.01■■□□□ 1.27
SHKBP1-225ENST00000600733 DPYDQ12882 1025 aa23.01■■□□□ 1.27
SHKBP1-225ENST00000600733 TTC38Q5R3I4 469 aa23.01■■□□□ 1.27
SHKBP1-225ENST00000600733 SPATA1Q5VX52 437 aa23.01■■□□□ 1.27
SHKBP1-225ENST00000600733 CCDC34Q96HJ3 373 aa23.01■■□□□ 1.27
SHKBP1-225ENST00000600733 BRMS1Q9HCU9 246 aa23.01■■□□□ 1.27
SHKBP1-225ENST00000600733 CNTNAP5Q8WYK1 1306 aa23.01■■□□□ 1.27
SHKBP1-225ENST00000600733 SCN7AQ01118 1682 aa23.01■■□□□ 1.27
SHKBP1-225ENST00000600733 GABPB1Q06547 395 aaPredicted RBP23.01■■□□□ 1.27
SHKBP1-225ENST00000600733 PTGDRQ13258 359 aa23.01■■□□□ 1.27
SHKBP1-225ENST00000600733 FAM47AQ5JRC9 791 aa23.01■■□□□ 1.27
SHKBP1-225ENST00000600733 BICDL1Q6ZP65 573 aa23.01■■□□□ 1.27
SHKBP1-225ENST00000600733 ST7Q9NRC1 585 aa23.01■■□□□ 1.27
SHKBP1-225ENST00000600733 KCNQ2O43526 872 aa23■■□□□ 1.27
SHKBP1-225ENST00000600733 CALM1P0DP23 149 aa23■■□□□ 1.27
SHKBP1-225ENST00000600733 CALM2P0DP24 149 aa23■■□□□ 1.27
SHKBP1-225ENST00000600733 CALM3P0DP25 149 aa23■■□□□ 1.27
SHKBP1-225ENST00000600733 SF3B3Q15393 1217 aaKnown RBP23■■□□□ 1.27
SHKBP1-225ENST00000600733 SRRTQ9BXP5 876 aaKnown RBP23■■□□□ 1.27
SHKBP1-225ENST00000600733 DLEC1Q9Y238 1755 aa23■■□□□ 1.27
SHKBP1-225ENST00000600733 SOWAHDA6NJG2 315 aa22.99■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms