RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 RPTORQ8N122 1335 aa8.2□□□□□ -1.1
VPS53-213ENST00000572334 ZNF236Q9UL36 1845 aa8.19□□□□□ -1.1
VPS53-213ENST00000572334 PLXNA1Q9UIW2 1896 aa8.19□□□□□ -1.1
VPS53-213ENST00000572334 IGHA2P01877 340 aa8.19□□□□□ -1.1
VPS53-213ENST00000572334 CHGBP05060 677 aa8.19□□□□□ -1.1
VPS53-213ENST00000572334 XRCC5P13010 732 aaKnown RBP8.19□□□□□ -1.1
VPS53-213ENST00000572334 PDE6AP16499 860 aa8.19□□□□□ -1.1
VPS53-213ENST00000572334 CAPN2P17655 700 aa8.19□□□□□ -1.1
VPS53-213ENST00000572334 CYP2B6P20813 491 aa8.19□□□□□ -1.1
VPS53-213ENST00000572334 IRX3P78415 501 aaPredicted RBP8.19□□□□□ -1.1
VPS53-213ENST00000572334 CCL14Q16627 93 aa8.19□□□□□ -1.1
VPS53-213ENST00000572334 SLFNL1Q499Z3 407 aa8.19□□□□□ -1.1
VPS53-213ENST00000572334 USP17L2Q6R6M4 530 aa8.19□□□□□ -1.1
VPS53-213ENST00000572334 CRACR2BQ8N4Y2 399 aaPredicted RBP8.19□□□□□ -1.1
VPS53-213ENST00000572334 GPRC5AQ8NFJ5 357 aa8.19□□□□□ -1.1
VPS53-213ENST00000572334 EDC3Q96F86 508 aaKnown RBP8.19□□□□□ -1.1
VPS53-213ENST00000572334 ZBTB40Q9NUA8 1239 aa8.19□□□□□ -1.1
VPS53-213ENST00000572334 TMOD4Q9NZQ9 345 aa8.19□□□□□ -1.1
VPS53-213ENST00000572334 SERPINB13Q9UIV8 391 aa8.19□□□□□ -1.1
VPS53-213ENST00000572334 OGDHLQ9ULD0 1010 aa8.19□□□□□ -1.1
VPS53-213ENST00000572334 PFASO15067 1338 aa8.19□□□□□ -1.1
VPS53-213ENST00000572334 A0A1W2PRG0 241 aa8.18□□□□□ -1.1
VPS53-213ENST00000572334 SOX1O00570 391 aaPredicted RBP8.18□□□□□ -1.1
VPS53-213ENST00000572334 HLA-DOAP06340 250 aa8.18□□□□□ -1.1
VPS53-213ENST00000572334 CYP2D6P10635 497 aa8.18□□□□□ -1.1
VPS53-213ENST00000572334 USP5P45974 858 aa8.18□□□□□ -1.1
VPS53-213ENST00000572334 CACNB2Q08289 660 aaPredicted RBP8.18□□□□□ -1.1
VPS53-213ENST00000572334 MAP3K12Q12852 859 aa8.18□□□□□ -1.1
VPS53-213ENST00000572334 ZYXQ15942 572 aaKnown RBP8.18□□□□□ -1.1
VPS53-213ENST00000572334 KIAA1755Q5JYT7 1200 aa8.18□□□□□ -1.1
VPS53-213ENST00000572334 LHX8Q68G74 356 aa8.18□□□□□ -1.1
VPS53-213ENST00000572334 LBX2Q6XYB7 198 aa8.18□□□□□ -1.1
VPS53-213ENST00000572334 CATSPERGQ6ZRH7 1159 aa8.18□□□□□ -1.1
VPS53-213ENST00000572334 GPR142Q7Z601 462 aa8.18□□□□□ -1.1
VPS53-213ENST00000572334 ERC1Q8IUD2 1116 aa8.18□□□□□ -1.1
VPS53-213ENST00000572334 SIAH1Q8IUQ4 282 aa8.18□□□□□ -1.1
VPS53-213ENST00000572334 LCORLQ8N3X6 602 aa8.18□□□□□ -1.1
VPS53-213ENST00000572334 ANKLE1Q8NAG6 615 aa8.18□□□□□ -1.1
VPS53-213ENST00000572334 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.18□□□□□ -1.1
VPS53-213ENST00000572334 KIAA1683Q9H0B3 1180 aa8.18□□□□□ -1.1
VPS53-213ENST00000572334 HMX1Q9NP08 348 aaPredicted RBP8.18□□□□□ -1.1
VPS53-213ENST00000572334 FLRT1Q9NZU1 646 aa8.18□□□□□ -1.1
VPS53-213ENST00000572334 BTBD7Q9P203 1132 aa8.18□□□□□ -1.1
VPS53-213ENST00000572334 LAMA2P24043 3122 aaKnown RBP8.18□□□□□ -1.1
VPS53-213ENST00000572334 MYH4Q9Y623 1939 aa8.17□□□□□ -1.1
VPS53-213ENST00000572334 EVI5O60447 810 aa8.17□□□□□ -1.1
VPS53-213ENST00000572334 COL6A1P12109 1028 aa8.17□□□□□ -1.1
VPS53-213ENST00000572334 PRKAR2AP13861 404 aaKnown RBP8.17□□□□□ -1.1
VPS53-213ENST00000572334 VCAM1P19320 739 aa8.17□□□□□ -1.1
VPS53-213ENST00000572334 CCND3P30281 292 aaPredicted RBP8.17□□□□□ -1.1
VPS53-213ENST00000572334 MAPK4P31152 587 aa8.17□□□□□ -1.1
VPS53-213ENST00000572334 SEPT2Q15019 361 aa8.17□□□□□ -1.1
VPS53-213ENST00000572334 ABCB5Q2M3G0 1257 aa8.17□□□□□ -1.1
VPS53-213ENST00000572334 CERKLQ49MI3 558 aaPredicted RBP8.17□□□□□ -1.1
VPS53-213ENST00000572334 SLC9C2Q5TAH2 1124 aa8.17□□□□□ -1.1
VPS53-213ENST00000572334 TMED8Q6PL24 325 aaPredicted RBP8.17□□□□□ -1.1
VPS53-213ENST00000572334 NECAB2Q7Z6G3 386 aa8.17□□□□□ -1.1
VPS53-213ENST00000572334 CERS3Q8IU89 383 aa8.17□□□□□ -1.1
VPS53-213ENST00000572334 SLC44A5Q8NCS7 719 aa8.17□□□□□ -1.1
VPS53-213ENST00000572334 SDR42E1Q8WUS8 393 aa8.17□□□□□ -1.1
VPS53-213ENST00000572334 SOCS4Q8WXH5 440 aa8.17□□□□□ -1.1
VPS53-213ENST00000572334 GDF15Q99988 308 aa8.17□□□□□ -1.1
VPS53-213ENST00000572334 NUDT12Q9BQG2 462 aa8.17□□□□□ -1.1
VPS53-213ENST00000572334 PAGR1Q9BTK6 254 aa8.17□□□□□ -1.1
VPS53-213ENST00000572334 DCP1AQ9NPI6 582 aaPredicted RBP8.17□□□□□ -1.1
VPS53-213ENST00000572334 STAP2Q9UGK3 403 aa8.17□□□□□ -1.1
VPS53-213ENST00000572334 COG6Q9Y2V7 657 aa8.17□□□□□ -1.1
VPS53-213ENST00000572334 NR2E3Q9Y5X4 410 aa8.17□□□□□ -1.1
VPS53-213ENST00000572334 ZNF532Q9HCE3 1301 aa8.17□□□□□ -1.1
VPS53-213ENST00000572334 LTBP2Q14767 1821 aa8.17□□□□□ -1.1
VPS53-213ENST00000572334 MAGEB6P1A0A0J9YX57 407 aa8.16□□□□□ -1.1
VPS53-213ENST00000572334 SPDYE16A6NNV3 312 aaPredicted RBP8.16□□□□□ -1.1
VPS53-213ENST00000572334 USP17L15C9J2P7 530 aa8.16□□□□□ -1.1
VPS53-213ENST00000572334 USP17L13C9JLJ4 530 aa8.16□□□□□ -1.1
VPS53-213ENST00000572334 USP17L11C9JVI0 530 aa8.16□□□□□ -1.1
VPS53-213ENST00000572334 USP17L18D6R9N7 530 aa8.16□□□□□ -1.1
VPS53-213ENST00000572334 USP17L22D6RA61 530 aa8.16□□□□□ -1.1
VPS53-213ENST00000572334 USP17L17D6RBQ6 530 aa8.16□□□□□ -1.1
VPS53-213ENST00000572334 USP17L19D6RCP7 530 aa8.16□□□□□ -1.1
VPS53-213ENST00000572334 USP17L20D6RJB6 530 aa8.16□□□□□ -1.1
VPS53-213ENST00000572334 GOLIM4O00461 696 aa8.16□□□□□ -1.1
VPS53-213ENST00000572334 PRKAB2O43741 272 aa8.16□□□□□ -1.1
VPS53-213ENST00000572334 MCM3APO60318 1980 aa8.16□□□□□ -1.1
VPS53-213ENST00000572334 USP17L24Q0WX57 530 aa8.16□□□□□ -1.1
VPS53-213ENST00000572334 MAP2K5Q13163 448 aa8.16□□□□□ -1.1
VPS53-213ENST00000572334 RAB3GAP1Q15042 981 aa8.16□□□□□ -1.1
VPS53-213ENST00000572334 PLEKHH3Q7Z736 793 aa8.16□□□□□ -1.1
VPS53-213ENST00000572334 TTC6Q86TZ1 520 aa8.16□□□□□ -1.1
VPS53-213ENST00000572334 CLEC10AQ8IUN9 316 aa8.16□□□□□ -1.1
VPS53-213ENST00000572334 RPAP2Q8IXW5 612 aaPredicted RBP8.16□□□□□ -1.1
VPS53-213ENST00000572334 NPLOC4Q8TAT6 608 aa8.16□□□□□ -1.1
VPS53-213ENST00000572334 GTF3C2Q8WUA4 911 aaPredicted RBP8.16□□□□□ -1.1
VPS53-213ENST00000572334 KIF1BPQ96EK5 621 aa8.16□□□□□ -1.1
VPS53-213ENST00000572334 TRIM34Q9BYJ4 488 aa8.16□□□□□ -1.1
VPS53-213ENST00000572334 RABGAP1Q9Y3P9 1069 aa8.16□□□□□ -1.1
VPS53-213ENST00000572334 CYP2D7A0A087X1C5 515 aa8.15□□□□□ -1.1
VPS53-213ENST00000572334 A0A1W2PPC1 479 aa8.15□□□□□ -1.1
VPS53-213ENST00000572334 APBB1O00213 710 aa8.15□□□□□ -1.1
VPS53-213ENST00000572334 HOXC6P09630 235 aa8.15□□□□□ -1.1
VPS53-213ENST00000572334 ZKSCAN1P17029 563 aaPredicted RBP8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms