RNA–Protein interactions for RNA: ENST00000560970.5

TPM1-227, Transcript of tropomyosin 1, humanhuman

TSL 1 (best)

Gene TPM1, Length 1,039 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-227ENST00000560970 ERVK-9P63128 1117 aa13.03□□□□□ -0.32
TPM1-227ENST00000560970 ERVK-24P63145 666 aa13.03□□□□□ -0.32
TPM1-227ENST00000560970 FOXP4Q8IVH2 680 aaPredicted RBP13.03□□□□□ -0.32
TPM1-227ENST00000560970 TRMT44Q8IYL2 757 aaKnown RBP13.03□□□□□ -0.32
TPM1-227ENST00000560970 GPRC5AQ8NFJ5 357 aa13.03□□□□□ -0.32
TPM1-227ENST00000560970 APBA2Q99767 749 aa13.03□□□□□ -0.32
TPM1-227ENST00000560970 NBPF3Q9H094 633 aa13.03□□□□□ -0.32
TPM1-227ENST00000560970 EHD4Q9H223 541 aa13.03□□□□□ -0.32
TPM1-227ENST00000560970 C11orf49Q9H6J7 331 aa13.03□□□□□ -0.32
TPM1-227ENST00000560970 ZNFX1Q9P2E3 1918 aaKnown RBP13.03□□□□□ -0.32
TPM1-227ENST00000560970 IDH1O75874 414 aaKnown RBP13.02□□□□□ -0.33
TPM1-227ENST00000560970 CYP2B6P20813 491 aa13.02□□□□□ -0.33
TPM1-227ENST00000560970 CYP7A1P22680 504 aa13.02□□□□□ -0.33
TPM1-227ENST00000560970 IRX6P78412 446 aaPredicted RBP13.02□□□□□ -0.33
TPM1-227ENST00000560970 TMED8Q6PL24 325 aaPredicted RBP13.02□□□□□ -0.33
TPM1-227ENST00000560970 USP17L2Q6R6M4 530 aa13.02□□□□□ -0.33
TPM1-227ENST00000560970 C12orf42Q96LP6 360 aa13.02□□□□□ -0.33
TPM1-227ENST00000560970 PAGR1Q9BTK6 254 aa13.02□□□□□ -0.33
TPM1-227ENST00000560970 BCL11AQ9H165 835 aa13.02□□□□□ -0.33
TPM1-227ENST00000560970 DCTPP1Q9H773 170 aa13.02□□□□□ -0.33
TPM1-227ENST00000560970 OGDHLQ9ULD0 1010 aa13.02□□□□□ -0.33
TPM1-227ENST00000560970 NDUFB9Q9Y6M9 179 aa13.02□□□□□ -0.33
TPM1-227ENST00000560970 MYH4Q9Y623 1939 aa13.01□□□□□ -0.33
TPM1-227ENST00000560970 SOX1O00570 391 aaPredicted RBP13.01□□□□□ -0.33
TPM1-227ENST00000560970 PEX10O60683 326 aa13.01□□□□□ -0.33
TPM1-227ENST00000560970 GH2P01242 217 aa13.01□□□□□ -0.33
TPM1-227ENST00000560970 RGS2P41220 211 aa13.01□□□□□ -0.33
TPM1-227ENST00000560970 USP5P45974 858 aa13.01□□□□□ -0.33
TPM1-227ENST00000560970 MNX1P50219 401 aaPredicted RBP13.01□□□□□ -0.33
TPM1-227ENST00000560970 DYNLL1P63167 89 aaKnown RBP13.01□□□□□ -0.33
TPM1-227ENST00000560970 GPR142Q7Z601 462 aa13.01□□□□□ -0.33
TPM1-227ENST00000560970 CCAR1Q8IX12 1150 aaKnown RBP13.01□□□□□ -0.33
TPM1-227ENST00000560970 CLASRPQ8N2M8 674 aaKnown RBP13.01□□□□□ -0.33
TPM1-227ENST00000560970 MAGEB6Q8N7X4 407 aa13.01□□□□□ -0.33
TPM1-227ENST00000560970 MIGA1Q8NAN2 632 aa13.01□□□□□ -0.33
TPM1-227ENST00000560970 P2RX7Q99572 595 aaKnown RBP13.01□□□□□ -0.33
TPM1-227ENST00000560970 LRRCC1Q9C099 1032 aa13.01□□□□□ -0.33
TPM1-227ENST00000560970 PORCNQ9H237 461 aa13.01□□□□□ -0.33
TPM1-227ENST00000560970 EMILIN3Q9NT22 766 aa13.01□□□□□ -0.33
TPM1-227ENST00000560970 SERPINB13Q9UIV8 391 aa13.01□□□□□ -0.33
TPM1-227ENST00000560970 PFASO15067 1338 aa13.01□□□□□ -0.33
TPM1-227ENST00000560970 BMP8BP34820 402 aa13□□□□□ -0.33
TPM1-227ENST00000560970 ZYXQ15942 572 aaKnown RBP13□□□□□ -0.33
TPM1-227ENST00000560970 TATDN1Q6P1N9 297 aa13□□□□□ -0.33
TPM1-227ENST00000560970 USP6NLQ92738 828 aa13□□□□□ -0.33
TPM1-227ENST00000560970 GDF15Q99988 308 aa13□□□□□ -0.33
TPM1-227ENST00000560970 CWC22Q9HCG8 908 aaKnown RBP13□□□□□ -0.33
TPM1-227ENST00000560970 RBPJLQ9UBG7 517 aa13□□□□□ -0.33
TPM1-227ENST00000560970 STAP2Q9UGK3 403 aa13□□□□□ -0.33
TPM1-227ENST00000560970 ZMYND8Q9ULU4 1186 aaPredicted RBP13□□□□□ -0.33
TPM1-227ENST00000560970 IFIT2P09913 472 aaKnown RBP12.99□□□□□ -0.33
TPM1-227ENST00000560970 VCAM1P19320 739 aa12.99□□□□□ -0.33
TPM1-227ENST00000560970 USP14P54578 494 aa12.99□□□□□ -0.33
TPM1-227ENST00000560970 CCNA1P78396 465 aa12.99□□□□□ -0.33
TPM1-227ENST00000560970 MAP3K12Q12852 859 aa12.99□□□□□ -0.33
TPM1-227ENST00000560970 MORN1Q5T089 497 aa12.99□□□□□ -0.33
TPM1-227ENST00000560970 PLEKHH3Q7Z736 793 aa12.99□□□□□ -0.33
TPM1-227ENST00000560970 LRCH3Q96II8 777 aa12.99□□□□□ -0.33
TPM1-227ENST00000560970 KIAA1683Q9H0B3 1180 aa12.99□□□□□ -0.33
TPM1-227ENST00000560970 USP17L15C9J2P7 530 aa12.98□□□□□ -0.33
TPM1-227ENST00000560970 USP17L13C9JLJ4 530 aa12.98□□□□□ -0.33
TPM1-227ENST00000560970 USP17L11C9JVI0 530 aa12.98□□□□□ -0.33
TPM1-227ENST00000560970 USP17L18D6R9N7 530 aa12.98□□□□□ -0.33
TPM1-227ENST00000560970 USP17L22D6RA61 530 aa12.98□□□□□ -0.33
TPM1-227ENST00000560970 USP17L17D6RBQ6 530 aa12.98□□□□□ -0.33
TPM1-227ENST00000560970 USP17L19D6RCP7 530 aa12.98□□□□□ -0.33
TPM1-227ENST00000560970 USP17L20D6RJB6 530 aa12.98□□□□□ -0.33
TPM1-227ENST00000560970 CACNB2Q08289 660 aaPredicted RBP12.98□□□□□ -0.33
TPM1-227ENST00000560970 USP17L24Q0WX57 530 aa12.98□□□□□ -0.33
TPM1-227ENST00000560970 MAP2K5Q13163 448 aa12.98□□□□□ -0.33
TPM1-227ENST00000560970 HDAC1Q13547 482 aaPredicted RBP12.98□□□□□ -0.33
TPM1-227ENST00000560970 RAB3GAP1Q15042 981 aa12.98□□□□□ -0.33
TPM1-227ENST00000560970 CCL14Q16627 93 aa12.98□□□□□ -0.33
TPM1-227ENST00000560970 TTC6Q86TZ1 520 aa12.98□□□□□ -0.33
TPM1-227ENST00000560970 ANTXR1Q9H6X2 564 aa12.98□□□□□ -0.33
TPM1-227ENST00000560970 RABGAP1Q9Y3P9 1069 aa12.98□□□□□ -0.33
TPM1-227ENST00000560970 LAMA2P24043 3122 aaKnown RBP12.97□□□□□ -0.33
TPM1-227ENST00000560970 CNMDO75829 334 aa12.97□□□□□ -0.33
TPM1-227ENST00000560970 GLRX3O76003 335 aaKnown RBP12.97□□□□□ -0.33
TPM1-227ENST00000560970 COL6A1P12109 1028 aa12.97□□□□□ -0.33
TPM1-227ENST00000560970 SYN1P17600 705 aa12.97□□□□□ -0.33
TPM1-227ENST00000560970 CCND3P30281 292 aaPredicted RBP12.97□□□□□ -0.33
TPM1-227ENST00000560970 MAGEA10P43363 369 aaPredicted RBP12.97□□□□□ -0.33
TPM1-227ENST00000560970 ABCB5Q2M3G0 1257 aa12.97□□□□□ -0.33
TPM1-227ENST00000560970 TSHZ3Q63HK5 1081 aa12.97□□□□□ -0.33
TPM1-227ENST00000560970 GPR153Q6NV75 609 aa12.97□□□□□ -0.33
TPM1-227ENST00000560970 POTEEQ6S8J3 1075 aa12.97□□□□□ -0.33
TPM1-227ENST00000560970 LBX2Q6XYB7 198 aa12.97□□□□□ -0.33
TPM1-227ENST00000560970 TDHQ8IZJ6 230 aa12.97□□□□□ -0.33
TPM1-227ENST00000560970 EDC3Q96F86 508 aaKnown RBP12.97□□□□□ -0.33
TPM1-227ENST00000560970 RIOK1Q9BRS2 568 aaKnown RBP12.97□□□□□ -0.33
TPM1-227ENST00000560970 SHMT1P34896 483 aa12.96□□□□□ -0.33
TPM1-227ENST00000560970 AAMPQ13685 434 aa12.96□□□□□ -0.33
TPM1-227ENST00000560970 GRB14Q14449 540 aa12.96□□□□□ -0.33
TPM1-227ENST00000560970 TTF1Q15361 905 aaPredicted RBP12.96□□□□□ -0.33
TPM1-227ENST00000560970 Q3C1V9 767 aa12.96□□□□□ -0.33
TPM1-227ENST00000560970 CERKLQ49MI3 558 aaPredicted RBP12.96□□□□□ -0.33
TPM1-227ENST00000560970 WDR78Q5VTH9 848 aa12.96□□□□□ -0.33
TPM1-227ENST00000560970 OTUD7AQ8TE49 926 aaPredicted RBP12.96□□□□□ -0.33
TPM1-227ENST00000560970 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms