RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 MTMR4Q9NYA4 1195 aa12.59□□□□□ -0.39
SS18-213ENST00000579640 TPCN1Q9ULQ1 816 aa12.59□□□□□ -0.39
SS18-213ENST00000579640 KLF18A0A0U1RQI7 1052 aa12.58□□□□□ -0.4
SS18-213ENST00000579640 NMT2O60551 498 aa12.58□□□□□ -0.4
SS18-213ENST00000579640 TTLL1O95922 423 aa12.58□□□□□ -0.4
SS18-213ENST00000579640 GH2P01242 217 aa12.58□□□□□ -0.4
SS18-213ENST00000579640 RRP1BQ14684 758 aaKnown RBP12.58□□□□□ -0.4
SS18-213ENST00000579640 MAP1SQ66K74 1059 aaPredicted RBP12.58□□□□□ -0.4
SS18-213ENST00000579640 RCSD1Q6JBY9 416 aa12.58□□□□□ -0.4
SS18-213ENST00000579640 TMX3Q96JJ7 454 aa12.58□□□□□ -0.4
SS18-213ENST00000579640 KAT14Q9H8E8 782 aa12.58□□□□□ -0.4
SS18-213ENST00000579640 NYAP2Q9P242 653 aa12.58□□□□□ -0.4
SS18-213ENST00000579640 DAXXQ9UER7 740 aaPredicted RBP12.58□□□□□ -0.4
SS18-213ENST00000579640 ZBTB21Q9ULJ3 1066 aa12.58□□□□□ -0.4
SS18-213ENST00000579640 STX8Q9UNK0 236 aa12.58□□□□□ -0.4
SS18-213ENST00000579640 SLC12A7Q9Y666 1083 aa12.58□□□□□ -0.4
SS18-213ENST00000579640 TOP1P11387 765 aaKnown RBP12.58□□□□□ -0.4
SS18-213ENST00000579640 YY1P25490 414 aa12.58□□□□□ -0.4
SS18-213ENST00000579640 CHADLQ6NUI6 762 aa12.58□□□□□ -0.4
SS18-213ENST00000579640 APOA5Q6Q788 366 aa12.58□□□□□ -0.4
SS18-213ENST00000579640 CATIPQ7Z7H3 387 aa12.58□□□□□ -0.4
SS18-213ENST00000579640 KLRG1Q96E93 195 aa12.58□□□□□ -0.4
SS18-213ENST00000579640 IPO9Q96P70 1041 aaKnown RBP12.58□□□□□ -0.4
SS18-213ENST00000579640 BRPF3Q9ULD4 1205 aa12.58□□□□□ -0.4
SS18-213ENST00000579640 SYNPO2Q9UMS6 1093 aa12.58□□□□□ -0.4
SS18-213ENST00000579640 ZBTB43O43298 467 aa12.57□□□□□ -0.4
SS18-213ENST00000579640 PFKFB2O60825 505 aa12.57□□□□□ -0.4
SS18-213ENST00000579640 DDAH1O94760 285 aa12.57□□□□□ -0.4
SS18-213ENST00000579640 CALM1P0DP23 149 aa12.57□□□□□ -0.4
SS18-213ENST00000579640 CALM2P0DP24 149 aa12.57□□□□□ -0.4
SS18-213ENST00000579640 CALM3P0DP25 149 aa12.57□□□□□ -0.4
SS18-213ENST00000579640 PDIA3P30101 505 aaKnown RBP12.57□□□□□ -0.4
SS18-213ENST00000579640 GUCY1A2P33402 732 aa12.57□□□□□ -0.4
SS18-213ENST00000579640 IREB2P48200 963 aaKnown RBP12.57□□□□□ -0.4
SS18-213ENST00000579640 ICA1Q05084 483 aa12.57□□□□□ -0.4
SS18-213ENST00000579640 SEPT2Q15019 361 aa12.57□□□□□ -0.4
SS18-213ENST00000579640 PPP2R5BQ15173 497 aa12.57□□□□□ -0.4
SS18-213ENST00000579640 ME3Q16798 604 aa12.57□□□□□ -0.4
SS18-213ENST00000579640 NOL9Q5SY16 702 aaKnown RBP12.57□□□□□ -0.4
SS18-213ENST00000579640 ZNF654Q8IZM8 581 aa12.57□□□□□ -0.4
SS18-213ENST00000579640 MKL1Q969V6 931 aa12.57□□□□□ -0.4
SS18-213ENST00000579640 WRNIP1Q96S55 665 aa12.57□□□□□ -0.4
SS18-213ENST00000579640 TMEM47Q9BQJ4 181 aa12.57□□□□□ -0.4
SS18-213ENST00000579640 SLKQ9H2G2 1235 aaPredicted RBP12.57□□□□□ -0.4
SS18-213ENST00000579640 SENP2Q9HC62 589 aa12.57□□□□□ -0.4
SS18-213ENST00000579640 ATAD5Q96QE3 1844 aa12.57□□□□□ -0.4
SS18-213ENST00000579640 DOCK1Q14185 1865 aa12.57□□□□□ -0.4
SS18-213ENST00000579640 GOLGA8BA8MQT2 603 aa12.56□□□□□ -0.4
SS18-213ENST00000579640 USP2O75604 605 aaPredicted RBP12.56□□□□□ -0.4
SS18-213ENST00000579640 MAP3K9P80192 1104 aa12.56□□□□□ -0.4
SS18-213ENST00000579640 RAB3GAP1Q15042 981 aa12.56□□□□□ -0.4
SS18-213ENST00000579640 MAP3K11Q16584 847 aa12.56□□□□□ -0.4
SS18-213ENST00000579640 SCYL3Q8IZE3 742 aa12.56□□□□□ -0.4
SS18-213ENST00000579640 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.56□□□□□ -0.4
SS18-213ENST00000579640 MAP3K14Q99558 947 aa12.56□□□□□ -0.4
SS18-213ENST00000579640 LARP6Q9BRS8 491 aaKnown RBP12.56□□□□□ -0.4
SS18-213ENST00000579640 ARHGEF10LQ9HCE6 1279 aa12.56□□□□□ -0.4
SS18-213ENST00000579640 NAP1L2Q9ULW6 460 aaPredicted RBP12.56□□□□□ -0.4
SS18-213ENST00000579640 NID2Q14112 1375 aa12.56□□□□□ -0.4
SS18-213ENST00000579640 UNCXA6NJT0 531 aa12.55□□□□□ -0.4
SS18-213ENST00000579640 METAP2P50579 478 aaKnown RBP eCLIP12.55□□□□□ -0.4
SS18-213ENST00000579640 JAG1P78504 1218 aa12.55□□□□□ -0.4
SS18-213ENST00000579640 CUL4AQ13619 759 aa12.55□□□□□ -0.4
SS18-213ENST00000579640 ARMC9Q7Z3E5 817 aa12.55□□□□□ -0.4
SS18-213ENST00000579640 PNMA1Q8ND90 353 aa12.55□□□□□ -0.4
SS18-213ENST00000579640 GTF3C6Q969F1 213 aa12.55□□□□□ -0.4
SS18-213ENST00000579640 SH2D4AQ9H788 454 aa12.55□□□□□ -0.4
SS18-213ENST00000579640 PICK1Q9NRD5 415 aa12.55□□□□□ -0.4
SS18-213ENST00000579640 CLIP2Q9UDT6 1046 aa12.55□□□□□ -0.4
SS18-213ENST00000579640 MYH4Q9Y623 1939 aa12.55□□□□□ -0.4
SS18-213ENST00000579640 CCDC196A0A1B0GTZ2 297 aa12.55□□□□□ -0.4
SS18-213ENST00000579640 DHX16O60231 1041 aaKnown RBP12.55□□□□□ -0.4
SS18-213ENST00000579640 LARGE1O95461 756 aa12.55□□□□□ -0.4
SS18-213ENST00000579640 EEF2P13639 858 aaKnown RBP12.55□□□□□ -0.4
SS18-213ENST00000579640 INPP5BP32019 993 aa12.55□□□□□ -0.4
SS18-213ENST00000579640 FKBP1BP68106 108 aa12.55□□□□□ -0.4
SS18-213ENST00000579640 TROAPQ12815 778 aa12.55□□□□□ -0.4
SS18-213ENST00000579640 DLK2Q6UY11 383 aa12.55□□□□□ -0.4
SS18-213ENST00000579640 MICU3Q86XE3 530 aa12.55□□□□□ -0.4
SS18-213ENST00000579640 INTS4Q96HW7 963 aaKnown RBP12.55□□□□□ -0.4
SS18-213ENST00000579640 HPS5Q9UPZ3 1129 aa12.55□□□□□ -0.4
SS18-213ENST00000579640 PAPPA2Q9BXP8 1791 aa12.54□□□□□ -0.4
SS18-213ENST00000579640 GOLGA8AA7E2F4 631 aa12.54□□□□□ -0.4
SS18-213ENST00000579640 USP17L5A8MUK1 530 aa12.54□□□□□ -0.4
SS18-213ENST00000579640 HSP90AA1P07900 732 aaKnown RBP12.54□□□□□ -0.4
SS18-213ENST00000579640 ATP2B2Q01814 1243 aa12.54□□□□□ -0.4
SS18-213ENST00000579640 SHROOM1Q2M3G4 852 aaPredicted RBP12.54□□□□□ -0.4
SS18-213ENST00000579640 ANKRD13AQ8IZ07 590 aa12.54□□□□□ -0.4
SS18-213ENST00000579640 CTCFLQ8NI51 663 aaPredicted RBP12.54□□□□□ -0.4
SS18-213ENST00000579640 NUP133Q8WUM0 1156 aa12.54□□□□□ -0.4
SS18-213ENST00000579640 AS3MTQ9HBK9 375 aa12.54□□□□□ -0.4
SS18-213ENST00000579640 RBM28Q9NW13 759 aaKnown RBP12.54□□□□□ -0.4
SS18-213ENST00000579640 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.54□□□□□ -0.4
SS18-213ENST00000579640 CSADQ9Y600 493 aa12.54□□□□□ -0.4
SS18-213ENST00000579640 KIF3CO14782 793 aa12.53□□□□□ -0.4
SS18-213ENST00000579640 KIF5BP33176 963 aa12.53□□□□□ -0.4
SS18-213ENST00000579640 SCRN1Q12765 414 aa12.53□□□□□ -0.4
SS18-213ENST00000579640 STK3Q13188 491 aa12.53□□□□□ -0.4
SS18-213ENST00000579640 PRKG1Q13976 671 aa12.53□□□□□ -0.4
SS18-213ENST00000579640 TTLL12Q14166 644 aaPredicted RBP12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms